mRNA_P-wetherbeei_contig58816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58816.1.1
Unique NamemRNA_P-wetherbeei_contig58816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58816.1.1 vs. uniprot
Match: UPI001C3CFD31 (DEAD/DEAH box helicase family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CFD31)

HSP 1 Score: 148 bits (374), Expect = 7.660e-40
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:    1 WVQAAGFDVTVDELIDRVTVGLDPLAAVPWWALSGLVARRLQDGVDQPLWRAWATALLVQPDLRQALPDDVPRRVLDRL 237
            WVQAA  DVTVDELI+RVT G+DPLAAVPWWALSGLVARRL DG DQPLWRAWATALLVQP+LR+ALPDDVPRRVLDRL
Sbjct:  457 WVQAASADVTVDELIERVTTGVDPLAAVPWWALSGLVARRLYDGADQPLWRAWATALLVQPELRRALPDDVPRRVLDRL 535
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BLAST of mRNA_P-wetherbeei_contig58816.1.1 vs. uniprot
Match: UPI001C3D1775 (DEAD/DEAH box helicase family protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D1775)

HSP 1 Score: 146 bits (368), Expect = 5.040e-39
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:    1 WVQAAGFDVTVDELIDRVTVGLDPLAAVPWWALSGLVARRLQDGVDQPLWRAWATALLVQPDLRQALPDDVPRRVLDRL 237
            WV+AA  DV+VDELI+RVT+G+DPLAAVPWWALSG++ARRL DG DQPLWRAWATALLVQPDLR+ALPDDVPRRVLDRL
Sbjct:  457 WVEAASNDVSVDELIERVTLGVDPLAAVPWWALSGVIARRLHDGADQPLWRAWATALLVQPDLRRALPDDVPRRVLDRL 535
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C3CFD317.660e-4088.61DEAD/DEAH box helicase family protein n=1 Tax=Milt... [more]
UPI001C3D17755.040e-3984.81DEAD/DEAH box helicase family protein n=1 Tax=Milt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58816contigP-wetherbeei_contig58816:266..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1071085.KK033114_gene1457
PFAMsTrmB
Model size237
Max annot lvl183963|Halobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.34e-05
EggNOG OGsCOG1378@1|root,arCOG02037@2157|Archaea,2XT5T@28890|Euryarchaeota,23SZB@183963|Halobacteria
Descriptiontranscriptional
Cds size237
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186870.1137435-CDS-P-wetherbeei_contig58816:265..5021683186870.1137435-CDS-P-wetherbeei_contig58816:265..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58816 266..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58816.1.1prot_P-wetherbeei_contig58816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58816 266..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58816.1.1

>prot_P-wetherbeei_contig58816.1.1 ID=prot_P-wetherbeei_contig58816.1.1|Name=mRNA_P-wetherbeei_contig58816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
WVQAAGFDVTVDELIDRVTVGLDPLAAVPWWALSGLVARRLQDGVDQPLW
RAWATALLVQPDLRQALPDDVPRRVLDRL
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mRNA from alignment at P-wetherbeei_contig58816:266..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58816.1.1 ID=mRNA_P-wetherbeei_contig58816.1.1|Name=mRNA_P-wetherbeei_contig58816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig58816:266..502- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGCAGGCGGCGGGGTTCGATGTGACGGTGGACGAGCTCATCGACCG
CGTCACCGTCGGCCTCGATCCCCTGGCCGCCGTTCCCTGGTGGGCGCTCA
GCGGTCTGGTGGCCCGGCGCCTTCAGGACGGGGTCGATCAGCCGCTCTGG
CGCGCCTGGGCCACGGCCCTCCTGGTTCAGCCGGACCTGCGCCAGGCGCT
GCCCGACGATGTGCCGCGGCGGGTGCTCGATCGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58816:266..502-

>mRNA_P-wetherbeei_contig58816.1.1 ID=mRNA_P-wetherbeei_contig58816.1.1|Name=mRNA_P-wetherbeei_contig58816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig58816:266..502- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGCAGGCGGCGGGGTTCGATGTGACGGTGGACGAGCTCATCGACCG
CGTCACCGTCGGCCTCGATCCCCTGGCCGCCGTTCCCTGGTGGGCGCTCA
GCGGTCTGGTGGCCCGGCGCCTTCAGGACGGGGTCGATCAGCCGCTCTGG
CGCGCCTGGGCCACGGCCCTCCTGGTTCAGCCGGACCTGCGCCAGGCGCT
GCCCGACGATGTGCCGCGGCGGGTGCTCGATCGCCTG
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