mRNA_P-wetherbeei_contig58763.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58763.2.1
Unique NamemRNA_P-wetherbeei_contig58763.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: A0A5C7NWP4_9PROT (ETC complex I subunit n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NWP4_9PROT)

HSP 1 Score: 145 bits (365), Expect = 3.570e-43
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            MQVRI++PA+ AMQSG+ +T++W+L+F     R ADPLMGWT + +T++QV LKFD+KEEAIAYAE+ G AY VEEP+   LQ +AYADNFKFDRIG+WTH
Sbjct:    1 MQVRIYQPAKTAMQSGRAQTRQWILEFPPSAPRFADPLMGWTGSTDTQRQVKLKFDTKEEAIAYAEKHGLAYLVEEPQHRALQPKAYADNFKFDRIGRWTH 101
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: UPI00093165C2 (ETC complex I subunit n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00093165C2)

HSP 1 Score: 142 bits (358), Expect = 4.160e-42
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RI+KPA+ AMQSG  +TKEWVL+ +A V R+ DPLMGWTS+A+TR QV L+F SKEEAIAYAEREG  Y ++EPKP +L  ++Y+DNFKF R+G WTH
Sbjct:    1 MTARIYKPAKTAMQSGTARTKEWVLEHEAAVPRQIDPLMGWTSSADTRTQVRLEFASKEEAIAYAEREGIPYRLDEPKPRKLVRKSYSDNFKFGRLGAWTH 101
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: UPI00036539F0 (ETC complex I subunit n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00036539F0)

HSP 1 Score: 141 bits (356), Expect = 8.390e-42
Identity = 66/101 (65.35%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RIFKPA+ AMQSG  +TKEWVL+ ++ V R+ DPLMGWT +A+TR QV L+FD+KEEAIAYAER G  Y ++EPKP  L  +AYADNFKF RIG WTH
Sbjct:    1 MSARIFKPAKTAMQSGFARTKEWVLEHESNVPRQIDPLMGWTGSADTRTQVRLEFDTKEEAIAYAERNGIPYRLDEPKPRALIRKAYADNFKFGRIGAWTH 101
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: UPI0019945116 (Oxidoreductase n=2 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI0019945116)

HSP 1 Score: 139 bits (349), Expect = 1.140e-40
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RIF+PAR AMQSG  KTK W L FD    R  +PLMGWTS+A+TRQQ+ L F++KEEAIAYAER G AY VEEPK    +  AY+DNFKF+RIG+WTH
Sbjct:    6 MTARIFRPARTAMQSGTAKTKRWTLDFDPSAPRRVEPLMGWTSSADTRQQLRLSFETKEEAIAYAERNGIAYRVEEPKEVHHRQMAYSDNFKFNRIGQWTH 106
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: A0A839SUY7_9HYPH (Uncharacterized protein n=1 Tax=Limibacillus halophilus TaxID=1579333 RepID=A0A839SUY7_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 5.660e-40
Identity = 58/101 (57.43%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            MQVRIFKPA+ AMQSG+ +T  W ++F+   +RE +PLMGWTS+AET+ QV L FDSKEEA+AYAE++G  Y++ EP   +++ +AYADNF + R+G+WTH
Sbjct:    1 MQVRIFKPAKTAMQSGRARTDRWCMEFEPGARREIEPLMGWTSSAETKHQVCLWFDSKEEAVAYAEKQGLMYSISEPTARKIKPKAYADNFSYSRLGRWTH 101
[Close]
BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: A0A2D7FDH1_9HYPH (ETC complex I subunit n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FDH1_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 5.660e-40
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RI++PA+ AMQSGKG+TK WVL+ +    RE DPLMGWTS+++ RQQ+ L+FDSKE+A+AYAER G  Y VEEPK   +  ++YADNFK+ RIG WTH
Sbjct:    1 MTARIYQPAKTAMQSGKGRTKGWVLEHEPAAAREIDPLMGWTSSSDMRQQIKLRFDSKEDAVAYAERNGLPYVVEEPKKRLVIKKSYADNFKYGRIGSWTH 101
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: A0A7Y0HFQ2_9PROT (ETC complex I subunit n=2 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HFQ2_9PROT)

HSP 1 Score: 136 bits (343), Expect = 8.030e-40
Identity = 58/101 (57.43%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M+VRIFKPA+ AMQSG+GKTK+W+++F+       DPLMGW  +A+TR+QV L F+++EEA+AYA+++GY+YTVE+PK  R++ +AYADNF +DR   WTH
Sbjct:    1 MEVRIFKPAKTAMQSGRGKTKDWIVEFEPTDASRPDPLMGWVGSADTRKQVRLSFETEEEAVAYAKKQGYSYTVEKPKSRRIKPKAYADNFAYDRRRPWTH 101
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BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: A0A6I3KQE4_9HYPH (ETC complex I subunit n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KQE4_9HYPH)

HSP 1 Score: 135 bits (341), Expect = 1.620e-39
Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RIFKPAR AMQSG+G+TKEWVL+F     RE +PLMGWT+  +   +V L FDSKEEAIAYAEREG AY + EP P ++  ++YADNFK+ RIG+WTH
Sbjct:    1 MVARIFKPARTAMQSGEGRTKEWVLEFAPASPREIEPLMGWTATRDMSAEVQLAFDSKEEAIAYAEREGIAYQLLEPSPRKMIRKSYADNFKYGRIGRWTH 101
[Close]
BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: UPI0018732369 (ETC complex I subunit n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018732369)

