mRNA_P-wetherbeei_contig5883.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5883.1.2
Unique NamemRNA_P-wetherbeei_contig5883.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5883.1.2 vs. uniprot
Match: D7FLA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLA3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.540e-34
Identity = 70/210 (33.33%), Postives = 119/210 (56.67%), Query Frame = 2 
Query:   41 IGIALAFLYPRAPTWQVPAKLADYSLSLSHSKHRPLIPFCSMRRRLTLQIVSMQYESISMNY-DLTANVQIRMDLEIYNPNFVPAHVNNITLVMLHEDVYGRDVAFGVIRVQGEFNLRM--RSSRVVDSCMALDAVPPTVALQLGREIAAKNGTVLTKARSYMDVTIFRQKLMLEAECVQELQADVFPVRIKRIECSYFYNDALIPVLPP 661
            + + +  ++PRAPTWQ                                 IV M+Y  +SMN   +  +++I M LE++NPN+VPA +  I + M HED+ G +  FGV+   GE   R+  R S VV + M + ++P ++A+ + +++A   G ++++A ++MDV +    +++EA+CVQ +QADVFP++I  I+C Y+Y +  +PVLPP
Sbjct:   13 VSVCVGVMFPRAPTWQ---------------------------------IVDMKYRGLSMNIASIGVDMKIDMGLEVFNPNYVPATLKGIVMTMFHEDLGGEEAPFGVVTFAGENAARLPARGSAVVQAQMEVVSLPTSMAMGIAKDVA-DGGVIVSRASAFMDVKVMGGDILIEADCVQHMQADVFPIKINEIDCKYYYKNVRVPVLPP 188
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BLAST of mRNA_P-wetherbeei_contig5883.1.2 vs. uniprot
Match: A0A836CLA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA5_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.710e-32
Identity = 73/208 (35.10%), Postives = 108/208 (51.92%), Query Frame = 2 
Query:   41 IGIALAFLYPRAPTWQVPAKLADYSLSLSHSKHRPLIPFCSMRRRLTLQIVSMQYESISMNYDLTANVQIRMDLEIYNPNFVPAHVNNITLVMLHEDVYGRDVAFGVIRVQGEFNLRMRSSRVVDSCMALDAVPPTVALQLGREIAAKNGTVLTKARSYMDVTIF--RQKLMLEAECVQELQADVFPVRIKRIECSYFYNDALIPVLP 658
            + + +A  +PRAPTWQ+  +                                 +Y S+S NYD T   ++ ++LE+YN N + AHVN I L +LH D +G +  F  I V G+F L  R S      M +DA+ P +A  L R+ AA  GT++T+A S MDV++     +  LEAECVQ L+AD FP+ +  I+C Y+     +P+LP
Sbjct:   12 VAVLIANFFPRAPTWQIRGQ---------------------------------KYTSVSFNYDFTMAAEMELELELYNDNLLSAHVNAIELEVLHRDAWGVERPFARIHVAGDFALPARGSVRRAGTMVMDALAPAMAGALARDAAANGGTLVTRAHSTMDVSVLGGAARARLEAECVQHLRADAFPMEVTYIDCRYYMGRHRVPMLP 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5883.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLA3_ECTSI3.540e-3433.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLA5_9STRA8.710e-3235.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5883contigP-wetherbeei_contig5883:222..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1820
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004890.1
Cds size654
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5883.1.2prot_P-wetherbeei_contig5883.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5883 232..1773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.205258-UTR-P-wetherbeei_contig5883:221..2311683186870.205258-UTR-P-wetherbeei_contig5883:221..231Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5883 222..231 +
