mRNA_P-wetherbeei_contig58997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58997.1.1
Unique NamemRNA_P-wetherbeei_contig58997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A6A7M5W9_9PROT (5,6-dimethylbenzimidazole synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6A7M5W9_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 1.030e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MTPAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            M P+F + FRA+FRDLVLWRRDVRRFRRDP+PR RI+AL+E
Sbjct:    1 MKPSFDSAFRAQFRDLVLWRRDVRRFRRDPLPRERIDALIE 41
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A521MCZ7_9HYPH (5,6-dimethylbenzimidazole synthase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MCZ7_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-11
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 MTPAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            MTP F A FRARFRDLVLWRRDVRRFR DP+   RI+ALLE
Sbjct:    1 MTPTFDAAFRARFRDLVLWRRDVRRFRPDPVEPARIDALLE 41
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A259MBP4_9PROT (5,6-dimethylbenzimidazole synthase n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MBP4_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 3.090e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            P F A FRA FR+LVLWRRDVRRFR DPIPR RI+ALLE
Sbjct:    5 PQFDAAFRAEFRELVLWRRDVRRFRTDPIPRERIDALLE 43
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A521QTN2_9HYPH (5,6-dimethylbenzimidazole synthase n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521QTN2_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 1.680e-10
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MTPAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            MTP F A FR  FRDLVLWRRDVRRFR DP+ R RI+ LLE
Sbjct:    4 MTPDFDAAFRKEFRDLVLWRRDVRRFRTDPVARERIDGLLE 44
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A7X0B2E1_9PROT (5,6-dimethylbenzimidazole synthase n=1 Tax=Nitrospirillum iridis TaxID=765888 RepID=A0A7X0B2E1_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-8
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            P F ADFRA FRDL+ WRRDVRRFR DP+P   +E LL+
Sbjct:    8 PDFDADFRAHFRDLLAWRRDVRRFRTDPLPHGLLERLLD 46
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A248K2K5_9PROT (5,6-dimethylbenzimidazole synthase n=7 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A248K2K5_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 3.590e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            P F ADFR+ FRDL++WRRDVRRFR DP+P   +E LL+
Sbjct:    9 PDFDADFRSHFRDLLVWRRDVRRFRTDPLPDGLLECLLD 47
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: V5SGN8_9HYPH (Cob(II)yrinic acid a,c-diamide reductase n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SGN8_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 5.090e-8
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            P FA++F  RFRDLVLWRRDVRRFR D +P   +E L+E
Sbjct:   11 PVFASEFSDRFRDLVLWRRDVRRFRTDALPEGAVERLIE 49
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A0J6R7Z7_9HYPH (Cob(II)yrinic acid a,c-diamide reductase n=3 Tax=Methylobacterium indicum TaxID=1775910 RepID=A0A0J6R7Z7_9HYPH)

HSP 1 Score: 54.7 bits (130), Expect = 9.250e-8
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALL 120
            P F ADFRARF DLV WRRDVRRFR DP+P   +   L
Sbjct:    5 PEFGADFRARFADLVAWRRDVRRFRTDPVPEDALRDCL 42
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: A0A1T4NYU4_9HYPH (Cob(II)yrinic acid a,c-diamide reductase n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4NYU4_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 1.380e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   13 FAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            F A FRA FRDLVLWRRDVRRFR DP+P   ++ L+E
Sbjct:   14 FDATFRATFRDLVLWRRDVRRFRTDPVPEKLLDDLIE 50
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BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Match: UPI0003B6A780 (5,6-dimethylbenzimidazole synthase n=1 Tax=Rhodopseudomonas sp. B29 TaxID=95607 RepID=UPI0003B6A780)

HSP 1 Score: 53.5 bits (127), Expect = 1.470e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 PAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE 123
            PAF   F+A+F +L+ WRRDVRRFRRDP+P   IE LL+
Sbjct:   21 PAFDDHFQAQFAELIAWRRDVRRFRRDPVPAEMIERLLD 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7M5W9_9PROT1.030e-1275.615,6-dimethylbenzimidazole synthase n=3 Tax=Alphapr... [more]
A0A521MCZ7_9HYPH1.090e-1178.055,6-dimethylbenzimidazole synthase n=1 Tax=Reyrane... [more]
A0A259MBP4_9PROT3.090e-1179.495,6-dimethylbenzimidazole synthase n=1 Tax=Rhodosp... [more]
A0A521QTN2_9HYPH1.680e-1073.175,6-dimethylbenzimidazole synthase n=8 Tax=Alphapr... [more]
A0A7X0B2E1_9PROT1.830e-866.675,6-dimethylbenzimidazole synthase n=1 Tax=Nitrosp... [more]
A0A248K2K5_9PROT3.590e-864.105,6-dimethylbenzimidazole synthase n=7 Tax=Nitrosp... [more]
V5SGN8_9HYPH5.090e-864.10Cob(II)yrinic acid a,c-diamide reductase n=1 Tax=H... [more]
A0A0J6R7Z7_9HYPH9.250e-865.79Cob(II)yrinic acid a,c-diamide reductase n=3 Tax=M... [more]
A0A1T4NYU4_9HYPH1.380e-767.57Cob(II)yrinic acid a,c-diamide reductase n=1 Tax=E... [more]
UPI0003B6A7801.470e-761.545,6-dimethylbenzimidazole synthase n=1 Tax=Rhodops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58997contigP-wetherbeei_contig58997:1..123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1205680.CAKO01000038_gene1509
PFAMsNitroreductase
Model size123
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00435,RC02413
KEGG koko:K04719
KEGG ReactionR09083
KEGG Pathwayko00740,ko01100,map00740,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009235,GO:0009236,GO:0009987,GO:0016491,GO:0016705,GO:0017144,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042364,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue5.37e-11
EggNOG OGsCOG0778@1|root,COG0778@2|Bacteria,1MZN8@1224|Proteobacteria,2TTDR@28211|Alphaproteobacteria,2JSEU@204441|Rhodospirillales
EC1.13.11.79
DescriptionNitroreductase family
Cds size123
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.2462456-CDS-P-wetherbeei_contig58997:0..1231683186872.2462456-CDS-P-wetherbeei_contig58997:0..123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58997 1..123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58997.1.1prot_P-wetherbeei_contig58997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58997 1..123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58997.1.1

>prot_P-wetherbeei_contig58997.1.1 ID=prot_P-wetherbeei_contig58997.1.1|Name=mRNA_P-wetherbeei_contig58997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MTPAFAADFRARFRDLVLWRRDVRRFRRDPIPRPRIEALLE
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mRNA from alignment at P-wetherbeei_contig58997:1..123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58997.1.1 ID=mRNA_P-wetherbeei_contig58997.1.1|Name=mRNA_P-wetherbeei_contig58997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig58997:1..123- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCCGGCCTTCGCCGCCGACTTCCGCGCCCGCTTTCGCGACCTGGT
GCTGTGGCGTCGCGATGTGCGCCGTTTTCGTCGCGATCCCATTCCGCGCC
CGCGCATCGAAGCCCTGCTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58997:1..123-

>mRNA_P-wetherbeei_contig58997.1.1 ID=mRNA_P-wetherbeei_contig58997.1.1|Name=mRNA_P-wetherbeei_contig58997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig58997:1..123- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCCGGCCTTCGCCGCCGACTTCCGCGCCCGCTTTCGCGACCTGGT
GCTGTGGCGTCGCGATGTGCGCCGTTTTCGTCGCGATCCCATTCCGCGCC
CGCGCATCGAAGCCCTGCTGGAA
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