mRNA_P-wetherbeei_contig59011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: UPI001C21F17F (PadR family transcriptional regulator n=2 Tax=Reyranella TaxID=445219 RepID=UPI001C21F17F) HSP 1 Score: 224 bits (570), Expect = 5.800e-72 Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQPR GY LIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKS+GARKAF VT +GT HL ER+AEV+ALFARLAELA++ +RTDA PVRRAM NLR VLIHRLGR+GVQKQTVH+AVAIIDEAAQRIERL
Sbjct: 62 IADQPRHGYELIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSDGARKAFTVTPDGTIHLLERKAEVDALFARLAELASLQERTDAAPVRRAMNNLREVLIHRLGREGVQKQTVHDAVAIIDEAAQRIERL 197
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A6N6ZYD3_9PROT (PadR domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N6ZYD3_9PROT) HSP 1 Score: 219 bits (558), Expect = 3.870e-70 Identity = 111/136 (81.62%), Postives = 124/136 (91.18%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+AD+PR GY LIRAIEELTGGSYVPSPGMVYPTLT+LDEMGH+AE KSEG+RKAFA+T +GT HL ER+ EV+ALFARLAELA V +RTD+ PVRRAMGNLR LI+RLGRDGVQKQTVH+AVAIIDEAAQRIERL
Sbjct: 62 IADEPRHGYELIRAIEELTGGSYVPSPGMVYPTLTLLDEMGHIAETKSEGSRKAFAITPDGTVHLTERKGEVDALFARLAELANVQERTDSAPVRRAMGNLREALINRLGRDGVQKQTVHDAVAIIDEAAQRIERL 197
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A259MGP8_9PROT (PadR family transcriptional regulator n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MGP8_9PROT) HSP 1 Score: 216 bits (550), Expect = 5.970e-69 Identity = 112/136 (82.35%), Postives = 123/136 (90.44%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+AD+PR GY LIRAIEELTGG YVPSPGM+YPTLTMLDEMGH+AEVKSEGARK+FAVT +GTAHL ER+ EV ALFARLAELA + +RTD+ PVRRAMGNLR LI RLGRDGVQKQTVH+AVAIIDEAAQRIERL
Sbjct: 60 IADEPRHGYELIRAIEELTGGRYVPSPGMIYPTLTMLDEMGHIAEVKSEGARKSFAVTPDGTAHLDERKVEVAALFARLAELAGLQERTDSAPVRRAMGNLREALILRLGRDGVQKQTVHDAVAIIDEAAQRIERL 195
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A522ZIF9_9HYPH (PadR family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A522ZIF9_9HYPH) HSP 1 Score: 209 bits (532), Expect = 3.360e-66 Identity = 107/136 (78.68%), Postives = 122/136 (89.71%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+AD+PR GY LIRAIEELTGG YVPSPGMVYPTLT+LDEMGH+AE KSE ARKAFAVT +GT HL ER+AEV+ALFARLAELA++ +RTD+ PVRRAMGNLR LI+RL RDGVQKQTV++A AIIDEAAQ+IERL
Sbjct: 61 IADEPRHGYELIRAIEELTGGRYVPSPGMVYPTLTLLDEMGHIAETKSEKARKAFAVTPDGTTHLVERKAEVDALFARLAELASLQERTDSAPVRRAMGNLREALINRLSRDGVQKQTVYDAAAIIDEAAQKIERL 196
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A1Q3LN88_9PROT (PadR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3LN88_9PROT) HSP 1 Score: 202 bits (513), Expect = 2.590e-63 Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQPR GY LIRAIE+LTGGSYVPSPGMVYPTLTML +MGH+ E KSEG+RKAFA T EG AHLA R+ EV+ALFARL ELA + +RTD P+RRAM NLRAVLIHRLGR+GV+ +T+H+AVAIIDEAAQ+IERL
Sbjct: 61 IADQPRHGYELIRAIEDLTGGSYVPSPGMVYPTLTMLLDMGHITEAKSEGSRKAFAATDEGVAHLAARKEEVDALFARLVELADLRERTDNAPIRRAMANLRAVLIHRLGREGVETKTLHDAVAIIDEAAQKIERL 196
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A521QQZ7_9HYPH (PadR family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QQZ7_9HYPH) HSP 1 Score: 201 bits (512), Expect = 3.230e-63 Identity = 104/136 (76.47%), Postives = 119/136 (87.50%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQPR GY LIRAIE+LTGGSYVPSPGMVYPTLTML EMGHVAE KSEG RKAFAVT +G + LA ++ EV+ALFARLAELA +RTD+ P+RRAM NLRAVLIHRLGR+ +Q QT+HEAV+IIDEAAQ+IERL
