mRNA_P-wetherbeei_contig5889.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5889.1.1
Unique NamemRNA_P-wetherbeei_contig5889.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5889.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5889contigP-wetherbeei_contig5889:737..3368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMP8
Model size2543
Max annot lvl2880.D8LMP8|-
Hectar predicted targeting categorymitochondrion
Exons2
Evalue0.000195
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size2166
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.7938938-UTR-P-wetherbeei_contig5889:736..7961683186870.7938938-UTR-P-wetherbeei_contig5889:736..796Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5889 737..796 -
1683186870.8095171-UTR-P-wetherbeei_contig5889:885..10691683186870.8095171-UTR-P-wetherbeei_contig5889:885..1069Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5889 886..1069 -
1683186870.843082-UTR-P-wetherbeei_contig5889:3235..33681683186870.843082-UTR-P-wetherbeei_contig5889:3235..3368Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5889 3236..3368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.8251123-CDS-P-wetherbeei_contig5889:1069..32351683186870.8251123-CDS-P-wetherbeei_contig5889:1069..3235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5889 1070..3235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5889.1.1prot_P-wetherbeei_contig5889.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5889 1070..3235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5889.1.1

>prot_P-wetherbeei_contig5889.1.1 ID=prot_P-wetherbeei_contig5889.1.1|Name=mRNA_P-wetherbeei_contig5889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=722bp
MILLRGLHRRRSFPWVQDARREQPLLRPRHDREHSATADDKRDVFSQRVA
ERRQIGGRQEKRPAATQSAAPFKSNTALRKEIARHGEARAWMEILRCLDN
LCTDTAESEKHGVTFYNLGMHWLRKCGQGKLAVSMLATMRRRGYQPNAVS
YSIAAAACNDLANKGRGLALLEEMRADGVVPVAAVFDPLIRVCLKAGDTT
KAISLLQDACRRHGRREGGDSGGVGIGGKSGGDNGGDGGGAGSGRANETK
PDSTLPAVTFNACTYACAKRGDSRGALAVLAAMKRCGGGGAAALTPTAVI
YAGCIAACVNGRESGEVHERKGIARRLWGEMRAAGIRPNVYAYASYAAVH
ARSLDGAGAVALLREMEAAGMPANPVVFGSCVDAFLLGGDVDGALVLLRE
ATEKNRRPKRTASIGAGAGGGAGAEGGAGAGGGARAGAGAVPDARAYLRV
VVSCGAQGRWRDAVAVHEDAAAHVGLAVLGREGCGSVLQALRDGPTSASS
TAATGKTVAAGSGIGAAMDADRLLPQSCRSRAETDGAATADDADAAERLR
EADRIYSAYVDAGVLPCWGPAAAAAATAVAVAAAEAAAAPTARGVAGSAA
AAAAAAAEAAAVATAQPTELDLHGHTRPMARAALRRFLADATAWLATGPD
GGDGGSGGANDLIVVPGRGVNSLGGAGKQLVGEVRSFFGALEPPIAVAAV
PGNAGRLAVSRAGVEAWLAAQ*
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mRNA from alignment at P-wetherbeei_contig5889:737..3368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5889.1.1 ID=mRNA_P-wetherbeei_contig5889.1.1|Name=mRNA_P-wetherbeei_contig5889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2632bp|location=Sequence derived from alignment at P-wetherbeei_contig5889:737..3368- (Phaeothamnion wetherbeei SAG_119_79)