1683186870.2601914-UTR-P-wetherbeei_contig5883:1773..29291683186870.2601914-UTR-P-wetherbeei_contig5883:1773..2929Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5883 1774..2929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.2151206-CDS-P-wetherbeei_contig5883:231..4921683186870.2151206-CDS-P-wetherbeei_contig5883:231..492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5883 232..492 +
1683186870.2245886-CDS-P-wetherbeei_contig5883:621..7161683186870.2245886-CDS-P-wetherbeei_contig5883:621..716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5883 622..716 +
1683186870.237372-CDS-P-wetherbeei_contig5883:1161..13241683186870.237372-CDS-P-wetherbeei_contig5883:1161..1324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5883 1162..1324 +
1683186870.2470992-CDS-P-wetherbeei_contig5883:1638..17731683186870.2470992-CDS-P-wetherbeei_contig5883:1638..1773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5883 1639..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5883.1.2

>prot_P-wetherbeei_contig5883.1.2 ID=prot_P-wetherbeei_contig5883.1.2|Name=mRNA_P-wetherbeei_contig5883.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
MVLQVAAVGLIGIALAFLYPRAPTWQVPAKLADYSLSLSHSKHRPLIPFC
SMRRRLTLQIVSMQYESISMNYDLTANVQIRMDLEIYNPNFVPAHVNNIT
LVMLHEDVYGRDVAFGVIRVQGEFNLRMRSSRVVDSCMALDAVPPTVALQ
LGREIAAKNGTVLTKARSYMDVTIFRQKLMLEAECVQELQADVFPVRIKR
IECSYFYNDALIPVLPP*
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mRNA from alignment at P-wetherbeei_contig5883:222..2929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5883.1.2 ID=mRNA_P-wetherbeei_contig5883.1.2|Name=mRNA_P-wetherbeei_contig5883.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2708bp|location=Sequence derived from alignment at P-wetherbeei_contig5883:222..2929+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACAAAGATGGTGCTCCAAGTGGCAGCAGTGGGGCTGATTGGAATCG
CATTGGCGTTCCTTTACCCACGGGCACCAACATGGCAGGTGCCCGCAAAA
CTGGCTGACTATTCGCTTTCTCTTTCGCACTCGAAACATCGACCCCTCAT
TCCCTTTTGTTCTATGCGACGTCGCCTCACTTTGCAGATCGTAAGCATGC
AGTACGAGAGCATATCGATGAACTACGATCTGACAGCCAACGTGCAAATT
AGAATGGACCTCGAGATTTACGTAAGTGTGTAAACGGAAGAAGACAAGAA
AGAGCCTCCTATACGGCCTAACATATTTTCGCGTTTCTCAGTTTAGTAAC
GTATTCTTTCGCGATTCTTGCTTCCGTCCGCCACCGCTCGTCCCGCTCAG
AACCCCAACTTTGTGCCTGCCCATGTCAACAACATAACTTTGGTCATGCT
GCATGAGGACGTCTACGGCCGCGACGTCGCCTTTGGCGTCATCAGGTGAA
AATCATGTGCCGGAGGGACCCTGCAGAAGGAACTTTTGGCGTTTCCCGTG
TTTATAACGAGTGTAAGTTTGGATTTCCCGCACAAGTTTGGAAAGGCTTG
GTTGGCACTCCTGACACCACAAAATTGGACAGGTGGTTGCTTTCGCAGCA
GTGCATTACTTCTTGGAACGCTCGATTTCCCTTCAGAGTGTAAGCCACCC
AGTCAAATGTCTGAAAGGAAGAAGCACAGCCCAAGAACCGTTAGCGGATT
CATGTTATATTTCAAATGCAAGAGTTATGTGAAAGACCTTTTGCTCGTTA
ATCAAATAAAAAGTAAGTACCGCTTTCTCTCGCTCTGCTATACCAATGAC
GACCGCGGCATGCCCGCGTCTCCCCCGTTTCCGGAATGAACAAACCAACC
TTGCGTGCACGCAAAACGCGCCGACACACCTACACAACAGAGTGCAGGGG
