mRNA_P-wetherbeei_contig5891.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5891.1.2
Unique NamemRNA_P-wetherbeei_contig5891.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: A0A7S1GNB9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNB9_CYCTE)

HSP 1 Score: 230 bits (586), Expect = 2.050e-69
Identity = 123/239 (51.46%), Postives = 160/239 (66.95%), Query Frame = 1
Query:   40 AAMDDPLLGGA-GEWARFWSDRDLLAEIRKDVMRTLPESPLFQEERG--GAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLE 747
            A  DDPL   A  +W +F+ +  LL EIRKDV+RT P+   F E     G   YAALERILFV+A+LN GVRYVQGMNE+ GT+Y V A D   EWA  AEAD++F F  +MT++RD+FV  +D SDTG+QGR+ ++  +L  HDPE+  HL    +D   YA+RW TTLLSREF LPDT+RLWD++FA    D      ++CV+M++  R  LL  DF   ++LLQ+YP T+V  LLE
Sbjct:  159 AVHDDPLSTDADSKWFQFFENASLLDEIRKDVVRTHPDLYFFLEPENNLGQRRYAALERILFVWAKLNKGVRYVQGMNEIIGTLYFVLANDFNEEWACEAEADSYFLFNILMTEMRDVFVPDMDESDTGIQGRISNMASLLSLHDPEVRCHLVDIGIDASFYAIRWLTTLLSREFLLPDTIRLWDSMFASTHKDN--FLRYVCVTMVMLIRDDLLKGDFSTCLRLLQSYPSTNVDNLLE 395          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: F0YM84_AURAN (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM84_AURAN)

HSP 1 Score: 223 bits (569), Expect = 1.730e-68
Identity = 111/224 (49.55%), Postives = 148/224 (66.07%), Query Frame = 1
Query:   79 WARFWSDRDLLAEIRKDVMRTLPESPLFQEERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLER 750
            W +   D  L  EI KD+MRT P+   F+   GG     ++ERILF+YA+LNPGVRYVQGMNEV GTI+ V A+D   EW  +AE DAFF FT +M ++RD+++ SLD SD GL G++  L  +L +HDPEL  HL  +Q+DP  Y+LRW TTLL+REF L DT+RLWD + ++  + R       C++M+L QR  LL  DF   + LLQNYP +D   LL++
Sbjct:  102 WTQKQHDYVLRKEIHKDIMRTHPDHHFFE---GGTLRRQSMERILFIYAKLNPGVRYVQGMNEVLGTIFYVLASDSNEEWGANAEPDAFFCFTNIMAEMRDVYIHSLDNSDAGLSGKMSRLNALLQQHDPELWRHLDKNQLDPSYYSLRWITTLLAREFTLIDTIRLWDTILSE--ISRVDFLCHFCLTMILAQRETLLAGDFSFCLYLLQNYPASDPNVLLKQ 320          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: A0A7S1ZGV5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZGV5_TRICV)

HSP 1 Score: 220 bits (561), Expect = 2.010e-68
Identity = 116/224 (51.79%), Postives = 151/224 (67.41%), Query Frame = 1
Query:   49 DDPL-LGGAGEWARFWSDRDLLAEIRKDVMRTLPESPLFQEERG--GAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQ 711
            DDPL L     WA+F+ +  LL EIRKDV+RT P+   F E R   G   YAA+ERILFV+A+LN GVRYVQGMNE+ GTIY V A D   EWA  AEAD +F F T+M ++RD+FV  LD +DTG+QGR+ ++  +L  HDPE+  HL    +D   Y++RW TTLLSREF L DT+RLWD++FA    D      ++CV+M++  R +LL SDF   ++LLQ