CGTTCAAGGAAAAACAGCATCCTACGCTGGCGAATTCAAGGCGGTGGCCC
AGAACTGCAGCTGTGAAAACGTCCGTTGAGAGGCCTTTGTTTTTCTCGTG
CTGCGGGGGGCCTGAGGAAATCTATTTCGCAAGATGATCCTGTTGCGAGG
TTTGCACAGACGGCGTTCATTTCCATGGGTTCAGGACGCACGACGAGAGC
AGCCTCTTCTGCGACCGCGGCACGATCGGGAGCACTCTGCTACAGCCGAT
GACAAGAGAGATGTTTTCTCCCAGAGGGTTGCCGAGAGACGACAGATAGG
CGGCAGGCAGGAGAAACGCCCTGCTGCAACGCAAAGCGCCGCTCCGTTCA
AGAGTAATACGGCACTCAGAAAAGAAATCGCGCGGCACGGTGAGGCACGA
GCCTGGATGGAGATCCTCCGGTGCCTCGACAACCTTTGCACAGATACTGC
CGAGAGCGAGAAGCACGGGGTCACATTTTACAACCTCGGCATGCACTGGC
TGCGAAAGTGCGGCCAGGGCAAACTGGCGGTATCGATGCTGGCAACGATG
CGACGGAGAGGCTACCAGCCCAACGCCGTCTCGTACAGCATCGCCGCGGC
GGCATGTAACGACCTCGCAAACAAGGGCAGAGGGCTTGCGCTATTGGAAG
AGATGCGCGCCGATGGCGTCGTGCCCGTCGCGGCCGTTTTTGACCCGCTG
ATCCGCGTCTGCCTAAAGGCCGGCGACACCACAAAGGCGATCTCGCTTTT
GCAAGATGCGTGCCGGCGGCATGGCCGGCGCGAGGGCGGTGATAGCGGCG
GAGTGGGTATCGGCGGCAAAAGCGGCGGCGACAACGGCGGCGATGGCGGC
GGCGCCGGAAGCGGCCGAGCCAACGAGACAAAGCCAGACTCCACGCTCCC
CGCCGTGACCTTTAACGCTTGCACCTACGCCTGTGCGAAAAGGGGCGACT
CCCGGGGCGCTCTGGCCGTGCTGGCGGCAATGAAGCGTTGCGGTGGCGGC
GGCGCGGCCGCGCTGACGCCGACCGCCGTCATCTATGCCGGCTGCATCGC
GGCCTGCGTGAACGGCCGCGAGAGTGGGGAGGTCCACGAGCGGAAGGGCA
TCGCACGGCGACTGTGGGGCGAGATGCGCGCGGCGGGGATCCGCCCCAAC
GTTTATGCCTATGCGTCGTACGCTGCGGTCCACGCCCGCTCCCTGGACGG
CGCAGGAGCGGTCGCGTTGTTGCGGGAGATGGAAGCAGCCGGCATGCCGG
CGAACCCCGTCGTCTTTGGCAGCTGCGTCGACGCCTTCCTTCTCGGCGGC
GACGTCGACGGCGCGCTGGTGCTGTTGCGCGAGGCAACTGAGAAGAACCG
CCGGCCGAAGCGGACGGCCAGTATCGGAGCCGGAGCCGGAGGCGGAGCCG
GAGCCGAAGGGGGAGCCGGAGCCGGAGGCGGAGCCAGAGCCGGAGCCGGA
GCCGTGCCGGACGCCCGGGCTTACCTCCGCGTCGTCGTCTCCTGCGGAGC
GCAGGGCCGGTGGCGCGACGCCGTCGCAGTTCACGAGGATGCTGCCGCCC
ATGTCGGCCTCGCGGTGCTGGGTCGGGAAGGCTGCGGCTCCGTTCTGCAG
GCGCTGCGGGACGGCCCCACCTCCGCTTCTTCTACCGCCGCGACCGGCAA
AACCGTCGCCGCCGGTTCTGGCATAGGAGCGGCGATGGACGCCGACAGGC
TGTTGCCGCAAAGTTGCCGCAGTAGAGCCGAGACTGACGGGGCGGCGACT
GCGGACGACGCCGACGCTGCGGAGCGCCTGCGGGAAGCGGACCGGATCTA
CTCGGCGTACGTGGACGCCGGCGTCCTGCCGTGCTGGGGCCCAGCGGCGG
CGGCGGCAGCTACGGCGGTGGCGGTGGCGGCAGCGGAAGCGGCTGCTGCC
CCGACGGCGCGCGGTGTGGCGGGTAGTGCGGCGGCAGCGGCAGCGGCAGC
GGCAGAGGCGGCGGCGGTGGCGACGGCTCAGCCGACTGAGCTTGACCTCC
ACGGCCACACGCGGCCCATGGCGCGGGCGGCGCTGCGGCGCTTCCTTGCC
GACGCGACGGCCTGGTTGGCGACTGGACCAGACGGCGGCGACGGCGGCAG
CGGTGGCGCCAACGACCTGATTGTGGTACCAGGTCGCGGTGTCAACTCGC
TAGGCGGCGCTGGGAAGCAGTTGGTTGGCGAAGTGCGCAGTTTCTTCGGG
GCGCTGGAGCCGCCGATCGCCGTAGCAGCCGTGCCGGGCAATGCGGGCCG
CCTGGCGGTGTCGAGGGCCGGCGTCGAGGCCTGGCTGGCCGCACAGTAGC
AGAATAAGCAGCTGCAGCGGCAGCAGCGACCGCCGAAGCAGCGGTGGCCA
GAGTGAGAGGAGGCTCTGGAGGCGCCACCGGAAATTCCCTGCGCCGCTGC
AGCTGTTCTCATGCACGCAGCTCGTCCCAGCAGACGTAACTGATTGTTGT
AACGCCCGACGGCGGATTTCTTTGCAGATACAGGCAAGCATTTCCAATTT
TTTTGTTTTCTTGTCTTGTCTGTGTTGCACATGCTCCTACCTCCAGATCC