GAGTTCAATCTGAGGATGCGCAGCAGCCGCGTGGTGGACTCATGCATGGC
GCTCGACGCCGTCCCGCCGACCGTGGCGCTGCAGCTGGGGCGCGAGATAG
CTGCCAAAAATGGCACCGTCCTCACCAAGGCCCGCAGCTACATGGACGTA
ACGGTGAGTTGAGGAGAGAGGGGTGGGGCCGGCGGGGATTTTCCCGCTGT
GCGCGGCCGCCGCTGTCATTCCCACTGCCGCCGCTGTCGCTGTTGCACTT
AGTGGACGAAGGCCGCGTCGCTGCCGTCTTTCTTCTTCCTTCCTTCCAAT
ATGAGTCCCTTCTTATCCATTGCCTTTGCCGCTGTCCTGCTTCTCAATTC
TTCCTCCCGTATCCTCTTCCTGCATTTTCCGCCTTCTGCCTGGTCCGCTG
ACTGGTCGGCCGTCCTACGGGCACTGCGGGGTGGCGGCAAAACTGGTGGC
GGCAAAACTGGGAGCAGATATTTCGGCAGAAGCTGATGCTGGAGGCGGAG
TGTGTGCAGGAGTTGCAGGCGGACGTCTTCCCCGTGCGCATCAAACGCAT
CGAGTGCAGCTACTTCTACAACGATGCCCTCATCCCCGTCCTCCCGCCAT
GACACGGCTCCTCGTTCTCCTTCGTGTTCTTCTTCGATCGCGTCACCATT
GGCCCGTTGCGATCCAAGCGCCGGCCGGACCGACAGGACGATGACGTCGA
TGGACCCGCGCGTAACCGATACACGGCAGAGCCGACAAACCCAGAGATAG
CTAGAGAGAACCGTCGGGACGGCGGACAGGTCGACTGACGGACCGGGCGG
AGCTGCAGAGGAGCTGACGGAGGCCGGTGAAAGGATACTCTTGACGGGGA
CTGTCATCCTTCCGAGTGATTCTGGAGTTTCGGTGGCCCCGCAGTCAACG
CTTCCACAGGCGGCTTTCGTCCGCGGTTTCCGACCAACGGGCTTCGCGGA
TGCGCCGAAATGCCATCCGGTGCCGTGCCGCTCGGCTGCCATGCGCGCGC
CTGATCGGACACGACGGGGGCGAAATTCTCCTCGGCCGCATCTAGTCGGG
CGGATGCAACTGCAAGAAGAAGGCATATATGGCATTCATGCTGGCACTCT
GGCATGAATCAATCACGACCAACGTCTGCAGCCGCCGCCGCCGCCTGCCG
CCGCCGATGCCGCAGGCGGCGGCCAGTTTGAATCGTCAGGTGTGGCAGCA
GCGACTTGAACGGTGGAATCACGGACAGGAAAATGCGCATGGCTTTTAAT
CTGGCTGCAAAGCTAGTAGAGAACCCATTCGGGAAGCGGACAACTATCCG
GGTCCCCGTGGCGTGGTGCTGCGTGGCCTTTGCAGAACGAAGAAAATGCG
CGTAGCTTTACAAAAGAAGATAGGAGAACAAAATGGCGCCGTAGATCACT
ACAGAGATGCTAGAAACACAACCATATTCAAGGGACCGCCTCGTCTTGTA
AACATTCTGTTGAAGCGGTGGGTCAGCAGCTGAAATGGCTTGCTTCCGCC
CGCCGATGGCAGCGGCCGCAGCGAGCGGCGGCGGCGGTCATGACGGTGGC
AGTTAATGGCGGCGTCGACGTCGTTAGCCACTCGCCTTGCTGTAACGCAA
CTTGTGCCTGGAATTTATCGGTGTAGTGAGCGAGAGGTTTCATTCAACAT
CGTGAGCATGACGGGACGCGGAACCTCTACCTGAGCCGGCGCCTAGCAGA
GTCGGCGATGCTCTCTCTGCAGCGGCCTAAGGAAAGGATGCCGATGGCAC
AGTAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5883:222..2929+

>mRNA_P-wetherbeei_contig5883.1.2 ID=mRNA_P-wetherbeei_contig5883.1.2|Name=mRNA_P-wetherbeei_contig5883.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig5883:222..2929+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTCCAAGTGGCAGCAGTGGGGCTGATTGGAATCGCATTGGCGTT
CCTTTACCCACGGGCACCAACATGGCAGGTGCCCGCAAAACTGGCTGACT
ATTCGCTTTCTCTTTCGCACTCGAAACATCGACCCCTCATTCCCTTTTGT
TCTATGCGACGTCGCCTCACTTTGCAGATCGTAAGCATGCAGTACGAGAG
CATATCGATGAACTACGATCTGACAGCCAACGTGCAAATTAGAATGGACC
TCGAGATTTACAACCCCAACTTTGTGCCTGCCCATGTCAACAACATAACT
TTGGTCATGCTGCATGAGGACGTCTACGGCCGCGACGTCGCCTTTGGCGT
CATCAGAGTGCAGGGGGAGTTCAATCTGAGGATGCGCAGCAGCCGCGTGG
TGGACTCATGCATGGCGCTCGACGCCGTCCCGCCGACCGTGGCGCTGCAG
CTGGGGCGCGAGATAGCTGCCAAAAATGGCACCGTCCTCACCAAGGCCCG
CAGCTACATGGACGTAACGATATTTCGGCAGAAGCTGATGCTGGAGGCGG
AGTGTGTGCAGGAGTTGCAGGCGGACGTCTTCCCCGTGCGCATCAAACGC
ATCGAGTGCAGCTACTTCTACAACGATGCCCTCATCCCCGTCCTCCCGCC
ATGA
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