HSP 1 Score: 135 bits (339), Expect = 3.270e-39
Identity = 57/101 (56.44%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            MQVRIF+P + AMQSG+  TK+W ++F+    RE +PLMGWTS+A+TR Q+ L+FD+ EEAIAYA++EG  Y VE P   +++ +AYADNF++DR+G+WTH
Sbjct:    1 MQVRIFQPPKTAMQSGRATTKQWTMEFEPQAAREVEPLMGWTSSADTRAQLRLRFDTLEEAIAYAQKEGLMYNVERPHERKVKPKAYADNFRYDRLGRWTH 101
[Close]
BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Match: UPI0015E67CA2 (ETC complex I subunit n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI0015E67CA2)

HSP 1 Score: 135 bits (339), Expect = 3.270e-39
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    4 MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQVTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWTH 306
            M  RI+KPAR AMQSG+ +TK+WVL+F+    R ADPLMGWTSA ET+ QV L+FD+KEEAIAYA REG A+T+ EPKP +   ++YADNF++ R   WTH
Sbjct:    1 MTARIYKPARTAMQSGEARTKDWVLEFEYTTPRRADPLMGWTSARETQPQVRLEFDTKEEAIAYATREGIAFTLTEPKPRKPIRKSYADNFRYGRTTNWTH 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58763.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NWP4_9PROT3.570e-4364.36ETC complex I subunit n=1 Tax=Rhodospirillaceae ba... [more]
UPI00093165C24.160e-4264.36ETC complex I subunit n=1 Tax=Hyphomicrobium sp. C... [more]
UPI00036539F08.390e-4265.35ETC complex I subunit n=1 Tax=Hyphomicrobium zavar... [more]
UPI00199451161.140e-4064.36Oxidoreductase n=2 Tax=Chelatococcus reniformis Ta... [more]
A0A839SUY7_9HYPH5.660e-4057.43Uncharacterized protein n=1 Tax=Limibacillus halop... [more]
A0A2D7FDH1_9HYPH5.660e-4060.40ETC complex I subunit n=2 Tax=Hyphomicrobiaceae Ta... [more]
A0A7Y0HFQ2_9PROT8.030e-4057.43ETC complex I subunit n=2 Tax=Pacificispira spongi... [more]
A0A6I3KQE4_9HYPH1.620e-3962.38ETC complex I subunit n=3 Tax=Hyphomicrobium TaxID... [more]
UPI00187323693.270e-3956.44ETC complex I subunit n=1 Tax=Pelagibius sp. NBU25... [more]
UPI0015E67CA23.270e-3961.39ETC complex I subunit n=1 Tax=Hyphomicrobium methy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58763contigP-wetherbeei_contig58763:99..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380391.JIAS01000011_gene5464
PFAMsETC_C1_NDUFA4
Model size309
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.55e-43
EggNOG OGs2C7TH@1|root,32RJS@2|Bacteria,1MZK8@1224|Proteobacteria,2UC2R@28211|Alphaproteobacteria,2JTUN@204441|Rhodospirillales
DescriptionETC complex I subunit conserved region
Cds size306
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.378855-CDS-P-wetherbeei_contig58763:98..4041683186869.378855-CDS-P-wetherbeei_contig58763:98..404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58763 99..404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.3900928-UTR-P-wetherbeei_contig58763:404..4071683186869.3900928-UTR-P-wetherbeei_contig58763:404..407Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58763 405..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58763.2.1prot_P-wetherbeei_contig58763.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58763 99..404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58763.2.1

>prot_P-wetherbeei_contig58763.2.1 ID=prot_P-wetherbeei_contig58763.2.1|Name=mRNA_P-wetherbeei_contig58763.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MQVRIFKPARNAMQSGKGKTKEWVLQFDAPVKREADPLMGWTSAAETRQQ
VTLKFDSKEEAIAYAEREGYAYTVEEPKPHRLQSRAYADNFKFDRIGKWT
H*
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mRNA from alignment at P-wetherbeei_contig58763:99..407-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58763.2.1 ID=mRNA_P-wetherbeei_contig58763.2.1|Name=mRNA_P-wetherbeei_contig58763.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig58763:99..407- (Phaeothamnion wetherbeei SAG_119_79)
CACATGCAGGTTCGCATCTTCAAGCCGGCGCGCAACGCCATGCAGTCCGG
CAAGGGCAAGACCAAGGAATGGGTGCTGCAATTCGATGCGCCCGTGAAGC
GCGAGGCCGACCCGCTGATGGGCTGGACCTCCGCCGCCGAGACGCGCCAG
CAGGTGACCCTGAAGTTCGACAGCAAGGAAGAAGCCATCGCCTATGCCGA
GCGCGAGGGCTATGCCTACACGGTCGAAGAGCCGAAGCCGCACCGCCTGC
AATCGCGCGCCTATGCCGACAATTTCAAGTTCGACCGCATCGGCAAATGG
ACGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58763:99..407-

>mRNA_P-wetherbeei_contig58763.2.1 ID=mRNA_P-wetherbeei_contig58763.2.1|Name=mRNA_P-wetherbeei_contig58763.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig58763:99..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGTTCGCATCTTCAAGCCGGCGCGCAACGCCATGCAGTCCGGCAA
GGGCAAGACCAAGGAATGGGTGCTGCAATTCGATGCGCCCGTGAAGCGCG
AGGCCGACCCGCTGATGGGCTGGACCTCCGCCGCCGAGACGCGCCAGCAG
GTGACCCTGAAGTTCGACAGCAAGGAAGAAGCCATCGCCTATGCCGAGCG
CGAGGGCTATGCCTACACGGTCGAAGAGCCGAAGCCGCACCGCCTGCAAT
CGCGCGCCTATGCCGACAATTTCAAGTTCGACCGCATCGGCAAATGGACG
CACTGA
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