mRNA_P-wetherbeei_contig58772.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58772.3.1
Unique NamemRNA_P-wetherbeei_contig58772.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58772.3.1 vs. uniprot
Match: UPI001FF72679 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 157 TaxID=2782631 RepID=UPI001FF72679)

HSP 1 Score: 92.8 bits (229), Expect = 1.180e-23
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 MRAPRIRELEGMAAKLSATARKLPPGPDRQDAFREISNFRDKIAALKIAEQSARGPKAR 177
            M APRIRELE MAAKLSATARKLPPG +RQDAFREIS FRDKI ALKIAE+SA+ PK +
Sbjct:    1 MSAPRIRELENMAAKLSATARKLPPGQERQDAFREISKFRDKITALKIAERSAQEPKTQ 59
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BLAST of mRNA_P-wetherbeei_contig58772.3.1 vs. uniprot
Match: UPI001BA54060 (hypothetical protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA54060)

HSP 1 Score: 51.6 bits (122), Expect = 2.070e-7
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 MRAPRIRELEGMAAKLSATARKLPPGPDRQDAFREISNFRDKIAALKIA 147
            M A  +R+LE MAAKL ATARKLP G  R +   +I+ FR +IAAL++A
Sbjct:    1 MSATGLRDLEEMAAKLEATARKLPTGRRRDELLEDIARFRAQIAALQVA 49
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BLAST of mRNA_P-wetherbeei_contig58772.3.1 vs. uniprot
Match: UPI001BA6ECD3 (hypothetical protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0222 TaxID=2807668 RepID=UPI001BA6ECD3)

HSP 1 Score: 51.2 bits (121), Expect = 2.940e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 IRELEGMAAKLSATARKLPPGPDRQDAFREISNFRDKIAALKIA 147
            +R+LE MAAKL ATARKLP GP R +   +I+ FR +IA L+ A
Sbjct:    6 LRDLEEMAAKLEATARKLPTGPRRDELLEDIARFRAQIATLQAA 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58772.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001FF726791.180e-2381.36hypothetical protein n=1 Tax=Bradyrhizobium sp. 15... [more]
UPI001BA540602.070e-755.10hypothetical protein n=1 Tax=unclassified Bradyrhi... [more]
UPI001BA6ECD32.940e-756.82hypothetical protein n=1 Tax=Bradyrhizobium sp. AU... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58772contigP-wetherbeei_contig58772:304..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size186
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.6044724-CDS-P-wetherbeei_contig58772:303..4891683186869.6044724-CDS-P-wetherbeei_contig58772:303..489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58772 304..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58772.3.1prot_P-wetherbeei_contig58772.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58772 304..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58772.3.1

>prot_P-wetherbeei_contig58772.3.1 ID=prot_P-wetherbeei_contig58772.3.1|Name=mRNA_P-wetherbeei_contig58772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MRAPRIRELEGMAAKLSATARKLPPGPDRQDAFREISNFRDKIAALKIAE
QSARGPKARDD*
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mRNA from alignment at P-wetherbeei_contig58772:304..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58772.3.1 ID=mRNA_P-wetherbeei_contig58772.3.1|Name=mRNA_P-wetherbeei_contig58772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig58772:304..489+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCGCCGAGGATCCGCGAACTTGAAGGCATGGCGGCAAAGCTGTC
AGCCACCGCACGCAAGCTCCCGCCGGGACCGGACCGTCAAGACGCGTTTC
GGGAGATCAGCAACTTTCGTGATAAGATAGCCGCTCTAAAAATTGCAGAA
CAGTCAGCACGAGGGCCCAAGGCCCGAGACGACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58772:304..489+

>mRNA_P-wetherbeei_contig58772.3.1 ID=mRNA_P-wetherbeei_contig58772.3.1|Name=mRNA_P-wetherbeei_contig58772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig58772:304..489+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCGCCGAGGATCCGCGAACTTGAAGGCATGGCGGCAAAGCTGTC
AGCCACCGCACGCAAGCTCCCGCCGGGACCGGACCGTCAAGACGCGTTTC
GGGAGATCAGCAACTTTCGTGATAAGATAGCCGCTCTAAAAATTGCAGAA
CAGTCAGCACGAGGGCCCAAGGCCCGAGACGACTAA
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