mRNA_P-wetherbeei_contig5876.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig5876.1.1
Unique Name	mRNA_P-wetherbeei_contig5876.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: T0Q0L9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q0L9_SAPDV)

HSP 1 Score: 73.6 bits (179), Expect = 6.960e-11
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 2

Query:  197 LLLLSCLLKRPPYCRSRRTAMDDRDEYDGDGSPGEEDQPNTLV----GRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQK 454
            LL LS   KR P   S    ++  DE DGDG         T V    GRWT  EH LFL G  +YG+ W+ ++N++ TRTL QIRTHAQK
Sbjct:   39 LLELSSPPKREPTETSVEKLLESSDEDDGDGDDERVQASGTSVETQTGRWTKKEHELFLEGLKRYGKSWKHISNLVVTRTLVQIRTHAQK 128

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A1V9ZGA4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.600e-10
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 2

Query:  251 TAMDDRDEYDGDGSPGEED-----QPNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQK 454
            +A+ + DE + DG  G ED        T  GRWT  EH LFL G  +YG+ W+ +AN++ TRTL QIRTHAQK
Sbjct:   51 SALLESDEDEDDGEGGSEDGSTKSNVETHTGRWTKKEHELFLEGLRRYGKSWKHIANLVVTRTLVQIRTHAQK 123

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP)

HSP 1 Score: 64.3 bits (155), Expect = 1.890e-9
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 2

Query:  302 EDQPN-TLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQK 454
            +D PN T VGRWT  EH LFL G  ++G+ W+ +++++ TRTL QIRTHAQK
Sbjct:   10 DDVPNGTQVGRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQK 61

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A397ACY8_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACY8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.480e-8
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 2

Query:  230 PYCRSRRTAMDDR---DEYDGDGSPGEED----QPNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAVVGACISVL 520
            P  R+  ++ DD    D+ D D   G ++    +P T  GRWT  EH LFL G  +YG+ W+S++N++ +RTL QIRTHAQK      QK+ R +  GA    L
Sbjct:  136 PERRASASSSDDSGLGDDIDNDDDNGLDETLSGEPPT-TGRWTKKEHELFLEGLRRYGKSWKSISNLVVSRTLVQIRTHAQKY----LQKQSRSSKTGAAYQYL 234

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A0N7L7R3_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7R3_PLAHL)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-8
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 2

Query:  311 PNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAVVGACISVLPSR 529
            P T VGRWT  EH LFL G  ++G+ W+ +++++ TRTL QIRTHAQK      QK+ R A+     + + SR
Sbjct:  103 PGTQVGRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKY----LQKQSRGAIKNKSQTSISSR 171

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: UPI0007118842 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007118842)

HSP 1 Score: 65.5 bits (158), Expect = 1.770e-8
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2

Query:  272 EYDGDGSPGEEDQPNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKV------------GFANFQKKFREA 493
            E   +  PG   + NT  GRW  +EH LFL G  +YG +W+S+AN+I TR L Q+RTHAQK              +A  +KKF+E+
Sbjct:    8 EKSSEAEPGFVPRENT--GRWDESEHKLFLEGLQKYGSDWKSIANMISTRNLVQVRTHAQKYFQKLQKNSTNKSAYAECKKKFKES 91

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A0W8DBP4_PHYNI (LHY protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBP4_PHYNI)

HSP 1 Score: 67.4 bits (163), Expect = 1.950e-8
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 2

Query:  311 PNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAVVGA 505
            P T VGRWT  EH LFL G  ++G+ W+ +++++ TRTL QIRTHAQK      QK+ R A+  A
Sbjct:  127 PGTQVGRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKY----LQKQSRAAIKNA 187

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A7R9UFL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFL2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.360e-8
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2

Query:  323 VGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAVVGACISVLPSRVDSS*LKSTTGAA 568
            VGRWT  EH  FL G   YGREW+ +A  IKTRT  QIR+HAQK  FA   ++ +EA V    ++L  +++ S L     AA
Sbjct:  270 VGRWTREEHEAFLLGLRTYGREWKKVAQNIKTRTSAQIRSHAQKY-FAKLSREGKEAYVNGKWALLDDQIEVSDLSDPGQAA 350