CTTTTTCCTCTCCCGCTTTCAGAAAATCGTAGAGAATCGAATTAAGCTCG
CTGGTGAGCAAAGGCGACCGGCAAGCGAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5889:737..3368-

>mRNA_P-wetherbeei_contig5889.1.1 ID=mRNA_P-wetherbeei_contig5889.1.1|Name=mRNA_P-wetherbeei_contig5889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2166bp|location=Sequence derived from alignment at P-wetherbeei_contig5889:737..3368- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCTGTTGCGAGGTTTGCACAGACGGCGTTCATTTCCATGGGTTCA
GGACGCACGACGAGAGCAGCCTCTTCTGCGACCGCGGCACGATCGGGAGC
ACTCTGCTACAGCCGATGACAAGAGAGATGTTTTCTCCCAGAGGGTTGCC
GAGAGACGACAGATAGGCGGCAGGCAGGAGAAACGCCCTGCTGCAACGCA
AAGCGCCGCTCCGTTCAAGAGTAATACGGCACTCAGAAAAGAAATCGCGC
GGCACGGTGAGGCACGAGCCTGGATGGAGATCCTCCGGTGCCTCGACAAC
CTTTGCACAGATACTGCCGAGAGCGAGAAGCACGGGGTCACATTTTACAA
CCTCGGCATGCACTGGCTGCGAAAGTGCGGCCAGGGCAAACTGGCGGTAT
CGATGCTGGCAACGATGCGACGGAGAGGCTACCAGCCCAACGCCGTCTCG
TACAGCATCGCCGCGGCGGCATGTAACGACCTCGCAAACAAGGGCAGAGG
GCTTGCGCTATTGGAAGAGATGCGCGCCGATGGCGTCGTGCCCGTCGCGG
CCGTTTTTGACCCGCTGATCCGCGTCTGCCTAAAGGCCGGCGACACCACA
AAGGCGATCTCGCTTTTGCAAGATGCGTGCCGGCGGCATGGCCGGCGCGA
GGGCGGTGATAGCGGCGGAGTGGGTATCGGCGGCAAAAGCGGCGGCGACA
ACGGCGGCGATGGCGGCGGCGCCGGAAGCGGCCGAGCCAACGAGACAAAG
CCAGACTCCACGCTCCCCGCCGTGACCTTTAACGCTTGCACCTACGCCTG
TGCGAAAAGGGGCGACTCCCGGGGCGCTCTGGCCGTGCTGGCGGCAATGA
AGCGTTGCGGTGGCGGCGGCGCGGCCGCGCTGACGCCGACCGCCGTCATC
TATGCCGGCTGCATCGCGGCCTGCGTGAACGGCCGCGAGAGTGGGGAGGT
CCACGAGCGGAAGGGCATCGCACGGCGACTGTGGGGCGAGATGCGCGCGG
CGGGGATCCGCCCCAACGTTTATGCCTATGCGTCGTACGCTGCGGTCCAC
GCCCGCTCCCTGGACGGCGCAGGAGCGGTCGCGTTGTTGCGGGAGATGGA
AGCAGCCGGCATGCCGGCGAACCCCGTCGTCTTTGGCAGCTGCGTCGACG
CCTTCCTTCTCGGCGGCGACGTCGACGGCGCGCTGGTGCTGTTGCGCGAG
GCAACTGAGAAGAACCGCCGGCCGAAGCGGACGGCCAGTATCGGAGCCGG
AGCCGGAGGCGGAGCCGGAGCCGAAGGGGGAGCCGGAGCCGGAGGCGGAG
CCAGAGCCGGAGCCGGAGCCGTGCCGGACGCCCGGGCTTACCTCCGCGTC
GTCGTCTCCTGCGGAGCGCAGGGCCGGTGGCGCGACGCCGTCGCAGTTCA
CGAGGATGCTGCCGCCCATGTCGGCCTCGCGGTGCTGGGTCGGGAAGGCT
GCGGCTCCGTTCTGCAGGCGCTGCGGGACGGCCCCACCTCCGCTTCTTCT
ACCGCCGCGACCGGCAAAACCGTCGCCGCCGGTTCTGGCATAGGAGCGGC
GATGGACGCCGACAGGCTGTTGCCGCAAAGTTGCCGCAGTAGAGCCGAGA
CTGACGGGGCGGCGACTGCGGACGACGCCGACGCTGCGGAGCGCCTGCGG
GAAGCGGACCGGATCTACTCGGCGTACGTGGACGCCGGCGTCCTGCCGTG
CTGGGGCCCAGCGGCGGCGGCGGCAGCTACGGCGGTGGCGGTGGCGGCAG
CGGAAGCGGCTGCTGCCCCGACGGCGCGCGGTGTGGCGGGTAGTGCGGCG
GCAGCGGCAGCGGCAGCGGCAGAGGCGGCGGCGGTGGCGACGGCTCAGCC
GACTGAGCTTGACCTCCACGGCCACACGCGGCCCATGGCGCGGGCGGCGC
TGCGGCGCTTCCTTGCCGACGCGACGGCCTGGTTGGCGACTGGACCAGAC
GGCGGCGACGGCGGCAGCGGTGGCGCCAACGACCTGATTGTGGTACCAGG
TCGCGGTGTCAACTCGCTAGGCGGCGCTGGGAAGCAGTTGGTTGGCGAAG
TGCGCAGTTTCTTCGGGGCGCTGGAGCCGCCGATCGCCGTAGCAGCCGTG
CCGGGCAATGCGGGCCGCCTGGCGGTGTCGAGGGCCGGCGTCGAGGCCTG
GCTGGCCGCACAGTAG
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