mRNA_P-wetherbeei_contig58990.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58990.1.1
Unique NamemRNA_P-wetherbeei_contig58990.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58990.1.1 vs. uniprot
Match: A0A5C7NIC3_9PROT (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NIC3_9PROT)

HSP 1 Score: 131 bits (330), Expect = 1.380e-33
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 1
Query:   16 ERVFGLGLIERHLKALRQRKVAVQAVFIDLGDSGEPDPAAARATW-PFPVRVTRGTGTIRERVAAAALGSPVLIVDADTLADARLYDFLATRSGDLVAADGDAILARLGDASRLQPGATTIAGAIPADAPRLTQAEFPGFIRNLRRTLPFYLFRVTNAAERK 498
            ERVFG+ LIERHLKALR +KV +  V ID GD         + T    P+RV  G+G +  R+A +A G  VL   A +L DARLY FLA ++ ++  AD  AIL RL    RL+PGA  +  A+ ++   L+Q+EFP F+R LRR+ P+YLF VT A  R+
Sbjct:   13 ERVFGMSLIERHLKALRHQKVELSEVVIDTGDQPASSIDVPQDTGIACPIRVVSGSGDVATRIARSAAGEDVLASTASSLIDARLYGFLAKQNENVAVADDGAILVRLTGTDRLEPGANDLLRAVGSNIRWLSQSEFPSFVRKLRRSTPYYLFSVTTAEHRR 174          
BLAST of mRNA_P-wetherbeei_contig58990.1.1 vs. uniprot
Match: A0A4R6WRN5_9PROT (Phosphatidylglycerophosphate synthase n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WRN5_9PROT)

HSP 1 Score: 123 bits (309), Expect = 1.600e-30
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   10 AAERVFGLGLIERHLKALRQRKVAVQAVFIDLGDSGEPDPAAARATWPFPVRVTRGTGTIRERVAAA-ALGSPVLIVDADTLADARLYDFLATRSGDLVAADGDAILARLG-DASRLQPGATTIAGAIPADAPRLTQAEFPGFIRNLRRTLPFYLFRVTNAAERKA 501
            A ERVFG+ LIERHLKA R +K+A+  V ID+GD+              PVR+ R +G+  ER+  A + G P++  DA TLAD RLY FLA +     A +  A++AR+  D + L   A T+  A  A  P + Q +FP F+  LRRTLPFYLF VTN AER++
Sbjct:   15 ATERVFGMTLIERHLKAARHQKLALSEVIIDIGDAATTPAFRGEPGLGCPVRILRESGSTTERLRRALSAGEPLIATDATTLADGRLYRFLADQKASGAARENRAVIARIEPDDAPLLIAAPTL-DATAATLPEIRQDDFPAFVAKLRRTLPFYLFAVTNGAERRS 179          
BLAST of mRNA_P-wetherbeei_contig58990.1.1 vs. uniprot
Match: A0A4R6WQK4_9PROT (Phosphatidylglycerophosphate synthase n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WQK4_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 1.280e-12
Identity = 63/178 (35.39%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   19 RVFGLGLIERHLKALRQRKVAVQAVFIDLGDSGEPDPAAARATWPFPVRVTRGTGTIRERV---AAAALGSPVLIVDADTLADARLYDFLATRSGDLVAADGDAILA----RLGDASRLQPGATTIAG-AIPAD--------------APRLTQAEFPGFIRNLRRTLPFYLFRVTNA 486
            +VFGL L+ERHL+AL++       + +DLG +G      A     F +   + +GT  ER+    A A  +P+L++D  TL DARL+  L   +      D  A+LA          RL PG   +AG AI AD                   Q +F GFIR LRRT+P+Y+FRV  A
Sbjct:   15 KVFGLTLVERHLQALKRSLPRPARIVVDLGGTGSKPEIDASLEKAFTIEWCQASGTFAERLNAFLAKAGEAPLLLLDGATLPDARLHAALVPLN------DSVAVLAPEAKERAAMIRLAPG--RLAGRAIAADDLAALAEILIANGTTRAYAQDQFDGFIRKLRRTIPYYMFRVETA 184          
BLAST of mRNA_P-wetherbeei_contig58990.1.1 vs. uniprot
Match: A0A5C5S911_9HYPH (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5S911_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 9.790e-5
Identity = 56/191 (29.32%), Postives = 79/191 (41.36%), Query Frame = 1
Query:   22 VFGLGLIERHLKALRQRKVAVQAVFIDLGDSGEPDPAAARATWPFPVRVTRGTGTIRERVAAAALGSP--VLIVDADTLADARLYDFLATRSGDLVAADGDAILARL------------------GDASRLQPGATTI----------AGAIPADAPRLTQAE-FPGFIRNLRRTLPFYLFRVTNAAERKA 501
            VFG+ L+ERH++A  +  V    + ID G +  P   A  A     +RV R  G    R+AA + G    V  V AD++ D RL+  LA R  D V   GD  + R                    D + L    T +          AG + + A R   AE F   +   RR +PF++ RV +   R A
Sbjct:   16 VFGMSLVERHIRAALKNGVPAAHIVIDSGTAAPPSLPADLAA--LGLRVLRAPGDAGTRLAAFSAGQADTVFAVSADSVVDPRLFAHLADRR-DSVVVTGDTTVPRALARTWSAVFGGWPETGSAADCAILLAAGTVVPAAADMHALGAGLLASGAARTLTAEGFNAHVALQRRDVPFWVRRVGDDMARAA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5C7NIC3_9PROT1.380e-3346.30CDP-alcohol phosphatidyltransferase family protein... [more]
A0A4R6WRN5_9PROT1.600e-3045.18Phosphatidylglycerophosphate synthase n=1 Tax=Dong... [more]
A0A4R6WQK4_9PROT1.280e-1235.39Phosphatidylglycerophosphate synthase n=1 Tax=Dong... [more]
A0A5C5S911_9HYPH9.790e-529.32CDP-alcohol phosphatidyltransferase family protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58990contigP-wetherbeei_contig58990:2..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380391.JIAS01000011_gene5121
PFAMsCDP-OH_P_transf
Model size501
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.74e-32
EggNOG OGsCOG0558@1|root,COG0558@2|Bacteria,1MYE7@1224|Proteobacteria,2TSMC@28211|Alphaproteobacteria,2JS2R@204441|Rhodospirillales
DescriptionCDP-alcohol phosphatidyltransferase
Cds size501
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.1755795-CDS-P-wetherbeei_contig58990:1..5021683186872.1755795-CDS-P-wetherbeei_contig58990:1..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58990 2..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58990.1.1prot_P-wetherbeei_contig58990.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58990 2..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58990.1.1

