mRNA_P-wetherbeei_contig5887.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5887.2.1
Unique NamemRNA_P-wetherbeei_contig5887.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5887.2.1 vs. uniprot
Match: A0A835ZB74_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB74_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.610e-30
Identity = 106/314 (33.76%), Postives = 142/314 (45.22%), Query Frame = 1 
Query:  283 SLWSTACLTHVACEALRLEAKHLI-----LRIRPAPSQDIVEVFGNQAVSLAVSLYVSTCLLFGGSYAFSQAATPASVVATXXXXXXXXXXXXXXXXXXXXNVKSAAAVSAALMPPPLFLTPAAAAATNVPLFQHLGALLLAYILLDTAHLVRAWRLAPNAPMLLHHALFGAVLAIGVALEQRPEQFRMHAVLFGAELSTPLLNLRWILTKGLGYRPRALLATLSLGFAAIFFATRIVGYGLLLLEM---HADPRSDVHLWR----------------------LAMPPPVAASFATLLWVAFALNVYWAWLIV 1134
            SLW TA  T+ ACEALR+ A  L+      R   AP + I E FG QA+SLAVS Y    L     YA  +                                             P   T  AA A  + L  H+  +L  Y++ DT+HL+R W L+ N  MLLHHA+F  VL +G A  Q P  +R+H VLF AELSTPLLNLRWIL     Y+ R L+A LS+ FA +F  +R+  YG L+ ++       + DV L R                      L+ P      F   ++ ++ LN+YW  +I+
Sbjct:   38 SLWHTAWSTYAACEALRMVAVWLLPLWWRRRRGGAPERAIRESFGTQAMSLAVSTYTVAHLAQLRLYASWEL--------------------------------------------PFLHT--AADADCIALIHHMTVVLGTYVICDTSHLIRTWHLSSNPAMLLHHAIFSVVLGLGAANPQLPPHYRIHVVLFSAELSTPLLNLRWILRWVAHYKGR-LVAPLSMAFALLFLFSRVGLYGALIADLVKKQPHRQLDVRLLRAACCLHTSFCGSSAWPVKTRRKLSFPRAQQDIFCAAVFCSYLLNLYWLIIII 304
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BLAST of mRNA_P-wetherbeei_contig5887.2.1 vs. uniprot
Match: A0A6H5K373_9PHAE (TLC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K373_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.030e-24
Identity = 63/165 (38.18%), Postives = 101/165 (61.21%), Query Frame = 1 
Query:  673 LGALLLAYILLDTAHLVRAWRLAPNAPMLLHHALFGAVLAIGVALEQRPEQFRMHAVLFGAELSTPLLNLRWILTK-GLGYRPRALLATLSLGFAAIFFATRIVGYGLLLLEMHADPRSDVHLW-RLAMPPPVAASFATLLWVAFALNVYWAWLIVAAFFKPRGR 1161
            L A++L+YI+ DT HLVR+WR+  N  ML+HH +F  +  +G+   Q P   R+H ++F AE+STPLLN RW++   GL ++   ++   S  F A+F  TRI+ Y  ++L++       + L+  L MP P+ + F   + V++ +N+YWAWLI+ A F   G+
Sbjct:  273 LMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLALFLVTRILMYLFMILDI-------IQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALFGNEGK 430
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BLAST of mRNA_P-wetherbeei_contig5887.2.1 vs. uniprot
Match: D7FKT8_ECTSI (TLC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.660e-24
Identity = 62/165 (37.58%), Postives = 100/165 (60.61%), Query Frame = 1 
Query:  673 LGALLLAYILLDTAHLVRAWRLAPNAPMLLHHALFGAVLAIGVALEQRPEQFRMHAVLFGAELSTPLLNLRWILTK-GLGYRPRALLATLSLGFAAIFFATRIVGYGLLLLEMHADPRSDVHLW-RLAMPPPVAASFATLLWVAFALNVYWAWLIVAAFFKPRGR 1161
            L A++L+YI+ DT HLVR+WR+  N  ML+HH +F  +  +G+   Q P   R+H ++F AE+STPLLN RW++   GL ++   ++   S  F  +F  TRI+ Y  ++L++       + L+  L MP P+ + F   + V++ +N+YWAWLI+ A F   G+
Sbjct:  253 LMAIMLSYIVHDTWHLVRSWRVNRNRVMLIHHFVFAVISIMGMRFRQLPIHMRIHFIMFSAEMSTPLLNGRWLMRHIGLVHKSHVIMIATSFSFLVLFLVTRIMLYLFMILDI-------IQLYAELIMPMPLRSVFLGAVVVSYVVNLYWAWLIIGALFGNEGK 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5887.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZB74_9STRA3.610e-3033.76TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5K373_9PHAE1.030e-2438.18TLC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FKT8_ECTSI3.660e-2437.58TLC domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5887contigP-wetherbeei_contig5887:936..3313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42254.XP_004605148.1
Preferred nameTMEM136
PFAMsTRAM_LAG1_CLN8
Model size1727
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal anchor
Exons3
Evalue2.29e-05
EggNOG OGsKOG4474@1|root,KOG4474@2759|Eukaryota,38G9S@33154|Opisthokonta,3BDPC@33208|Metazoa,3D0QH@33213|Bilateria,488KD@7711|Chordata,495CN@7742|Vertebrata,3J5KY@40674|Mammalia
DescriptionTRAM, LAG1 and CLN8 homology domains.