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: D0NK49_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NK49_PHYIT)

HSP 1 Score: 65.9 bits (159), Expect = 3.420e-8
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 2

Query:  317 TLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAV---VGACISVLPSRVDSS*LKSTTGAAAPFP 580
            T VGRWT  EH LFL G  ++GR W+ +++++ TRTL QIRTHAQK      QK+ R A+     A  S   SRV  S L  ++  + P P
Sbjct:  135 TQVGRWTKREHELFLEGLQRFGRSWKKISSLVHTRTLVQIRTHAQKY----LQKQSRAAIKPDATATESQQHSRVAPSPLDYSSSLSQPAP 221

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BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Match: A0A329RTX4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RTX4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.630e-8
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 2

Query:  311 PNTLVGRWTTAEHHLFLWGYAQYGREWRSLANIIKTRTLTQIRTHAQKVGFANFQKKFREAV 496
            P T VGRWT  EH LFL G  ++G+ W+ +++++ TRTL QIRTHAQK      QK+ R A+
Sbjct:  124 PGTQVGRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKY----LQKQSRAAI 181

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig5876.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
T0Q0L9_SAPDV	6.960e-11	46.67	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]
A0A1V9ZGA4_9STRA	5.600e-10	49.32	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
G4ZZP8_PHYSP	1.890e-9	55.77	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A397ACY8_9STRA	1.480e-8	40.38	Uncharacterized protein n=7 Tax=Aphanomyces astaci...	[more]
A0A0N7L7R3_PLAHL	1.580e-8	45.21	Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re...	[more]
UPI0007118842	1.770e-8	41.86	hypothetical protein n=1 Tax=Blastocystis sp. subt...	[more]
A0A0W8DBP4_PHYNI	1.950e-8	49.23	LHY protein n=9 Tax=Phytophthora TaxID=4783 RepID=...	[more]
A0A7R9UFL2_9STRA	2.360e-8	46.34	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
D0NK49_PHYIT	3.420e-8	43.96	Uncharacterized protein n=2 Tax=Phytophthora infes...	[more]
A0A329RTX4_9STRA	3.630e-8	50.00	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig5876	contig	P-wetherbeei_contig5876:2..2165 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	1879
Hectar predicted targeting category	other localisation
Exons	2
Cds size	996

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186869.2694032-UTR-P-wetherbeei_contig5876:1..344	1683186869.2694032-UTR-P-wetherbeei_contig5876:1..344	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig5876 2..344 +
1683186869.2826464-UTR-P-wetherbeei_contig5876:630..1169	1683186869.2826464-UTR-P-wetherbeei_contig5876:630..1169	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig5876 631..1169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186869.2940657-CDS-P-wetherbeei_contig5876:1169..2165	1683186869.2940657-CDS-P-wetherbeei_contig5876:1169..2165	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig5876 1170..2165 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig5876.1.1	prot_P-wetherbeei_contig5876.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig5876 1170..2165 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig5876:2..2165+
coding sequence from alignment at P-wetherbeei_contig5876:2..2165+

protein sequence of mRNA_P-wetherbeei_contig5876.1.1

>prot_P-wetherbeei_contig5876.1.1 ID=prot_P-wetherbeei_contig5876.1.1|Name=mRNA_P-wetherbeei_contig5876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=332bp
MSRAAMAARVERTLEALMERQRQLEKRLHGSTGGGCSGSGSSGARSESQQ
QHGDAAPRRGSGGGSNGPSVSGTPSAAGAGPGAATGGQWHAQRGSPAEPC
GYSHGGSDDDGGGGDGGNGGDGKGDVDLGNGRRNKRVRAQEALARTIGRS
MHTISSTSDQTWRDERMREPAAGPADFVRSQTAAREAVTTRASNGGPERG
AERGGSNGGSWRDHGVSGGGDEGNGSYPNTNATGNGSASFNDGRGDSGFS
GQAALNGVRRGGGGGGGRGGGRSSDGEPGEYNPYLTSERGGGGTAGYDYD
VARHGDGRGVADAGHGCGGGSGRVDCGSATWR