>prot_P-wetherbeei_contig58990.1.1 ID=prot_P-wetherbeei_contig58990.1.1|Name=mRNA_P-wetherbeei_contig58990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
AHRAAERVFGLGLIERHLKALRQRKVAVQAVFIDLGDSGEPDPAAARATW
PFPVRVTRGTGTIRERVAAAALGSPVLIVDADTLADARLYDFLATRSGDL
VAADGDAILARLGDASRLQPGATTIAGAIPADAPRLTQAEFPGFIRNLRR
TLPFYLFRVTNAAERKA
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mRNA from alignment at P-wetherbeei_contig58990:2..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58990.1.1 ID=mRNA_P-wetherbeei_contig58990.1.1|Name=mRNA_P-wetherbeei_contig58990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58990:2..502- (Phaeothamnion wetherbeei SAG_119_79)
GCGCATCGCGCGGCCGAGCGTGTGTTCGGCCTTGGGCTGATCGAACGTCA CCTGAAGGCCCTGCGCCAGCGCAAGGTGGCCGTGCAGGCCGTTTTCATCG ACCTTGGCGACAGCGGCGAGCCGGACCCGGCGGCTGCACGGGCGACATGG CCATTCCCGGTGCGCGTGACGCGCGGGACCGGCACGATCCGCGAGCGCGT CGCGGCGGCCGCGCTGGGATCACCCGTGCTGATCGTCGATGCCGATACCC TGGCGGATGCGCGACTCTACGACTTTCTCGCCACCCGATCCGGTGACCTG GTCGCCGCCGACGGCGACGCGATCCTGGCGCGTCTCGGCGACGCGTCGCG CCTGCAGCCCGGCGCGACAACAATCGCCGGCGCGATCCCCGCCGACGCGC CGCGCCTGACGCAGGCCGAGTTTCCCGGCTTCATCCGCAATCTGCGCCGC ACCCTGCCCTTCTATCTGTTTCGCGTGACCAATGCGGCCGAGCGCAAAGC G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58990:2..502-

>mRNA_P-wetherbeei_contig58990.1.1 ID=mRNA_P-wetherbeei_contig58990.1.1|Name=mRNA_P-wetherbeei_contig58990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58990:2..502- (Phaeothamnion wetherbeei SAG_119_79)
GCGCATCGCGCGGCCGAGCGTGTGTTCGGCCTTGGGCTGATCGAACGTCA
CCTGAAGGCCCTGCGCCAGCGCAAGGTGGCCGTGCAGGCCGTTTTCATCG
ACCTTGGCGACAGCGGCGAGCCGGACCCGGCGGCTGCACGGGCGACATGG
CCATTCCCGGTGCGCGTGACGCGCGGGACCGGCACGATCCGCGAGCGCGT
CGCGGCGGCCGCGCTGGGATCACCCGTGCTGATCGTCGATGCCGATACCC
TGGCGGATGCGCGACTCTACGACTTTCTCGCCACCCGATCCGGTGACCTG
GTCGCCGCCGACGGCGACGCGATCCTGGCGCGTCTCGGCGACGCGTCGCG
CCTGCAGCCCGGCGCGACAACAATCGCCGGCGCGATCCCCGCCGACGCGC
CGCGCCTGACGCAGGCCGAGTTTCCCGGCTTCATCCGCAATCTGCGCCGC
ACCCTGCCCTTCTATCTGTTTCGCGTGACCAATGCGGCCGAGCGCAAAGC
G
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