mRNA_P-wetherbeei_contig58998.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58998.1.1
Unique NamemRNA_P-wetherbeei_contig58998.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A495RV86_SPHMI (Septal ring factor EnvC (AmiA/AmiB activator) n=1 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RV86_SPHMI)

HSP 1 Score: 259 bits (662), Expect = 1.500e-83
Identity = 154/167 (92.22%), Postives = 157/167 (94.01%), Query Frame = 1
Query:    1 AVTTARVSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPPRPARAAA-PLPFPYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            AVTTARVSALLEAVQP LRTRTAEYRRALVDSRAVQARLV SK+QLLAANTELSQAIRQLD +Q  LRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFD+S GTNARRLAPPRP RAAA PLPFPYLQPAAG IVEGFADMS VGVRARGITLATRKGAQVVA
Sbjct:  119 AVTTARVSALLEAVQPTLRTRTAEYRRALVDSRAVQARLVTSKQQLLAANTELSQAIRQLDDMQTALRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDESAGTNARRLAPPRPIRAAAAPLPFPYLQPAAGRIVEGFADMSRVGVRARGITLATRKGAQVVA 285          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A7W7B0B5_9SPHN (Septal ring factor EnvC (AmiA/AmiB activator) n=1 Tax=Sphingosinicella soli TaxID=333708 RepID=A0A7W7B0B5_9SPHN)

HSP 1 Score: 166 bits (421), Expect = 2.540e-47
Identity = 108/166 (65.06%), Postives = 115/166 (69.28%), Query Frame = 1
Query:    1 AVTTARVSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPPRPARAAAPLPFPYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            AVTTARVSALLEAVQP LR RT  YRR L  SRA+Q RL  SKRQLLAANT+LS                                   A+AMDLRGLAGAFDD   TN+RRLAPPRP R AAPLPFPYL+PAAGSIVEGF DMSHVGVRARG+TL+TRKGAQVVA
Sbjct:  119 AVTTARVSALLEAVQPTLRDRTNVYRRDLARSRALQTRLDTSKRQLLAANTDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAMDLRGLAGAFDDGVSTNSRRLAPPRPVRNAAPLPFPYLRPAAGSIVEGFEDMSHVGVRARGMTLSTRKGAQVVA 284          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A6I5WU98_9SPHN (Peptidoglycan DD-metalloendopeptidase family protein n=2 Tax=Novosphingobium sp. Gsoil 351 TaxID=2675225 RepID=A0A6I5WU98_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-7
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   25 ALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQA----DLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPP----RPARAAA------PLPFP-----YLQPAAGSIVEGFADMSHVG-VRARGITLATRKGAQVVA 498
            A+LE++ PA+R +TA  R  ++ +R +QA +  ++  L      L++    L G++       RA R   +READ    +A  LA +A DL  L G  + +G    R  A P    RPA+  A      P+  P     Y+ P AG+IV GF + S  G  R+RGIT+A R GAQV+A
Sbjct:  154 AVLESMLPAVRRQTAGLRAGILRARQLQAAVRQAQSGLRGDQARLAERRAALVGIETRQRLSSRAARGDANREAD----RALALAEEARDLTSLMGTLEQAGALRQRLAALPGPMLRPAQPGAARIEVSPVASPTAGLDYILPLAGTIVTGFGEASSGGGSRSRGITIAARSGAQVIA 327          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A518RJJ5_9SPHN (Peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Sphingomonas suaedae TaxID=2599297 RepID=A0A518RJJ5_9SPHN)