Cds size1218
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.5358894-UTR-P-wetherbeei_contig5887:935..12851683186870.5358894-UTR-P-wetherbeei_contig5887:935..1285Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5887 936..1285 -
1683186870.5781147-UTR-P-wetherbeei_contig5887:3154..33131683186870.5781147-UTR-P-wetherbeei_contig5887:3154..3313Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5887 3155..3313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.5477507-CDS-P-wetherbeei_contig5887:1285..17781683186870.5477507-CDS-P-wetherbeei_contig5887:1285..1778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5887 1286..1778 -
1683186870.5579333-CDS-P-wetherbeei_contig5887:2198..26741683186870.5579333-CDS-P-wetherbeei_contig5887:2198..2674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5887 2199..2674 -
1683186870.56819-CDS-P-wetherbeei_contig5887:2905..31541683186870.56819-CDS-P-wetherbeei_contig5887:2905..3154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5887 2906..3154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5887.2.1prot_P-wetherbeei_contig5887.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5887 1286..3154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5887.2.1

>prot_P-wetherbeei_contig5887.2.1 ID=prot_P-wetherbeei_contig5887.2.1|Name=mRNA_P-wetherbeei_contig5887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=406bp
MCQSREMRKTRGASVTSVGYVSLSFVFFYALAFYLQLPPATSLWSTACLT
HVACEALRLEAKHLILRIRPAPSQDIVEVFGNQAVSLAVSLYVSTCLLFG
GSYAFSQAATPASVVATTAVAAAAGTAGTASAAGGAGNVKSAAAVSAALM
PPPLFLTPAAAAATNVPLFQHLGALLLAYILLDTAHLVRAWRLAPNAPML
LHHALFGAVLAIGVALEQRPEQFRMHAVLFGAELSTPLLNLRWILTKGLG
YRPRALLATLSLGFAAIFFATRIVGYGLLLLEMHADPRSDVHLWRLAMPP
PVAASFATLLWVAFALNVYWAWLIVAAFFKPRGRPPPRPAPTRDDSEPAT
ATTEPLGKQEPGAWNGSGSSGGGHGGEGVRGMPTENEESAELVVDGGGGD
CCERS*
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mRNA from alignment at P-wetherbeei_contig5887:936..3313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5887.2.1 ID=mRNA_P-wetherbeei_contig5887.2.1|Name=mRNA_P-wetherbeei_contig5887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2378bp|location=Sequence derived from alignment at P-wetherbeei_contig5887:936..3313- (Phaeothamnion wetherbeei SAG_119_79)