Sbjct:   33 DDPLSLETDSRWAQFFENASLLDEIRKDVVRTHPDLHFFLEPRDNLGQRRYAAIERILFVWAKLNKGVRYVQGMNEIVGTIYFVLANDSNEEWACEAEADTYFLFNTLMVEMRDVFVPDLDDADTGIQGRISNMIALLSLHDPEVRCHLDDCGIDASFYSIRWLTTLLSREFRLADTIRLWDSMFASTHKDN--FLRYVCVTMVMVIRDQLLKSDFGSCLRLLQ 254          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: F1A0C5_DICPU (Rab-GAP TBC domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0C5_DICPU)

HSP 1 Score: 222 bits (566), Expect = 1.610e-66
Identity = 111/230 (48.26%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   46 MDDPLLGGA-GEWARFWSDRDLLAEIRKDVMRTLPESPLF--QEERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVT 726
            +D PL      +W  +W D+++L +I KDV RT P    F  Q+E G + HY AL RILF+YA+LNPG++YVQGMNE+ G +Y +FATD   EW  +AEAD+F+ FT +M+++RD F ++LDRSD G+   ++ L  +L K+D EL   L   +++P  Y+ RW T LLS+EFELPD +RLWDALFAD   DR  L  + C +ML+  R +L+ S F   +KLLQ+YP T
Sbjct:   95 LDHPLSTQTDSKWNEYWKDQNILIDIEKDVRRTFPSMHFFNYQDEDGKSIHYEALRRILFIYAKLNPGIKYVQGMNEILGHVYYIFATDPNKEWQANAEADSFYCFTNLMSEIRDNFCKTLDRSDVGIISSIKKLNGILKKNDFELWNDLEEKKINPQFYSFRWITLLLSQEFELPDVLRLWDALFADQ--DRFDLLYYFCCAMLICVRDQLITSTFADSLKLLQSYPNT 322          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: A0A7S2U981_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U981_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.620e-66
Identity = 113/225 (50.22%), Postives = 152/225 (67.56%), Query Frame = 1
Query:   79 WARFWSDRDLLAEIRKDVMRTLPESPLFQEERG--GAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLE 747
            W++F+ +  LL EIRKDVMRT P+   F EE    G   YAALERILF++A+LN GVRYVQGMNE+ GTIY V A D   EWA  AE D +F F ++M ++RD+FV  LD +DTG+QGR+ ++  +L  HDPE+  HL    +D   Y +RW TTLLSREF +PDT R+WD++FA    D      ++CV+M++  R +LL  DF   ++LLQ+YP TD+  LL+
Sbjct:   80 WSQFFENARLLDEIRKDVMRTHPDLSFFLEETRNLGQRRYAALERILFIWAKLNKGVRYVQGMNEIVGTIYFVLANDCNEEWACEAEVDTYFLFNSLMVEMRDVFVPDLDDADTGIQGRIANMMDLLALHDPEVKCHLDDCGIDATYYGIRWLTTLLSREFLVPDTTRIWDSMFASTHKDN--FLRYVCVTMVMVIREQLLKGDFSVCLRLLQSYPPTDMDRLLQ 302          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: A0A7S3V826_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V826_9STRA)

HSP 1 Score: 228 bits (581), Expect = 7.280e-66
Identity = 113/226 (50.00%), Postives = 152/226 (67.26%), Query Frame = 1
Query:   76 EWARFWSDRDLLAEIRKDVMRTLPESPLFQEERG--GAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLE 747
            +W  F  +  LL EIRKDV+RTLP+   + +     G   YAA+ERILF++A+LN GVRYVQGMNE+ G +Y V A D  AEWA  AEAD +F F T+M ++RD+FV  LD +DTG+QGR++++  +L  HDP++  HL    +DP  Y++RW TTLLSREF LPDT+RLWD++FA    D     V +C+ M++ + L  L  DF   ++LLQ YP TDV  LLE
Sbjct:  513 KWKHFLENASLLDEIRKDVVRTLPDLQFYLDTNKHLGLRRYAAIERILFIWAKLNKGVRYVQGMNEIVGIMYFVLANDSNAEWASQAEADTYFLFNTLMVEMRDIFVPDLDEADTGIQGRMQNMLSLLSLHDPDVRCHLDDCGIDPGFYSIRWLTTLLSREFLLPDTIRLWDSMFASTHKDNFMRYVCVCMVMIIREDL--LRGDFGTCLRLLQAYPATDVEKLLE 736          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: A0A4D9CZ84_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ84_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.310e-65