HSP 1 Score: 56.2 bits (134), Expect = 3.220e-6
Identity = 59/174 (33.91%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   19 VSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPPRPAR---------AAAPLPF-----PYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            V A+L AV P +R RTA+ R  +  +R ++     + + L      L      L   +A+ R +     R+A  E  +A  L  +A DL  L     ++  T A   A P P           AAAP P      PY  P AGS+V G  ++S  GVR+RG+TLAT  GAQ+VA
Sbjct:  144 VRAVLGAVTPIMRERTADIRAEVARTRRLREGAQTAVKSLADGRARLQTERLALVSAEAEHRLKSAGYSRDAMFESDRALALGEQARDLVDLMDTLGEAAETRAALEALPGPLPRPDEGDAEVAAAPPPARGGPPPYRLPVAGSVVTGLGEISDTGVRSRGLTLATWSGAQIVA 317          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A270B8G9_9SPHN (Metalloendopeptidase n=1 Tax=Sphingopyxis sp. GW247-27LB TaxID=2012632 RepID=A0A270B8G9_9SPHN)

HSP 1 Score: 55.5 bits (132), Expect = 5.970e-6
Identity = 60/176 (34.09%), Postives = 81/176 (46.02%), Query Frame = 1
Query:   25 ALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNA----------RRLAPPRPARAAAPLPFP--------YLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            A+L+AV P +R+RTA  RR L D R  Q +   + + L A+  EL+    +L  ++ + R     L   A  E  +A  L  KA D+  L    +  G   A          R   P R A  AAP   P        Y  P  G IV G  +++  GVR+RGIT+A R G QVVA
Sbjct:  150 AVLDAVMPVIRSRTAGVRRELADLRTAQRQQAIALKALGASKAELAARRDELTRLENEGRLHARDLMSSARLEADRALGLGEKARDIVELMDTLEADGAVRAELAELAGPLPRPRDPARAAITAAPPAAPAADMTRSAYRLPVVGRIVAGLGEVNDSGVRSRGITIAARPGGQVVA 325          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A1T5DL96_9SPHN (Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB n=3 Tax=Sphingopyxis TaxID=165697 RepID=A0A1T5DL96_9SPHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.100e-5
Identity = 60/176 (34.09%), Postives = 85/176 (48.30%), Query Frame = 1
Query:   25 ALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNAR--RLAPPRP------------ARAAAPLPF----PYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            A+L+AV P +R+RTAE RR L + R+VQ +   + + L  +  EL+    +L  ++ + R     L   A  E  +A  L  KA D+  L  + +      A   +LA P P            A  AAP        Y  P  G IVEG  +++  GVR+RGIT+A R G QVVA
Sbjct:  150 AVLDAVMPVIRSRTAEVRRELAELRSVQQQQAIALKALGTSKAELAVRRDELTRLENEGRLRARDLMSSARLEADRALGLGEKARDIVELMDSLEADSAVRAELAQLAGPLPRPRDPASAEIPAAAVAAPAAGMSRGAYRLPVVGRIVEGLGEVNDSGVRSRGITIAARPGGQVVA 325          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A2A4FV99_9SPHN (Metalloendopeptidase n=2 Tax=Rhizorhabdus dicambivorans TaxID=1850238 RepID=A0A2A4FV99_9SPHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.130e-5
Identity = 39/96 (40.62%), Postives = 47/96 (48.96%), Query Frame = 1
Query:  271 KAMDLRGLAGAFDDSGGTNARR-------LAPPRPARAAAP-------------LPFPYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            +A D+  L G+ DD     AR        L P RP RA AP              P PY  P  G +V G  ++S  GVRARG+TLA  +GAQVVA
Sbjct:  266 RAKDIADLIGSLDDQAAIRARLASLPGPILRPARPGRAPAPPRTELQRLADASNAPPPYRLPVLGRLVSGMGELSESGVRARGLTLAAARGAQVVA 361          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: A0A258H0J6_9SPHN (Metalloendopeptidase n=2 Tax=unclassified Sphingomonas TaxID=196159 RepID=A0A258H0J6_9SPHN)

