mRNA_P-wetherbeei_contig58980.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58980.1.1
Unique NamemRNA_P-wetherbeei_contig58980.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A5S9NAS9_9HYPH (DNA gyrase inhibitor YacG n=2 Tax=unclassified Starkeya TaxID=2615126 RepID=A0A5S9NAS9_9HYPH)

HSP 1 Score: 90.1 bits (222), Expect = 2.780e-22
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 PCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPK 204
            PCPICGKPA E   PFCS RC DVDLHRW +G YA+PV EDDDEDG +    PSLAPK
Sbjct:   14 PCPICGKPAVEQYKPFCSSRCADVDLHRWLTGAYAIPVTEDDDEDGEE----PSLAPK 67
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: UPI001FF5A93D (DNA gyrase inhibitor YacG n=1 Tax=Starkeya koreensis TaxID=266121 RepID=UPI001FF5A93D)

HSP 1 Score: 89.4 bits (220), Expect = 5.450e-22
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   31 PCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPK 204
            PCPICGKP AE   PFCS RC D+DLHRW +G YA+PV EDDDEDG +    PSLAPK
Sbjct:   13 PCPICGKPPAEKYKPFCSSRCADIDLHRWLTGAYAIPVTEDDDEDGEE----PSLAPK 66
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A858X1Y1_9HYPH (DNA gyrase inhibitor YacG n=1 Tax=Starkeya sp. ORNL1 TaxID=2709380 RepID=A0A858X1Y1_9HYPH)

HSP 1 Score: 88.6 bits (218), Expect = 1.070e-21
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   31 PCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPK 204
            PCPICGKPA E   PFCS RC DVDLHRW SG YA+P VE+DDEDG    D P LAP+
Sbjct:   12 PCPICGKPAVEKYRPFCSSRCADVDLHRWLSGSYAIPAVEEDDEDG----DTPPLAPE 65
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: D7A0V2_STAND (DNA gyrase inhibitor YacG n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIMB 10456) TaxID=639283 RepID=D7A0V2_STAND)

HSP 1 Score: 86.7 bits (213), Expect = 6.710e-21
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   34 CPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPK 204
            CPICGKP+ E   PFCS RC DVDLHRW +G YA+PV EDDDEDG +    PSLAPK
Sbjct:   16 CPICGKPSVEKYKPFCSSRCADVDLHRWLTGAYAIPVTEDDDEDGEE----PSLAPK 68
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A537Q7M0_9PROT (DNA gyrase inhibitor YacG n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537Q7M0_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 7.530e-21
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 MSDPVVPRFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGED 183
            M DP+ P    CPICGKPAAE   PFCS+RC DVDLHRWFSG+YAVP  E + E+G + ED
Sbjct:    1 MPDPI-PGTRKCPICGKPAAERFRPFCSKRCADVDLHRWFSGRYAVPAAEQEAEEGARPED 60
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: UPI001BD09C56 (DNA gyrase inhibitor YacG n=1 Tax=Ancylobacter sp. VKM B-3255 TaxID=2836179 RepID=UPI001BD09C56)

HSP 1 Score: 86.3 bits (212), Expect = 8.360e-21
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   19 PRFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAP 201
            P   PCPICGKP  E   PFCS RC DVDLHRW +G YA+PV E+DDEDG +    PSLAP
Sbjct:    6 PAAKPCPICGKPMVEKYKPFCSSRCADVDLHRWLTGAYAIPVTEEDDEDGEE----PSLAP 62
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A371WX73_9HYPH (DNA gyrase inhibitor YacG n=1 Tax=Methylovirgula sp. 4M-Z18 TaxID=2293567 RepID=A0A371WX73_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-20
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   22 RFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGE 180
            + A CPICGKPA +   PFCS+RC DVDL+RWFSG YA+PV ED DEDG +GE
Sbjct:   11 KIATCPICGKPAVKEFRPFCSKRCADVDLNRWFSGTYAIPVTEDSDEDGEEGE 63
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A1Q4DHE5_9HYPH (DNA gyrase inhibitor YacG n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DHE5_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.130e-20
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   10 PVVPRFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPKD 207
            P +   APCPIC +PA E   PFCS+RC+DVDLHRW SG YAVPV EDDDEDG   +  P  +P+D
Sbjct:    2 PSLAPAAPCPICRRPAEEAFKPFCSKRCRDVDLHRWMSGVYAVPVKEDDDEDG---DGAPRTSPED 64
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: A0A1G4RT25_9HYPH (DNA gyrase inhibitor YacG n=4 Tax=Ancylobacter TaxID=99 RepID=A0A1G4RT25_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 2.590e-20
Identity = 38/58 (65.52%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   31 PCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVEDDDEDGTKGEDMPSLAPK 204
            PCPICGKP  E   PFCS RC D+DLHRW +G YA+PV E+DDEDG +    PSLAPK
Sbjct:   13 PCPICGKPMVEKYRPFCSARCADLDLHRWLTGAYAIPVTENDDEDGEE----PSLAPK 66
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BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Match: UPI001D0F3CD0 (DNA gyrase inhibitor YacG n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001D0F3CD0)