Identity = 108/223 (48.43%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   85 RFWSDRDLLAEIRKDVMRTLPESPLFQEERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNY-PVTDVAALLER 750
            RF +DR L  EIRKDV+RT P+   +Q++  G A Y AL RILF+YA+ N G RY+QGMNE+ GT++ V + D   EWAEHAEAD  F F  +M+ +RD+F+E +D SDTG++ +   L V+L++HDP LS H R   ++ H Y+LRW TTL  REF LPDT+ +WDALFAD   D +   ++ C+SML+ QR  +L   F   ++ LQ Y P  ++  LL R
Sbjct:  348 RFDADRSLFNEIRKDVVRTHPDQNFYQDQTFGTARYDALLRILFIYAKTNSGTRYIQGMNELAGTLFYVMSRDSDQEWAEHAEADTMFLFAQLMSQLRDVFIEKMDESDTGIESKFEQLEVLLERHDPTLSKHFRMIGLEAHFYSLRWITTLFCREFTLPDTIAVWDALFADK--DFSDFILYFCLSMLMEQRQEMLRCSFAKCLQSLQAYSPEAEMKRLLHR 568          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: K0SB70_THAOC (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SB70_THAOC)

HSP 1 Score: 215 bits (547), Expect = 8.880e-65
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 1
Query:  106 LLAEIRKDVMRTLPESPLFQE--ERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLE 747
            LL E+RKDV+RT P+   F E  +  G   YAALERILFV+A+LN GVRYVQGMNE+ GT+Y V A D    W+ HAEAD +F F  +M ++RD+F+  LD +DTG+ GR+ ++  +L  HDPE+  HL    +DP  Y++RW TTLLSREF LPDTVRLWD++FA    D      ++ V+M++  R RLL  DF   ++LLQ YP  D+  LLE
Sbjct:   68 LLDEVRKDVIRTHPDLRFFLEPADNLGQKRYAALERILFVWAKLNKGVRYVQGMNEIVGTLYFVLAQDSDESWSRHAEADTYFLFNALMVEIRDVFMAELDEADTGIHGRISNMITLLSLHDPEVRCHLDEVGIDPSFYSVRWLTTLLSREFLLPDTVRLWDSMFASTHKDN--FLRYVSVTMVMVIRDRLLAGDFSACLRLLQAYPPPDLDMLLE 281          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: D7FV22_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV22_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.680e-63
Identity = 115/264 (43.56%), Postives = 160/264 (60.61%), Query Frame = 1
Query:   49 DDPLLG-GAGEWARFWSDRDLLAEIRKDVMRTLPESPLF-----------------------------QEERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLER 750
            DDPL      EWA  WSD++L+  I +DV+RT+P+   +                             +  R G     AL RILFV+A+LNP   Y QGMNE+  T+Y V A+D+  EW  H EAD FF FT +M+++RD+F+ S+D S++GL G++ + +  L +HDPEL+ H+    +DP  +ALRWFTTLLSREF+LPDT+RLWD+LFA    DR+   VF+ V+++L QR  LL  DF   ++LLQ YP TDV  +L +
Sbjct:  618 DDPLSNKDTSEWAALWSDKELMQAIDQDVVRTMPDLAFYACRSIEDNDSDMVGSSASGEGGSGDSSEGERRRRGQERREALARILFVHAKLNPAESYTQGMNEIVATLYFVLASDENEEWNRHCEADTFFCFTNLMSEIRDVFLASMDESESGLHGKMEAFSRTLRQHDPELAEHMVSLALDPRYFALRWFTTLLSREFDLPDTIRLWDSLFAAQ--DRSTFLVFVFVTLMLAQRETLLAGDFASNLQLLQAYPPTDVPEILAQ 879          