Sbjct: 56 IADQPRHGYELIRAIEDLTGGSYVPSPGMVYPTLTMLLEMGHVAEAKSEGPRKAFAVTEDGISELAAKKTEVDALFARLAELANQQERTDSAPIRRAMSNLRAVLIHRLGREDIQMQTLHEAVSIIDEAAQKIERL 191
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: UPI0012FA475A (PadR family transcriptional regulator n=1 Tax=Sphingomonas formosensis TaxID=861534 RepID=UPI0012FA475A) HSP 1 Score: 198 bits (503), Expect = 7.520e-62 Identity = 99/136 (72.79%), Postives = 116/136 (85.29%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQ R GY LIRAIEELTGGSYVPSPG+VYPTLT+L +MGH+ E K+EG RKAF++T EGTAHLAE+Q EVEALF+RLAELA + +RTD P+RRAMGNLRAVL+HRLGR+ V +T H AI+DEAAQRIERL
Sbjct: 57 IADQSRHGYDLIRAIEELTGGSYVPSPGVVYPTLTLLQDMGHIEEAKTEGTRKAFSITEEGTAHLAEKQDEVEALFSRLAELAALRERTDGAPIRRAMGNLRAVLMHRLGREDVSSETQHAVAAILDEAAQRIERL 192
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A1H8X4L8_9PROT (DNA-binding transcriptional regulator, PadR family n=2 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8X4L8_9PROT) HSP 1 Score: 187 bits (475), Expect = 4.940e-57 Identity = 93/136 (68.38%), Postives = 115/136 (84.56%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQPR GY LIRAIEELTGG+YVPSPG++YPTLT+L +MG + E +EG RK FA+TA+GTA L ++ EVEALFARLAELA++ +RTD PVRRAMGNLR VL+ RLG+DGVQ +T+HE AI+DEAA++IERL
Sbjct: 99 IADQPRHGYELIRAIEELTGGAYVPSPGVIYPTLTLLQDMGRIEEAAAEGPRKPFAITADGTAELLAKKPEVEALFARLAELASLRERTDGGPVRRAMGNLRTVLLDRLGKDGVQSETMHEVAAILDEAARKIERL 234
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: G8AT73_9PROT (PadR domain-containing protein n=37 Tax=Azospirillaceae TaxID=2829815 RepID=G8AT73_9PROT) HSP 1 Score: 186 bits (471), Expect = 6.560e-57 Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+AD+PR GY LIRA+EELTGG YVPSPG++YPTL++L+EMGH+A+ +EGARK FAVT EGTA LA+ A V+ALFARLA LAT TD P+RRAM NL+AVL+HRLGR+GV TVH AV+I+DEAAQRIERL
Sbjct: 62 IADEPRHGYNLIRAVEELTGGGYVPSPGVIYPTLSLLEEMGHIAKADAEGARKPFAVTPEGTAQLAQDAATVDALFARLAALATRRAHTDGAPIRRAMENLKAVLMHRLGREGVDADTVHAAVSILDEAAQRIERL 197
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A6A7LXC3_9PROT (PadR family transcriptional regulator n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7LXC3_9PROT) HSP 1 Score: 184 bits (466), Expect = 1.010e-55 Identity = 92/136 (67.65%), Postives = 113/136 (83.09%), Query Frame = 1
Query: 1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
+ADQPR GY LIRAIEELTGG+YVPSPG++YPTLT+L +MG + E + G RK FAVTA+GTA L ++ EVE LFARLA+LA++ +RTD PVRRAMGNLR VL+ RLGRDGVQ +T+HE AI+DEAA++IERL
Sbjct: 95 IADQPRHGYELIRAIEELTGGAYVPSPGVIYPTLTLLQDMGRIEEATAAGPRKPFAVTADGTAELVAKKQEVETLFARLAQLASMRERTDGGPVRRAMGNLRTVLLDRLGRDGVQTETMHEVAAILDEAARKIERL 230 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig59011.1.1 >prot_P-wetherbeei_contig59011.1.1 ID=prot_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp MVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARback to top mRNA from alignment at P-wetherbeei_contig59011:3..502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig59011.1.1 ID=mRNA_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=500bp|location=Sequence derived from alignment at P-wetherbeei_contig59011:3..502+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig59011:3..502+ >mRNA_P-wetherbeei_contig59011.1.1 ID=mRNA_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig59011:3..502+ (Phaeothamnion wetherbeei SAG_119_79)back to top |