HSP 1 Score: 54.3 bits (129), Expect = 1.490e-5
Identity = 59/175 (33.71%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   19 VSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPPRP----------ARAAAPLPF-----PYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            V A+L AV PA+R RTA+ R  +  +R ++     + + L  +   L      L   + + R +     REA  E  +A  L  +A DL  L     ++  T A   A P P          A  A P P      PY  P +G++V G  ++S  GVRARG+TLAT  GAQVVA
Sbjct:  143 VRAVLGAVTPAVRARTADIRAEIARTRRMREGAQLAAKALADSRARLQNDRLALVRAEGEHRLKSVGYRREAIFESDRALALGEQARDLVDLMDTMGEAAETRAALEALPGPLPRPADGDAAATEATPAPKRIGPPPYRLPVSGTVVTGLGELSDTGVRARGLTLATWPGAQVVA 317          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: UPI0012E7D21B (peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=Sphingomonas profundi TaxID=2681549 RepID=UPI0012E7D21B)

HSP 1 Score: 52.8 bits (125), Expect = 5.140e-5
Identity = 59/175 (33.71%), Postives = 78/175 (44.57%), Query Frame = 1
Query:   25 ALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLA--------PPRPARAAAPLP---------FPYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            A+L    P +R RTA  R+ + +   +QA+   +   L A    L      L  ++AD R    +    A  E  +A  L  +A D+  L G   +     ARRLA        PP P  AAAP             Y  P  G +V G  ++S  GVRARG+TLA R GAQVVA
Sbjct:  167 AILAGQMPLVRARTAALRQDVDEGIRLQAQADRAAATLRAGQARLRAERTALARLEADRRGRAQTYTDSAMLEEDRATALGEQARDIVDLMGRIGEQAEV-ARRLASLPGPLPRPPIPGLAAAPAADALGAAPNRLRYRLPVVGKVVTGLGEVSEAGVRARGLTLAARPGAQVVA 340          
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Match: UPI00082F9150 (peptidoglycan DD-metalloendopeptidase family protein n=1 Tax=unclassified Sphingomonas TaxID=196159 RepID=UPI00082F9150)

HSP 1 Score: 52.0 bits (123), Expect = 9.250e-5
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   19 VSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAANTELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAGAFDDSGGTNARRLAPPRP----------ARAAAPLPFPYLQPAAGSIVEGFADMSHVGVRARGITLATRKGAQVVA 498
            V A+L A+ P +R RTA+ R  +  +R ++     + + L      L      L   + + R +     REA  E  +A  L  +A DL        ++  T A   A P P            AA   P PY  P AG+IV G  ++S  GVRARG+TLAT  GA++VA
Sbjct:  143 VRAVLGAITPEMRARTADIRAEIARTRQLRDGAQLAAKTLADGRARLQNDRLALVRAEGEHRLKSVGYRREAMFESDRALALGEQARDLVDQMDVMGEAAETQAALAALPGPLPRPTDGEAQVGAARSGPPPYRLPVAGTIVTGLGELSDTGVRARGLTLATAPGAEIVA 312          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A495RV86_SPHMI1.500e-8392.22Septal ring factor EnvC (AmiA/AmiB activator) n=1 ... [more]
A0A7W7B0B5_9SPHN2.540e-4765.06Septal ring factor EnvC (AmiA/AmiB activator) n=1 ... [more]
A0A6I5WU98_9SPHN3.800e-735.39Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A518RJJ5_9SPHN3.220e-633.91Peptidoglycan DD-metalloendopeptidase family prote... [more]
A0A270B8G9_9SPHN5.970e-634.09Metalloendopeptidase n=1 Tax=Sphingopyxis sp. GW24... [more]
A0A1T5DL96_9SPHN1.100e-534.09Septal ring factor EnvC, activator of murein hydro... [more]
A0A2A4FV99_9SPHN1.130e-540.63Metalloendopeptidase n=2 Tax=Rhizorhabdus dicambiv... [more]
A0A258H0J6_9SPHN1.490e-533.71Metalloendopeptidase n=2 Tax=unclassified Sphingom... [more]
UPI0012E7D21B5.140e-533.71peptidoglycan DD-metalloendopeptidase family prote... [more]
UPI00082F91509.250e-532.35peptidoglycan DD-metalloendopeptidase family prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58998contigP-wetherbeei_contig58998:3..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1112212.JH584235_gene2841
PFAMsPeptidase_M23
Model size498
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.24e-09
EggNOG OGsCOG4942@1|root,COG4942@2|Bacteria,1MY3E@1224|Proteobacteria,2TUSP@28211|Alphaproteobacteria,2K22Y@204457|Sphingomonadales
DescriptionMembrane-bound metallopeptidase
Cds size498
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.2796104-CDS-P-wetherbeei_contig58998:2..5001683186872.2796104-CDS-P-wetherbeei_contig58998:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58998 3..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58998.1.1prot_P-wetherbeei_contig58998.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58998 3..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58998.1.1