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Match: K0RVX0_THAOC (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RVX0_THAOC)

HSP 1 Score: 215 bits (547), Expect = 1.750e-62
Identity = 110/216 (50.93%), Postives = 145/216 (67.13%), Query Frame = 1
Query:  106 LLAEIRKDVMRTLPESPLFQE--ERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFATDQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVMLDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFADHPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLE 747
            LL E+RKDV+RT P+   F E  +  G   YAALERILFV+A+LN GVRYVQGMNE+ GT+Y V A D    W+ HAEAD +F F  +M ++RD+F+  LD +DTG+ GR+ ++  +L  HDPE+  HL    +DP  Y++RW TTLLSREF LPDTVRLWD++FA    D      ++ V+M++  R RLL  DF   ++LLQ YP  D+  LLE
Sbjct:  297 LLDEVRKDVIRTHPDLRFFLEPADNLGQKRYAALERILFVWAKLNKGVRYVQGMNEIVGTLYFVLAQDSDESWSRHAEADTYFLFNALMVEIRDVFMAELDEADTGIHGRISNMITLLSLHDPEVRCHLDEVGIDPSFYSVRWLTTLLSREFLLPDTVRLWDSMFASTHKDN--FLRYVSVTMVMVIRDRLLAGDFSACLRLLQAYPPPDLDMLLE 510          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5891.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GNB9_CYCTE2.050e-6951.46Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
F0YM84_AURAN1.730e-6849.55Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A7S1ZGV5_TRICV2.010e-6851.79Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
F1A0C5_DICPU1.610e-6648.26Rab-GAP TBC domain-containing protein n=1 Tax=Dict... [more]
A0A7S2U981_9STRA3.620e-6650.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3V826_9STRA7.280e-6650.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9CZ84_9STRA3.310e-6548.43Rab-GAP TBC domain-containing protein n=2 Tax=Mono... [more]
K0SB70_THAOC8.880e-6550.93Rab-GAP TBC domain-containing protein (Fragment) n... [more]
D7FV22_ECTSI1.680e-6343.56Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
K0RVX0_THAOC1.750e-6250.93Rab-GAP TBC domain-containing protein (Fragment) n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5891contigP-wetherbeei_contig5891:478..2663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009041513.1
PFAMsIst1,RabGAP-TBC
Model size755
Max annot lvl2759|Eukaryota
KEGG koko:K03357,ko:K18469
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.84e-69
EggNOG OGsCOG5210@1|root,KOG4567@2759|Eukaryota
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-14_003870.1
Descriptionregulation of vesicle fusion
Cds size753
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03036,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5891.1.2prot_P-wetherbeei_contig5891.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5891 478..2663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186871.2528808-CDS-P-wetherbeei_contig5891:477..6031683186871.2528808-CDS-P-wetherbeei_contig5891:477..603Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 478..603 -
