mRNA_P-wetherbeei_contig58996.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58996.1.1
Unique NamemRNA_P-wetherbeei_contig58996.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.240e-28
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            GKK PKARLMASYYEKLTRIF VSENHLFHAYAWYKYY+LSRE+NK LT EER  QA  VLLA LAIP+V
Sbjct:  273 GKKVPKARLMASYYEKLTRIFLVSENHLFHAYAWYKYYTLSREYNKALTAEERTQQACCVLLAALAIPEV 342
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.100e-27
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            GKKTPKARLMASYYEKLTRIFWVSEN+LFHAYAWYK++SL  E+NKTLT+E ++ QA+ VLLA ++IPQ+
Sbjct:  275 GKKTPKARLMASYYEKLTRIFWVSENYLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQI 344
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A6H5KVX7_9PHAE (PCI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.160e-27
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            GKKTPKARLMASYYEKLTRIFWVSEN LFHAYAWYK++SL  E+NKTLT+E ++ QA+ VLLA ++IPQ+
Sbjct:   65 GKKTPKARLMASYYEKLTRIFWVSENFLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQI 134
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A812R606_SYMMI (TIF3A1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R606_SYMMI)

HSP 1 Score: 104 bits (259), Expect = 1.630e-24
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            GKKTPK RLMA+YYEKLTRIFWVSEN+LFHAYAWY++YSLS E+ K +  EE+ + ASSVLLATL IP +
Sbjct:  213 GKKTPKPRLMATYYEKLTRIFWVSENYLFHAYAWYRFYSLSCEYRKDIKPEEKSLFASSVLLATLCIPTI 282
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A6V1NAU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAU3_HETAK)

HSP 1 Score: 101 bits (252), Expect = 4.550e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQ 207
             KK PKARLMA+Y+E+LTRIFWVS+N LFHAYAW KYY L RE+NK LT EE+  QA  VLLA LA+P+
Sbjct:  274 NKKAPKARLMAAYFEQLTRIFWVSQNRLFHAYAWLKYYQLGREYNKVLTEEEKRAQAGKVLLAALAVPE 342
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A7S3L380_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L380_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.270e-22
Identity = 45/64 (70.31%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   13 PKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIP 204
            PKA+LMASYYEKLT +FWVSEN+LFHA+AWYKYYSL +EF++ ++ +++ VQAS+VLLATL IP
Sbjct:  244 PKAKLMASYYEKLTTLFWVSENYLFHAFAWYKYYSLYKEFHRGMSADQQRVQASAVLLATLCIP 307
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BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A1Z5KQK7_FISSO (Eukaryotic translation initiation factor 3 subunit A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQK7_FISSO)

HSP 1 Score: 96.7 bits (239), Expect = 9.940e-22
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 GKKTPKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQVY 213
            GK  PKA+LMA+YYEKLT +FWVSEN+LFHA+AWYKYYSL REF++ ++ E +  QAS+VLLA L IP  Y
Sbjct:  324 GKTPPKAKLMAAYYEKLTTLFWVSENYLFHAFAWYKYYSLCREFHRGMSEEIKQRQASAVLLAALCIPPNY 394
[Close]
BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A7S4R7B1_9STRA (Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7B1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.360e-21
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   13 PKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            PKA+LMA+YYEKLT +FWVSEN+LFHA+AWYKYY+L +EFN+ ++ E R +QAS+VLLA L IP V
Sbjct:  303 PKAKLMAAYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEFNRGMSVEMRQMQASAVLLAALCIPTV 368
[Close]
BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A7S1ULC2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1ULC2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.840e-21
Identity = 43/64 (67.19%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   13 PKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIP 204
            PKA+LMA+YYEKLT +FWVSEN+LFHA+AWYKYY+L +E+N++++ E + +QAS+VLLATL IP
Sbjct:   24 PKAKLMAAYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEYNRSMSDEMKQMQASAVLLATLCIP 87
[Close]
BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Match: A0A8J9S3E1_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3E1_PHATR)

HSP 1 Score: 95.1 bits (235), Expect = 3.440e-21
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   13 PKARLMASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASSVLLATLAIPQV 210
            PKA+LMASYYEKLT +FWVSEN+LFHA+AWYKYY+L +EFN+ ++ + + +QAS+VLLA L IP V
Sbjct:   62 PKAKLMASYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEFNRGMSEDTKRMQASAVLLAALCIPSV 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58996.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG33_9STRA8.240e-2882.86Eukaryotic translation initiation factor 3 subunit... [more]
D7FZL6_ECTSI2.100e-2775.71Eukaryotic translation initiation factor 3 subunit... [more]
A0A6H5KVX7_9PHAE5.160e-2775.71PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812R606_SYMMI1.630e-2472.86TIF3A1 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A6V1NAU3_HETAK4.550e-2469.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3L380_9STRA7.270e-2270.31Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5KQK7_FISSO9.940e-2266.20Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4R7B1_9STRA1.360e-2168.18Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1ULC2_9STRA1.840e-2167.19Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J9S3E1_PHATR3.440e-2166.67Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58996contigP-wetherbeei_contig58996:97..309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZL6
Preferred nameTIF32
PFAMsPCI
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K03254
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000131,GO:0001732,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0065003,GO:0070887,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue2.07e-22
EggNOG OGsKOG2072@1|root,KOG2072@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size186
COG categoryJ
BRITEko00000,ko00001,ko03012
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.2006853-UTR-P-wetherbeei_contig58996:96..1231683186872.2006853-UTR-P-wetherbeei_contig58996:96..123Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58996 97..123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.2120411-CDS-P-wetherbeei_contig58996:123..3091683186872.2120411-CDS-P-wetherbeei_contig58996:123..309Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58996 124..309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58996.1.1prot_P-wetherbeei_contig58996.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58996 124..309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58996.1.1

>prot_P-wetherbeei_contig58996.1.1 ID=prot_P-wetherbeei_contig58996.1.1|Name=mRNA_P-wetherbeei_contig58996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MASYYEKLTRIFWVSENHLFHAYAWYKYYSLSREFNKTLTTEERMVQASS
VLLATLAIPQVY
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mRNA from alignment at P-wetherbeei_contig58996:97..309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58996.1.1 ID=mRNA_P-wetherbeei_contig58996.1.1|Name=mRNA_P-wetherbeei_contig58996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig58996:97..309+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGAAGACCCCGAAGGCGCGGCTGATGGCATCGTACTACGAGAAGCT
GACGCGCATCTTCTGGGTGTCGGAGAACCACCTCTTCCACGCCTACGCTT
GGTACAAGTACTACTCGCTCAGTCGCGAGTTCAACAAGACGCTCACGACC
GAGGAGCGTATGGTGCAGGCGTCGTCCGTTCTGCTGGCCACGCTCGCCAT
CCCGCAGGTCTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58996:97..309+

>mRNA_P-wetherbeei_contig58996.1.1 ID=mRNA_P-wetherbeei_contig58996.1.1|Name=mRNA_P-wetherbeei_contig58996.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig58996:97..309+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATCGTACTACGAGAAGCTGACGCGCATCTTCTGGGTGTCGGAGAA
CCACCTCTTCCACGCCTACGCTTGGTACAAGTACTACTCGCTCAGTCGCG
AGTTCAACAAGACGCTCACGACCGAGGAGCGTATGGTGCAGGCGTCGTCC
GTTCTGCTGGCCACGCTCGCCATCCCGCAGGTCTAT
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