mRNA_P-wetherbeei_contig58965.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58965.1.1
Unique NamemRNA_P-wetherbeei_contig58965.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig58965.1.1 vs. uniprot
Match: G4R787_PELHB (Putative dehydrogenase (Pyrroloquinoline-quinone) n=1 Tax=Pelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2) TaxID=1082931 RepID=G4R787_PELHB)

HSP 1 Score: 57.8 bits (138), Expect = 5.300e-9
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   76 GETAYQSNCAGCHGLDLRKVDPEAPDLTESPYRFGW 183
            GE A+QSNC+GCHG DLR VD  APDL    ++F W
Sbjct:   41 GEEAFQSNCSGCHGTDLRSVDSNAPDLRGPSFKFSW 76
[Close]
BLAST of mRNA_P-wetherbeei_contig58965.1.1 vs. uniprot
Match: A0A1G7VH47_9HYPH (Cytochrome c553 n=2 Tax=Pelagibacterium luteolum TaxID=440168 RepID=A0A1G7VH47_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 3.090e-7
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   64 QAKTGETAYQSNCAGCHGLDLRKVDPEAPDLTESPYRFGW 183
            Q + GE A+ +NCAGCHG DLR VD  APDL    +  GW
Sbjct:   36 QIERGEDAFMTNCAGCHGDDLRSVDSNAPDLRGPVFAAGW 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58965.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
G4R787_PELHB5.300e-961.11Putative dehydrogenase (Pyrroloquinoline-quinone) ... [more]
A0A1G7VH47_9HYPH3.090e-755.00Cytochrome c553 n=2 Tax=Pelagibacterium luteolum T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58965contigP-wetherbeei_contig58965:260..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1082931.KKY_1193
PFAMsCytochrome_CBB3
Model size183
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-10
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria,1QWV1@1224|Proteobacteria,2UJZ2@28211|Alphaproteobacteria,3N9A1@45401|Hyphomicrobiaceae
DescriptionCytochrome C oxidase, cbb3-type, subunit III
Cds size183
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.7958806-CDS-P-wetherbeei_contig58965:259..4421683186871.7958806-CDS-P-wetherbeei_contig58965:259..442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58965 260..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58965.1.1prot_P-wetherbeei_contig58965.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58965 260..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58965.1.1

>prot_P-wetherbeei_contig58965.1.1 ID=prot_P-wetherbeei_contig58965.1.1|Name=mRNA_P-wetherbeei_contig58965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
AASGSSSATVSTSTWNSPSACQAKTGETAYQSNCAGCHGLDLRKVDPEAP
DLTESPYRFGW
back to top

mRNA from alignment at P-wetherbeei_contig58965:260..442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58965.1.1 ID=mRNA_P-wetherbeei_contig58965.1.1|Name=mRNA_P-wetherbeei_contig58965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig58965:260..442+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCATCGGGGTCTTCTTCGGCGACGGTCTCGACGTCGACCTGGAATTC
TCCATCGGCTTGCCAGGCCAAGACCGGCGAGACCGCCTATCAGTCGAATT
GCGCCGGCTGCCACGGACTCGATCTGCGCAAGGTCGACCCGGAAGCGCCT
GACCTGACCGAAAGTCCGTACCGATTTGGCTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58965:260..442+

>mRNA_P-wetherbeei_contig58965.1.1 ID=mRNA_P-wetherbeei_contig58965.1.1|Name=mRNA_P-wetherbeei_contig58965.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig58965:260..442+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCATCGGGGTCTTCTTCGGCGACGGTCTCGACGTCGACCTGGAATTC
TCCATCGGCTTGCCAGGCCAAGACCGGCGAGACCGCCTATCAGTCGAATT
GCGCCGGCTGCCACGGACTCGATCTGCGCAAGGTCGACCCGGAAGCGCCT
GACCTGACCGAAAGTCCGTACCGATTTGGCTGG
back to top