1683186871.2759583-CDS-P-wetherbeei_contig5891:841..9701683186871.2759583-CDS-P-wetherbeei_contig5891:841..970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 842..970 -
1683186871.2851899-CDS-P-wetherbeei_contig5891:1277..13521683186871.2851899-CDS-P-wetherbeei_contig5891:1277..1352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 1278..1352 -
1683186871.2941158-CDS-P-wetherbeei_contig5891:1611..17161683186871.2941158-CDS-P-wetherbeei_contig5891:1611..1716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 1612..1716 -
1683186871.303692-CDS-P-wetherbeei_contig5891:1961..20241683186871.303692-CDS-P-wetherbeei_contig5891:1961..2024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 1962..2024 -
1683186871.314111-CDS-P-wetherbeei_contig5891:2180..23091683186871.314111-CDS-P-wetherbeei_contig5891:2180..2309Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 2181..2309 -
1683186871.324656-CDS-P-wetherbeei_contig5891:2537..26631683186871.324656-CDS-P-wetherbeei_contig5891:2537..2663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5891 2538..2663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5891.1.2

>prot_P-wetherbeei_contig5891.1.2 ID=prot_P-wetherbeei_contig5891.1.2|Name=mRNA_P-wetherbeei_contig5891.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
ERGAPEAVPEVAAAAMDDPLLGGAGEWARFWSDRDLLAEIRKDVMRTLPE
SPLFQEERGGAAHYAALERILFVYARLNPGVRYVQGMNEVCGTIYVVFAT
DQAAEWAEHAEADAFFAFTTVMTDVRDLFVESLDRSDTGLQGRLRSLTVM
LDKHDPELSAHLRYHQVDPHLYALRWFTTLLSREFELPDTVRLWDALFAD
HPVDRTALTVFLCVSMLLHQRLRLLHSDFPGIIKLLQNYPVTDVAALLER
*
back to top

mRNA from alignment at P-wetherbeei_contig5891:478..2663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5891.1.2 ID=mRNA_P-wetherbeei_contig5891.1.2|Name=mRNA_P-wetherbeei_contig5891.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2186bp|location=Sequence derived from alignment at P-wetherbeei_contig5891:478..2663- (Phaeothamnion wetherbeei SAG_119_79)
GAAAGAGGCGCACCCGAGGCGGTGCCAGAGGTGGCGGCGGCGGCGATGGA CGATCCGCTGCTCGGTGGGGCGGGCGAGTGGGCGCGCTTCTGGTCGGACC GCGACCTCTTGGCGGAGATCCGGAAGGTAAGCTTGTTTGGGCCATATTCG GTGCTTTACATCTCGTTGCCTCTTGGTCTCGGCTTGGAGCTGCTGTTCCT TAAACCCGTCTCATTTATTTCTGCCTTTGCCAAGCCGTCGCTCATCGCCA TTCTCCTTCCCCTCGTGGCTCGCCGCTTTCGACCCAACTGCTTGTGTGGT GTGGGAACCGGCGGCGGTTGTGGGGTGGCGGACGGCGGGCGGTTGGGCGT GCAGGACGTGATGCGGACGTTGCCGGAGTCTCCGCTTTTCCAGGAGGAGC GCGGCGGCGCGGCGCACTACGCGGCACTCGAGCGCATCCTCTTTGTCTAC GCCCGGCTCAACCCCGGCGTCCGCTATGTTCAGGTGAACGGCATGCGTTT CTCTTCTTTCTCGTTTTCTCGAATCATATGGTTGCTTTGCGCCTCGTGGA GCAGCCGCCGCATTCCCACAATTCGCCTTTGTCGGCGTTTTTGGTGTTGC