mRNA from alignment at P-wetherbeei_contig5876:2..2165+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig5876.1.1 ID=mRNA_P-wetherbeei_contig5876.1.1|Name=mRNA_P-wetherbeei_contig5876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2164bp|location=Sequence derived from alignment at P-wetherbeei_contig5876:2..2165+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGTCAGTGGCCTGGAGGTACCTGTACCTACACCTGTGGAAGAATTGGT
AACTGTGGAAAGCCTTGGTATTTTCGTATTTTCCTGAGAAAATCGCATAC
GACATCCACGAGAGAAAGGAGGAGGAAAGGATTCGGCGGTGCTGTTCCAC
GGCACGTAGACCTGTTGCGCGGTGGATTCATTGAGGGAGCGGAAGGCTTC
TTTTGCTTTCTTGCCTTCTGAAACGACCGCCCTACTGTCGTTCTCGAAGA
ACAGCCATGGACGACAGAGACGAATACGACGGAGACGGATCGCCCGGTGA
AGAGGACCAGCCGAACACGTTAGTTGGCCGCTGGACGACTGCGGTAAGTA
TACTTCAGCCAAAAACGTCGTGGCCCGCTTGTGCCGCACCTGGTGCGCTT
CCTCGTGAAAGTGATGTCGCGCTTCTCTCCAGCATTCATTCCTTTTACTT
CGCCGTGCGTGAAGTTATCCGCGGAGCCGTGCTTTCGGGAAATCGACCTG
TTAGCTGAAATGGTTCGATTGAGGCTTTGCTATAGCCCCGATCCTGCAAC
GCCTCGACCCTCCTTCAATTATTGTCACTTAGCAATCACGATCGACGCGC
TTCACCCGCTGCGCCTCATCTTAAAACAGGAGCACCACCTCTTTCTCTGG
GGCTATGCCCAGTATGGCCGCGAATGGAGGAGTCTGGCAAACATCATCAA
GACGCGCACTCTGACTCAGATTCGCACGCACGCACAAAAGGTGGGTTTCG
CAAACTTCCAGAAAAAATTCCGAGAGGCCGTCGTTGGGGCATGTATTTCT
GTCTTGCCATCTCGAGTCGACAGCTCTTAGCTAAAATCCACGACGGGAGC
AGCAGCGCCCTTCCCTGCCATCGTCGAAAATTGTCCCGCCGCCGCTGCCT
TTGTACGCCACCGCGGAACTTTCCTTCTTTTTTATGATGCTCACTCTCTA
CTGACGCTTCCCCTAGGTCACCTCTTGCTCGAACTCCACCGGTCCCGGCT
CTTCGCCCGTGTCGCGCGGTACCACCGACTGCACGGCAGTATTTCGCGCG
GCTGGAGCGGGAGCAGCTGGAGATCTACAGCGAGGACGGCCGTGGCTCAG
ATGCCGACGATGGCGTCGCCGATGGCGACGTGGCCTGCGATAACGAAGAC
GTTGAAGACTGGCGCCGCATGAGCCGTGCCGCGATGGCCGCCCGCGTCGA
GCGCACGCTGGAGGCACTCATGGAGCGGCAGCGCCAGCTTGAAAAGCGGC
TCCATGGAAGCACCGGTGGCGGCTGCAGTGGCAGCGGCAGCAGCGGTGCC
CGCAGTGAGTCGCAGCAGCAACACGGCGACGCCGCGCCTCGCCGTGGCAG
CGGCGGTGGCAGCAACGGGCCTTCGGTATCGGGAACACCGTCCGCGGCGG
GTGCAGGGCCGGGGGCGGCGACGGGCGGGCAGTGGCATGCGCAGCGGGGC
TCCCCTGCAGAGCCGTGCGGTTACAGTCACGGCGGCAGCGACGACGACGG
TGGCGGTGGCGACGGCGGTAATGGCGGGGATGGCAAGGGCGACGTTGACT
TGGGCAATGGCCGCAGAAACAAGCGCGTCAGGGCCCAGGAAGCGCTTGCC
CGCACGATTGGCAGGTCCATGCACACCATCTCCTCCACCAGCGATCAGAC
TTGGCGCGACGAAAGAATGCGGGAGCCTGCCGCCGGTCCCGCTGACTTTG
TCCGCAGCCAGACAGCGGCGCGTGAGGCGGTTACGACCCGGGCGAGCAAC
GGCGGGCCCGAACGAGGCGCAGAGAGGGGGGGCAGCAACGGCGGCAGCTG
GCGTGACCATGGCGTGAGTGGCGGCGGCGATGAAGGCAATGGCAGCTATC
CGAACACCAACGCTACTGGAAATGGCAGTGCAAGCTTCAACGACGGCAGG
GGTGACAGCGGCTTCTCTGGCCAGGCTGCGTTGAATGGTGTACGGCGCGG
CGGCGGCGGCGGCGGCGGCCGGGGCGGTGGCAGAAGCAGTGATGGCGAAC
CTGGCGAGTACAATCCCTACCTCACCAGTGAACGCGGTGGCGGTGGGACC
GCAGGATACGACTACGACGTCGCCCGTCATGGCGACGGCCGCGGAGTCGC
TGATGCCGGCCACGGCTGCGGCGGTGGCAGCGGTAGGGTTGACTGCGGGA
GTGCGACTTGGCGG