AGCGAGTCGGGGCCTTAGGCCTCACGGCGTAGTCCGCGCATCTCAGCAAG
AACTCTTTGCTGTAGATGGAAACGAGAGGAAAGTGAAGTTCAACGAGACG
TTTGTACAGAGAAAGTCTTTCCAAGGTAGAAAGGTAGAAAGGGCTTGAAT
CCGGCAAAGATGTGCCAAAGCAGAGAGATGCGCAAGACGAGAGGCGCGAG
CGTGACCTCAGTAGGCTATGTATCTTTGAGCTTCGTGTTTTTCTATGCTT
TGGCTTTTTATCTTCAGCTTCCTCCAGCTACATCATTGTGGAGCACGGCG
TGTTTGACCCATGTCGCGTGCGAAGCGTTGCGCCTCGAAGCAAAACACTT
GATTCTGCGCATTCGGCCGGCACCATCGCAAGACATCGTGGAAGTATTCG
GGAACCAAGTAAGTCATCCGACATTCCACTGCAGGTGTGTTCTCAGTCAC
CAATCCGAATTAATTTCGTTTTCCCGGTTGCTCCATTGCTCACTGGGGGG
GTATGGGCCTGATTAGGTTCTCGTTTCCCCACTTTTATAAAAGTAAGCCT
GCAACTCTATCGCACAGAAGGGCGAAGTTATGCGAGAGGTTGTCTCTTCC
CTATTCGCTCTTTCTGCCGTGCCATCCCTAATGTCTTAGGCGGTTTCCCT
GGCGGTTTCGCTATACGTCAGCACTTGTCTACTCTTCGGCGGGAGTTACG
CGTTTTCTCAGGCCGCCACTCCTGCCTCGGTCGTCGCAACCACCGCGGTA
GCTGCAGCCGCCGGCACGGCCGGCACCGCAAGCGCTGCGGGCGGCGCTGG
CAATGTCAAAAGTGCTGCCGCCGTGTCCGCGGCCCTCATGCCACCGCCCC
TGTTCCTGACGCCGGCGGCGGCGGCGGCGACCAACGTGCCGCTCTTCCAG
CACCTGGGCGCGCTGCTCCTGGCGTACATTCTGCTGGACACGGCGCATCT
GGTGCGGGCGTGGCGGCTGGCGCCCAATGCGCCGATGCTGCTGCACCATG
CACTCTTTGGGGCGGTGCTGGCGATCGGCGTGGCGCTGGAGCAGCGTCCG
GAACAGTTCCGGATGCATGCCGTGCTGTTCGGCGCGGAGCTGTCGACGCC
GCTGCTCAACTTGCGGTGAGTCGTCTGTCCCAGGCGAAAAGGAGAGAGAA
TCTCTGCGCAGCCAATCGATTGTTTCTGCGTTTTCGGCTGTTGCCGGCGA
GCGGTGCAGGTTGCTTGCCGACCTTTGCTCCTAGTGTTCACCTGACGAAC
CTTTAAAGAATGCTCTGATTGTATGTTGGATTTCTCAATTTACTTACACA
ATGGGCTGGGCAAGCAGACGCAGAGTGGGCGTAGTCTTGTCAGGACCAGC
TTTTCTCTGGCCACAGATGACCATCGATTGAGACTGCTCTTTGGCGGTTT
TAAAGTCAAAATTGGCTCGTGTGCTCGTACACAGGGATGAACAGCCTCAG
CGTTTTCTGGATGGTGCCTAAGCTCTTTTGTCTGTCCATCAAGGCTTTCT
GGCATTCCTTCCCCTCCGCTGCCGCTCCTCGGCAGGTGGATTCTCACCAA
GGGCCTCGGCTACCGGCCCCGTGCCCTCCTCGCGACGCTCTCCCTCGGCT
TCGCCGCCATCTTCTTCGCCACGCGCATCGTCGGTTACGGGCTGCTACTC
TTGGAGATGCACGCCGACCCGCGCAGCGACGTGCACCTATGGCGGCTGGC
GATGCCGCCTCCCGTCGCCGCCTCCTTTGCAACGCTTCTCTGGGTGGCGT
TCGCGCTCAACGTCTACTGGGCGTGGCTGATCGTGGCGGCGTTCTTCAAG
CCGCGTGGGCGGCCGCCGCCACGGCCGGCTCCGACGAGAGATGATTCGGA
GCCGGCGACGGCAACGACTGAGCCTTTGGGGAAGCAGGAGCCCGGTGCAT
GGAACGGCAGCGGCAGCAGCGGCGGCGGGCACGGCGGTGAAGGTGTTAGA