TCAGCCCATGTTGGTTGGCATTTGTAAACTCTTTGGCAGGGAATGAACGA GGTTTGCGGGACGATTTACGTGGTATTCGCCACCGACCAAGCGGCAGAAT GGGTGAGCCTGAAAGAGGACTGGGACAGAGCACCCTAGGGAAGGGAGGTG TGGCCCGTGTCCCACTTTCTGATTGGTGTTGTGGCGGGTCTGCGGTGCCT ACCGTTGCTGAATGTATCTCGCCATCTCTCATGCCTCTTGACCATCCTTG CGAATGCGGTGCAGCAGTCCCTGGGCTCTGTTTATTCTCACATTCTCGCT CTCACTTTACGGCTTATGTGTCTGGAATGACTCGCCGGGTGTAACAGGCG GAGCACGCCGAGGCCGACGCCTTCTTTGCGTTTACGACTGTCATGACCGA CGTCCGAGACCTCTTCGTCGAGTCGCTCGACCGTTCCGACACAGGGTTGC AGGTCAGTTCTGCACGTTTCGGCTCCCTGTCGCTGCGAGACGCCGCTGCC AAGGAAAGTGCTACCAGCGCTTGATCTGCAAGCACAGGCGGTCCAAAGGC ACCACTGCTGCCGCCGCCGCCGCCGGCATTCGTCCTTTTTTATGCCTCTG GGGCTGTGGGATGGTTTTTGCTGTAAACTTTAACTATAACCATGTTCCTC ACAGCGGCGCTACCAAACCGCGGCGCTATCAAATTGTTTATGACCTTAAC CCGGGTGGCAGGGAAGATTGAGGAGCCTGACGGTAATGCTGGACAAGCAC GACCCCGAGCTGTCGGCACACCTTCGGTACCACCAGGTCGATTCGCTTGT GGCGGCAGACTCTGTTACCGCACCCGCCCCGCTCCTTTACCGCCGAGTTG CCGCTGCAAGGCCTCCGCCGGTGCCTACGCTGCTGTTACGCTACTTTCCG CTACACTGACTCGGAATGGACCCTGTTGCACTTGCTTCCGTCCGCCGACT GGTCCTGCGCTCGCGCTGCCGCTGCTCTCCGCCGCCGCCACCACTGTTAC GATCATCGATCGCTGCAACTCATTGCGACCGCCATTCTCGCTGCTGTTGT TGCCGCCGCCGCCGATGCCGTTGCCGCTGCGGGAGTGCTGCAGGTGGACC CACACCTGTACGCGCTGCGGTGGTTCACGACGCTGCTGTCGCGCGAGTTC GAGCTGCCCGACACGGTGCGGCTATGGGACGCCCTCTTTGCCGACCACCC CGTCGACCGCACTGCCCTCACTGTAAGAGCTGGAGCCAGCCCGCCAGGGC GAAAGGGGCGTATACTGCAAACGGACGCAGAAAGCAGGGCTAGACCTGGG CTATGTCTAGTGTGAGCAATGCTCGTTCCATTCCGTCTTGCCCCTTTGGA CTGGGTGGACATGCGCTGGGTTCTCAGCCGACCGGTCAGTCCTATCTTCT TTTGCAGTATCGGTAATCTGGCCGCTTGGTCCAATCCTTCCCTTCTATTT GCAACGCCAGGTGTTTCTGTGCGTCTCGATGCTCCTCCATCAGCGGCTGC GACTCCTCCACTCGGACTTTCCCGGGATCATCAAGCTTCTGCAGAACTAT CCCGTCACCGACGTCGCCGCGCTGCTCGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5891:478..2663-

>mRNA_P-wetherbeei_contig5891.1.2 ID=mRNA_P-wetherbeei_contig5891.1.2|Name=mRNA_P-wetherbeei_contig5891.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig5891:478..2663- (Phaeothamnion wetherbeei SAG_119_79)
GAAAGAGGCGCACCCGAGGCGGTGCCAGAGGTGGCGGCGGCGGCGATGGA
CGATCCGCTGCTCGGTGGGGCGGGCGAGTGGGCGCGCTTCTGGTCGGACC
GCGACCTCTTGGCGGAGATCCGGAAGGACGTGATGCGGACGTTGCCGGAG
TCTCCGCTTTTCCAGGAGGAGCGCGGCGGCGCGGCGCACTACGCGGCACT
CGAGCGCATCCTCTTTGTCTACGCCCGGCTCAACCCCGGCGTCCGCTATG
TTCAGGGAATGAACGAGGTTTGCGGGACGATTTACGTGGTATTCGCCACC
GACCAAGCGGCAGAATGGGCGGAGCACGCCGAGGCCGACGCCTTCTTTGC
GTTTACGACTGTCATGACCGACGTCCGAGACCTCTTCGTCGAGTCGCTCG
ACCGTTCCGACACAGGGTTGCAGGGAAGATTGAGGAGCCTGACGGTAATG
CTGGACAAGCACGACCCCGAGCTGTCGGCACACCTTCGGTACCACCAGGT
GGACCCACACCTGTACGCGCTGCGGTGGTTCACGACGCTGCTGTCGCGCG
AGTTCGAGCTGCCCGACACGGTGCGGCTATGGGACGCCCTCTTTGCCGAC
CACCCCGTCGACCGCACTGCCCTCACTGTGTTTCTGTGCGTCTCGATGCT
CCTCCATCAGCGGCTGCGACTCCTCCACTCGGACTTTCCCGGGATCATCA
AGCTTCTGCAGAACTATCCCGTCACCGACGTCGCCGCGCTGCTCGAGAGG
TGA
back to top