>prot_P-wetherbeei_contig58998.1.1 ID=prot_P-wetherbeei_contig58998.1.1|Name=mRNA_P-wetherbeei_contig58998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
AVTTARVSALLEAVQPALRTRTAEYRRALVDSRAVQARLVASKRQLLAAN
TELSQAIRQLDGVQADLRAERDSLDREADEERAQARTLAAKAMDLRGLAG
AFDDSGGTNARRLAPPRPARAAAPLPFPYLQPAAGSIVEGFADMSHVGVR
ARGITLATRKGAQVVA
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mRNA from alignment at P-wetherbeei_contig58998:3..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58998.1.1 ID=mRNA_P-wetherbeei_contig58998.1.1|Name=mRNA_P-wetherbeei_contig58998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58998:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCACGACCGCCCGTGTCAGCGCGCTTCTGGAGGCCGTTCAACCAGC GCTTCGGACGCGCACCGCCGAATACCGGCGCGCGCTTGTCGACTCCCGCG CCGTGCAGGCCCGGCTTGTCGCGTCGAAGCGGCAGCTGCTCGCCGCCAAC ACCGAGCTTTCGCAGGCGATTCGCCAGCTCGATGGCGTGCAGGCCGACCT CCGCGCCGAACGCGACTCGCTCGATCGCGAGGCCGATGAGGAGCGCGCGC AGGCGCGCACGCTGGCCGCAAAGGCGATGGACCTGCGCGGTCTTGCGGGC GCATTCGATGACAGCGGGGGCACGAACGCCCGGCGGCTGGCGCCGCCCCG GCCCGCCCGCGCCGCCGCCCCGCTCCCCTTCCCCTATCTGCAACCCGCGG CGGGCAGCATCGTGGAGGGCTTCGCGGACATGAGCCATGTCGGCGTTCGT GCGCGCGGCATCACGCTTGCAACGCGCAAGGGCGCGCAGGTCGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58998:3..500+

>mRNA_P-wetherbeei_contig58998.1.1 ID=mRNA_P-wetherbeei_contig58998.1.1|Name=mRNA_P-wetherbeei_contig58998.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig58998:3..500+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCACGACCGCCCGTGTCAGCGCGCTTCTGGAGGCCGTTCAACCAGC
GCTTCGGACGCGCACCGCCGAATACCGGCGCGCGCTTGTCGACTCCCGCG
CCGTGCAGGCCCGGCTTGTCGCGTCGAAGCGGCAGCTGCTCGCCGCCAAC
ACCGAGCTTTCGCAGGCGATTCGCCAGCTCGATGGCGTGCAGGCCGACCT
CCGCGCCGAACGCGACTCGCTCGATCGCGAGGCCGATGAGGAGCGCGCGC
AGGCGCGCACGCTGGCCGCAAAGGCGATGGACCTGCGCGGTCTTGCGGGC
GCATTCGATGACAGCGGGGGCACGAACGCCCGGCGGCTGGCGCCGCCCCG
GCCCGCCCGCGCCGCCGCCCCGCTCCCCTTCCCCTATCTGCAACCCGCGG
CGGGCAGCATCGTGGAGGGCTTCGCGGACATGAGCCATGTCGGCGTTCGT
GCGCGCGGCATCACGCTTGCAACGCGCAAGGGCGCGCAGGTCGTGGCC
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