HSP 1 Score: 85.1 bits (209), Expect = 3.040e-20
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 MSDPVVPRFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVV-EDDDEDG 168
            M+ P  PR   CPICGKPA E   PFCS RCKD+DLHRW SG YA+P   +DDDEDG
Sbjct:   16 MAKPATPRLKKCPICGKPAQEATRPFCSDRCKDLDLHRWLSGAYAIPASGDDDDEDG 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S9NAS9_9HYPH2.780e-2270.69DNA gyrase inhibitor YacG n=2 Tax=unclassified Sta... [more]
UPI001FF5A93D5.450e-2268.97DNA gyrase inhibitor YacG n=1 Tax=Starkeya koreens... [more]
A0A858X1Y1_9HYPH1.070e-2168.97DNA gyrase inhibitor YacG n=1 Tax=Starkeya sp. ORN... [more]
D7A0V2_STAND6.710e-2168.42DNA gyrase inhibitor YacG n=1 Tax=Starkeya novella... [more]
A0A537Q7M0_9PROT7.530e-2163.93DNA gyrase inhibitor YacG n=1 Tax=Alphaproteobacte... [more]
UPI001BD09C568.360e-2163.93DNA gyrase inhibitor YacG n=1 Tax=Ancylobacter sp.... [more]
A0A371WX73_9HYPH1.100e-2067.92DNA gyrase inhibitor YacG n=1 Tax=Methylovirgula s... [more]
A0A1Q4DHE5_9HYPH1.130e-2060.61DNA gyrase inhibitor YacG n=1 Tax=Rhizobiales bact... [more]
A0A1G4RT25_9HYPH2.590e-2065.52DNA gyrase inhibitor YacG n=4 Tax=Ancylobacter Tax... [more]
UPI001D0F3CD03.040e-2064.91DNA gyrase inhibitor YacG n=1 Tax=Klebsiella pneum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58980contigP-wetherbeei_contig58980:62..277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog639283.Snov_0125
Preferred nameyacG
PFAMsYacG
Model size216
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09862
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-21
EggNOG OGsCOG3024@1|root,COG3024@2|Bacteria,1NGJ8@1224|Proteobacteria,2UJJF@28211|Alphaproteobacteria,3F017@335928|Xanthobacteraceae
DescriptionInhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
Cds size216
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.0576844-CDS-P-wetherbeei_contig58980:61..2771683186872.0576844-CDS-P-wetherbeei_contig58980:61..277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58980 62..277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58980.1.1prot_P-wetherbeei_contig58980.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58980 62..277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58980.1.1

>prot_P-wetherbeei_contig58980.1.1 ID=prot_P-wetherbeei_contig58980.1.1|Name=mRNA_P-wetherbeei_contig58980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MSDPVVPRFAPCPICGKPAAEGALPFCSRRCKDVDLHRWFSGKYAVPVVE
DDDEDGTKGEDMPSLAPKDER*
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mRNA from alignment at P-wetherbeei_contig58980:62..277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58980.1.1 ID=mRNA_P-wetherbeei_contig58980.1.1|Name=mRNA_P-wetherbeei_contig58980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig58980:62..277+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGATCCCGTTGTTCCCCGTTTTGCGCCTTGTCCCATCTGCGGCAA
ACCGGCCGCCGAGGGCGCGCTCCCGTTCTGTTCCAGGCGCTGCAAGGACG
TCGATCTGCATCGGTGGTTCTCGGGGAAATACGCCGTTCCGGTGGTCGAG
GACGACGATGAGGACGGGACCAAGGGTGAGGATATGCCGAGCCTCGCACC
GAAGGATGAGCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58980:62..277+

>mRNA_P-wetherbeei_contig58980.1.1 ID=mRNA_P-wetherbeei_contig58980.1.1|Name=mRNA_P-wetherbeei_contig58980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig58980:62..277+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGATCCCGTTGTTCCCCGTTTTGCGCCTTGTCCCATCTGCGGCAA
ACCGGCCGCCGAGGGCGCGCTCCCGTTCTGTTCCAGGCGCTGCAAGGACG
TCGATCTGCATCGGTGGTTCTCGGGGAAATACGCCGTTCCGGTGGTCGAG
GACGACGATGAGGACGGGACCAAGGGTGAGGATATGCCGAGCCTCGCACC
GAAGGATGAGCGCTAG
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