GGCATGCCGACTGAAAACGAGGAAAGTGCCGAACTGGTTGTGGACGGCGG
TGGCGGTGACTGCTGCGAAAGGAGTTGACGATGGCAGCCATGGCAGCGGC
GGACATGGGATGCGGCAGCGGCGACGTCGGCAGCTGCGACTGCAAGCTGC
GCGGCGGCGGCTTCGTTGTTGCCCCAGTGACCACCACTTCTATTTGAGGT
TTGATGCTTGTTAGTTTCCATCCGGGCTTGGATAGCCAGATTGTTGTGCC
CGTTCTTTTCGCTGTTCAGCACAGCAAACGCCCTGTAAATGACTCCTTTG
TCAGTTAACTTCAACGTCTAACGGTTTGTCCGGCGCGTGTAGCCAACAGG
AAACGGGGAGTAGGTTAGCTTAAACCGAAGGTGGGCGGCGCCCCATGAAA
ATCCTGTGATAGCTTGGGAGGAATTTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5887:936..3313-

>mRNA_P-wetherbeei_contig5887.2.1 ID=mRNA_P-wetherbeei_contig5887.2.1|Name=mRNA_P-wetherbeei_contig5887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1218bp|location=Sequence derived from alignment at P-wetherbeei_contig5887:936..3313- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCCAAAGCAGAGAGATGCGCAAGACGAGAGGCGCGAGCGTGACCTC
AGTAGGCTATGTATCTTTGAGCTTCGTGTTTTTCTATGCTTTGGCTTTTT
ATCTTCAGCTTCCTCCAGCTACATCATTGTGGAGCACGGCGTGTTTGACC
CATGTCGCGTGCGAAGCGTTGCGCCTCGAAGCAAAACACTTGATTCTGCG
CATTCGGCCGGCACCATCGCAAGACATCGTGGAAGTATTCGGGAACCAAG
CGGTTTCCCTGGCGGTTTCGCTATACGTCAGCACTTGTCTACTCTTCGGC
GGGAGTTACGCGTTTTCTCAGGCCGCCACTCCTGCCTCGGTCGTCGCAAC
CACCGCGGTAGCTGCAGCCGCCGGCACGGCCGGCACCGCAAGCGCTGCGG
GCGGCGCTGGCAATGTCAAAAGTGCTGCCGCCGTGTCCGCGGCCCTCATG
CCACCGCCCCTGTTCCTGACGCCGGCGGCGGCGGCGGCGACCAACGTGCC
GCTCTTCCAGCACCTGGGCGCGCTGCTCCTGGCGTACATTCTGCTGGACA
CGGCGCATCTGGTGCGGGCGTGGCGGCTGGCGCCCAATGCGCCGATGCTG
CTGCACCATGCACTCTTTGGGGCGGTGCTGGCGATCGGCGTGGCGCTGGA
GCAGCGTCCGGAACAGTTCCGGATGCATGCCGTGCTGTTCGGCGCGGAGC
TGTCGACGCCGCTGCTCAACTTGCGGTGGATTCTCACCAAGGGCCTCGGC
TACCGGCCCCGTGCCCTCCTCGCGACGCTCTCCCTCGGCTTCGCCGCCAT
CTTCTTCGCCACGCGCATCGTCGGTTACGGGCTGCTACTCTTGGAGATGC
ACGCCGACCCGCGCAGCGACGTGCACCTATGGCGGCTGGCGATGCCGCCT
CCCGTCGCCGCCTCCTTTGCAACGCTTCTCTGGGTGGCGTTCGCGCTCAA
CGTCTACTGGGCGTGGCTGATCGTGGCGGCGTTCTTCAAGCCGCGTGGGC
GGCCGCCGCCACGGCCGGCTCCGACGAGAGATGATTCGGAGCCGGCGACG
GCAACGACTGAGCCTTTGGGGAAGCAGGAGCCCGGTGCATGGAACGGCAG
CGGCAGCAGCGGCGGCGGGCACGGCGGTGAAGGTGTTAGAGGCATGCCGA
CTGAAAACGAGGAAAGTGCCGAACTGGTTGTGGACGGCGGTGGCGGTGAC
TGCTGCGAAAGGAGTTGA
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