mRNA_P-wetherbeei_contig5878.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5878.1.1
Unique NamemRNA_P-wetherbeei_contig5878.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5878.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5878contigP-wetherbeei_contig5878:1607..3290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size874
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000670.1
Cds size873
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.6310785-CDS-P-wetherbeei_contig5878:1606..17871683186869.6310785-CDS-P-wetherbeei_contig5878:1606..1787Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5878 1607..1787 -
1683186869.6415591-CDS-P-wetherbeei_contig5878:2100..24421683186869.6415591-CDS-P-wetherbeei_contig5878:2100..2442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5878 2101..2442 -
1683186869.6515973-CDS-P-wetherbeei_contig5878:2699..27821683186869.6515973-CDS-P-wetherbeei_contig5878:2699..2782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5878 2700..2782 -
1683186869.6615386-CDS-P-wetherbeei_contig5878:2901..30121683186869.6615386-CDS-P-wetherbeei_contig5878:2901..3012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5878 2902..3012 -
1683186869.6712437-CDS-P-wetherbeei_contig5878:3134..32901683186869.6712437-CDS-P-wetherbeei_contig5878:3134..3290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5878 3135..3290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5878.1.1prot_P-wetherbeei_contig5878.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5878 1607..3290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5878.1.1

>prot_P-wetherbeei_contig5878.1.1 ID=prot_P-wetherbeei_contig5878.1.1|Name=mRNA_P-wetherbeei_contig5878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=291bp
MGPLLRLKIDWRPTRSRGMEVLPFAAVASAASTLPSQPSLPLDQEDATHA
MLALKCSLRAEDAQREGRLDDCCEAHLCAAKHYMHAARSVGGAAAAALML
ISNAHARKAQEAQFHERWLHPATGDFSGSGNDGSCRRARGSNRRSHSVSL
GAGRGGSGCNSGAQVPLVSVKGGGGTGAGGGGAGSGECAAGMADSILFPA
AAAAEAAAVAAVAPPPSARRSAEDEEAAALRQRVQDMLELEHLLGRLGLA
AARGSAAAGTVAAGRGAALNSSIGGGGQSQLLLRGAGGGGG
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mRNA from alignment at P-wetherbeei_contig5878:1607..3290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5878.1.1 ID=mRNA_P-wetherbeei_contig5878.1.1|Name=mRNA_P-wetherbeei_contig5878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1684bp|location=Sequence derived from alignment at P-wetherbeei_contig5878:1607..3290- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCCGTTGCTGAGATTAAAAATCGACTGGCGACCGACGCGCTCGCG
AGGCATGGAAGTGCTTCCATTCGCGGCAGTAGCGAGCGCAGCATCCACAC
TTCCGTCTCAACCGTCTCTGCCTCTGGACCAAGAGGATGCGACGCACGCA
ATGCTGGTGAGGATTTGTGCTCCCTTTCCCTCTCCTCTTTCCCAGCTTCT
