mRNA_P-wetherbeei_contig58951.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58951.1.1
Unique NamemRNA_P-wetherbeei_contig58951.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A6H5K120_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K120_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.390e-28
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    4 ISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            ISA PVVELRGG+PVG+WMG+P+ KVF LCV GNM PIP+ILLALRS  V++LAKPVLDRA+EKAA  GD  SQ 
Sbjct:  191 ISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPIILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQA 265          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A835YGM4_9STRA (Putative small multi-drug export protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.470e-27
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            LISA PVVELRGGIPVGLWMGLP+ KVF LCV GNM PIP+ILLALRS  V+ + KP LDRA+ KA   GDA+ Q 
Sbjct:   50 LISAMPVVELRGGIPVGLWMGLPIAKVFGLCVAGNMVPIPLILLALRSSAVQNVLKPFLDRARSKAKEFGDAEKQA 125          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A7S3RB84_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RB84_9SPIT)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-23
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            L+SA P+VELRGGIPVGLWMGLP+ +V  LC++GNM PIP IL+ALRS  V++L +P+L RA++K  A+G  D  V
Sbjct:    8 LLSAAPLVELRGGIPVGLWMGLPVLQVMLLCIIGNMLPIPFILIALRSPWVKKLFRPILSRAEKKTKAIGAHDRWV 83          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A7S1UC67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC67_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.710e-20
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQVR 231
            LISA PVVELRGG+PVG+WMGLP+ K   LCV GNM PI  +L ALR  LVR++  P+L RA+ KA A  D  +QVR
Sbjct:  140 LISAMPVVELRGGVPVGIWMGLPIWKTALLCVTGNMLPILPLLAALRLPLVRKIMSPILKRAQSKAEAFADKSTQVR 216          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A812XYB3_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XYB3_SYMPI)

HSP 1 Score: 86.3 bits (212), Expect = 4.220e-20
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            LISA P+VELRGG+PVGLWMGL + +V  LC+VGNM PIP+IL ALR   ++QL  P+L RA +K   +G  D  V
Sbjct:   15 LISALPLVELRGGVPVGLWMGLAVPQVMLLCIVGNMIPIPLILAALRIDQIKQLLSPLLKRAAQKTEPIGAHDRWV 90          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A7S2Y2N1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2N1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.910e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALG 210
            +ISA PVVELRGGIPVG WMGLPL  V ALCVVGN+ PI  +L AL++K ++++ KPVLDRA EK+  LG
Sbjct:  184 IISAMPVVELRGGIPVGQWMGLPLLNVLALCVVGNLIPIIPLLAALKNKTIQKVMKPVLDRAAEKSKGLG 253          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A6U3YD80_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YD80_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.440e-20
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            LISA PVVELRG IPVG WMGLPL KV  LC+VGNM PI  IL  LR   V++L KPVLDRA+ KA+A  D  S+ 
Sbjct:  112 LISAMPVVELRGAIPVGAWMGLPLPKVLGLCIVGNMLPIAPILYLLRFGPVQRLLKPVLDRAQSKASAFKDERSRA 187          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A7S2BIQ8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIQ8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.040e-19
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   19 VVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAA 204
            VVELRG IPVG+W+ LP+T VF LCV GNM PIP+IL ALRSK V+++ KP+LDRA+ KA A
Sbjct:    1 VVELRGAIPVGVWLDLPITTVFPLCVAGNMVPIPIILFALRSKFVQKVMKPILDRAQHKAEA 62          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: B8BZQ1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZQ1_THAPS)

HSP 1 Score: 85.9 bits (211), Expect = 1.240e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALG 210
            +ISA PVVELRG +PVG+WMGLP+TKV  +CV+GNMAPI  +L  LR+  ++ L  P+L RA++K+A+LG
Sbjct:    4 IISALPVVELRGAVPVGVWMGLPITKVLPVCVLGNMAPIVPLLFLLRNDKLKNLMSPILSRAEKKSASLG 73          
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Match: A0A813DY87_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DY87_POLGL)

HSP 1 Score: 87.0 bits (214), Expect = 5.810e-19
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKLVRQLAKPVLDRAKEKAAALGDADSQV 228
            L+SA P+VELRGG+PVGLWMG+ + +V  LC++GNM PIP+I+LALRS  +++L +P+L+RA  K  A+G  D  V
Sbjct:  168 LLSAMPLVELRGGVPVGLWMGMSVPQVMLLCILGNMIPIPLIILALRSPRIKRLLQPLLNRAATKMEAIGAHDRWV 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K120_9PHAE3.390e-2873.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGM4_9STRA2.470e-2771.05Putative small multi-drug export protein-domain-co... [more]
A0A7S3RB84_9SPIT2.740e-2360.53Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S1UC67_9STRA1.710e-2061.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A812XYB3_SYMPI4.220e-2057.89Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A7S2Y2N1_9STRA6.910e-2065.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U3YD80_9STRA7.440e-2064.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BIQ8_9STRA1.040e-1967.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B8BZQ1_THAPS1.240e-1958.57Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A813DY87_POLGL5.810e-1955.26Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58951contigP-wetherbeei_contig58951:267..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLW4
PFAMsSm_multidrug_ex
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.93e-29
EggNOG OGs28NC2@1|root,2QUXG@2759|Eukaryota
DescriptionPutative small multi-drug export protein
Cds size234
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.7299855-CDS-P-wetherbeei_contig58951:266..5001683186871.7299855-CDS-P-wetherbeei_contig58951:266..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58951 267..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58951.1.1prot_P-wetherbeei_contig58951.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58951 267..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58951.1.1

>prot_P-wetherbeei_contig58951.1.1 ID=prot_P-wetherbeei_contig58951.1.1|Name=mRNA_P-wetherbeei_contig58951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
LISATPVVELRGGIPVGLWMGLPLTKVFALCVVGNMAPIPVILLALRSKL
VRQLAKPVLDRAKEKAAALGDADSQVR*
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mRNA from alignment at P-wetherbeei_contig58951:267..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58951.1.1 ID=mRNA_P-wetherbeei_contig58951.1.1|Name=mRNA_P-wetherbeei_contig58951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig58951:267..500- (Phaeothamnion wetherbeei SAG_119_79)
CTCATCTCCGCCACGCCCGTAGTGGAGCTGCGCGGCGGCATCCCTGTGGG GCTCTGGATGGGGCTGCCGCTGACCAAGGTCTTTGCGCTGTGCGTCGTCG GCAACATGGCCCCCATTCCCGTGATCCTGTTGGCGCTGCGCTCCAAGCTG GTGCGGCAGCTGGCAAAGCCCGTGCTGGACCGCGCCAAAGAGAAGGCAGC GGCGCTCGGCGACGCGGACTCGCAGGTGAGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58951:267..500-

>mRNA_P-wetherbeei_contig58951.1.1 ID=mRNA_P-wetherbeei_contig58951.1.1|Name=mRNA_P-wetherbeei_contig58951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig58951:267..500- (Phaeothamnion wetherbeei SAG_119_79)
CTCATCTCCGCCACGCCCGTAGTGGAGCTGCGCGGCGGCATCCCTGTGGG
GCTCTGGATGGGGCTGCCGCTGACCAAGGTCTTTGCGCTGTGCGTCGTCG
GCAACATGGCCCCCATTCCCGTGATCCTGTTGGCGCTGCGCTCCAAGCTG
GTGCGGCAGCTGGCAAAGCCCGTGCTGGACCGCGCCAAAGAGAAGGCAGC
GGCGCTCGGCGACGCGGACTCGCAGGTGAGATAA
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