Coding sequence (CDS) from alignment at P-wetherbeei_contig5876:2..2165+

>mRNA_P-wetherbeei_contig5876.1.1 ID=mRNA_P-wetherbeei_contig5876.1.1|Name=mRNA_P-wetherbeei_contig5876.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=996bp|location=Sequence derived from alignment at P-wetherbeei_contig5876:2..2165+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGTGCCGCGATGGCCGCCCGCGTCGAGCGCACGCTGGAGGCACT
CATGGAGCGGCAGCGCCAGCTTGAAAAGCGGCTCCATGGAAGCACCGGTG
GCGGCTGCAGTGGCAGCGGCAGCAGCGGTGCCCGCAGTGAGTCGCAGCAG
CAACACGGCGACGCCGCGCCTCGCCGTGGCAGCGGCGGTGGCAGCAACGG
GCCTTCGGTATCGGGAACACCGTCCGCGGCGGGTGCAGGGCCGGGGGCGG
CGACGGGCGGGCAGTGGCATGCGCAGCGGGGCTCCCCTGCAGAGCCGTGC
GGTTACAGTCACGGCGGCAGCGACGACGACGGTGGCGGTGGCGACGGCGG
TAATGGCGGGGATGGCAAGGGCGACGTTGACTTGGGCAATGGCCGCAGAA
ACAAGCGCGTCAGGGCCCAGGAAGCGCTTGCCCGCACGATTGGCAGGTCC
ATGCACACCATCTCCTCCACCAGCGATCAGACTTGGCGCGACGAAAGAAT
GCGGGAGCCTGCCGCCGGTCCCGCTGACTTTGTCCGCAGCCAGACAGCGG
CGCGTGAGGCGGTTACGACCCGGGCGAGCAACGGCGGGCCCGAACGAGGC
GCAGAGAGGGGGGGCAGCAACGGCGGCAGCTGGCGTGACCATGGCGTGAG
TGGCGGCGGCGATGAAGGCAATGGCAGCTATCCGAACACCAACGCTACTG
GAAATGGCAGTGCAAGCTTCAACGACGGCAGGGGTGACAGCGGCTTCTCT
GGCCAGGCTGCGTTGAATGGTGTACGGCGCGGCGGCGGCGGCGGCGGCGG
CCGGGGCGGTGGCAGAAGCAGTGATGGCGAACCTGGCGAGTACAATCCCT
ACCTCACCAGTGAACGCGGTGGCGGTGGGACCGCAGGATACGACTACGAC
GTCGCCCGTCATGGCGACGGCCGCGGAGTCGCTGATGCCGGCCACGGCTG
CGGCGGTGGCAGCGGTAGGGTTGACTGCGGGAGTGCGACTTGGCGG