TCCATTTGTAAACCTTTCTGTTGCCACTCATATATGATACATGTGTGTTA
ATCATTCCTAAATTCTCTCGAGCTCCAGGCGCTCAAGTGCTCGCTGCGAG
CCGAGGACGCACAGCGCGAGGGGCGGTTGGACGACTGTTGCGAGGCACAT
CTATGCGCAGCCAAACATTACATGCACGCTGCGCGTTCGGTACGTTTCTA
TGCTGGCAATTATTAGCTCCGCGCTGTCTTTATTCGTTTGGCTCAGTTCG
TTGCTTGGACAGACAACGAACGAGCGACCCCGTCTCCCCCCTGTCGTCCC
CTTCGCAGGTTGGGGGCGCCGCGGCGGCTGCGCTGATGCTGATCTCGAAC
GCCCATGCCCGGAAGGCACAGGAGGCGCAATTCCACGAAAGGTTGCTAAC
CCCATTTCTCTTTTATTTCCGGGAAAAGTAATTCTTGCTATTCCTCTGGC
ATGTAGAAATCATTTAATCAATGCCTTGGTCGAGTGGACGAGGGCCTTTA
TTCTCATTCGTTTGCTTCTCATTGCTGGTTTGGACCAGGTTCGAGGCATC
TCTCAGGCATTCACTAACTGCGGAGGCTTGCCGTGATTGTTATGACCGTC
TTCTTTGTAATTGCAACTCCTATCCTTGCGACGAGATTTACGCAACAGGT
GGCTCCATCCTGCTACTGGTGACTTCAGCGGCAGCGGTAACGACGGGAGC
TGCCGACGCGCCCGGGGAAGTAATCGGCGAAGCCACAGCGTCTCCCTCGG
CGCAGGACGCGGCGGCAGCGGCTGTAACAGCGGCGCTCAGGTCCCGCTGG
TTTCCGTCAAAGGCGGCGGTGGCACTGGCGCTGGCGGTGGTGGAGCTGGC
AGCGGCGAGTGCGCGGCGGGCATGGCGGACAGCATCCTCTTCCCGGCGGC
AGCGGCGGCTGAGGCAGCGGCGGTGGCGGCCGTCGCGCCGCCACCATCCG
CGCGACGTTCGGCCGAGGACGAGGAGGCTGCAGCGCTGAGGTGAGGCGGC
GTGTCGGAAGTGAAGGGCCACGAGTCGGGATATCGTTTACGAGAGAGGAC
GAGGGGCTTGAAGGTTCGCCAGGTTTTTAGACGTAGCTTGGGTTTGATGT
CCATATACCATATTTCGGTGATGAAAGAAGTGTGCACTGTCTTATCTGGA
GTATTCTTTCATTGAGGAGCGGAAGACCGCGAATCAATTTTCCTTTTTCC
CCTTCCACCAAAGACCAAACTTGAAGTCGAATGTTGGTGGCTCTTATTTC
AAAGATTGTGTTCTCCCCATGACTTAGTTATATTCCCCTCCTCTTTGTAG
CAGGCAACGCGTGCAAGACATGCTGGAGCTGGAGCATCTGCTGGGGCGGC
TCGGCCTCGCGGCAGCCCGCGGCAGCGCCGCGGCGGGGACGGTGGCGGCG
GGGCGTGGGGCGGCTCTCAACAGCAGCATTGGTGGCGGGGGGCAGTCTCA
GCTGCTGCTGCGTGGCGCCGGCGGCGGCGGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5878:1607..3290-

>mRNA_P-wetherbeei_contig5878.1.1 ID=mRNA_P-wetherbeei_contig5878.1.1|Name=mRNA_P-wetherbeei_contig5878.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig5878:1607..3290- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTCCGTTGCTGAGATTAAAAATCGACTGGCGACCGACGCGCTCGCG
AGGCATGGAAGTGCTTCCATTCGCGGCAGTAGCGAGCGCAGCATCCACAC
TTCCGTCTCAACCGTCTCTGCCTCTGGACCAAGAGGATGCGACGCACGCA
ATGCTGGCGCTCAAGTGCTCGCTGCGAGCCGAGGACGCACAGCGCGAGGG
GCGGTTGGACGACTGTTGCGAGGCACATCTATGCGCAGCCAAACATTACA
TGCACGCTGCGCGTTCGGTTGGGGGCGCCGCGGCGGCTGCGCTGATGCTG
ATCTCGAACGCCCATGCCCGGAAGGCACAGGAGGCGCAATTCCACGAAAG
GTGGCTCCATCCTGCTACTGGTGACTTCAGCGGCAGCGGTAACGACGGGA
GCTGCCGACGCGCCCGGGGAAGTAATCGGCGAAGCCACAGCGTCTCCCTC
GGCGCAGGACGCGGCGGCAGCGGCTGTAACAGCGGCGCTCAGGTCCCGCT
GGTTTCCGTCAAAGGCGGCGGTGGCACTGGCGCTGGCGGTGGTGGAGCTG
GCAGCGGCGAGTGCGCGGCGGGCATGGCGGACAGCATCCTCTTCCCGGCG
GCAGCGGCGGCTGAGGCAGCGGCGGTGGCGGCCGTCGCGCCGCCACCATC
CGCGCGACGTTCGGCCGAGGACGAGGAGGCTGCAGCGCTGAGGCAACGCG
TGCAAGACATGCTGGAGCTGGAGCATCTGCTGGGGCGGCTCGGCCTCGCG
GCAGCCCGCGGCAGCGCCGCGGCGGGGACGGTGGCGGCGGGGCGTGGGGC
GGCTCTCAACAGCAGCATTGGTGGCGGGGGGCAGTCTCAGCTGCTGCTGC
GTGGCGCCGGCGGCGGCGGCGGT
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