mRNA_P-wetherbeei_contig5875.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5875.3.1
Unique NamemRNA_P-wetherbeei_contig5875.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5875.3.1 vs. uniprot
Match: A0A251MX11_PRUPE (Fucosyltransferase n=2 Tax=Prunus persica TaxID=3760 RepID=A0A251MX11_PRUPE)

HSP 1 Score: 75.9 bits (185), Expect = 1.890e-13
Identity = 48/138 (34.78%), Postives = 63/138 (45.65%), Query Frame = 1 
Query:   22 RPCRCFDGGSGXXXXXSAVVHHLFVRERGSLEFFDLLLAGDQLTLAGLTSALTKELTRRGHVPLWTLDRDARGATVKRHPHGGTGTPAFDFRVYRVYPANPTTTVKNVLAREAAFASDDDVAAHVLSTPCPELEVVLI 435
            RPC+C  G        SAVV+HL+VRERG  E   + L    LTL    S +  +   + HVP+W  +R            GG      DF++YR+YP   T        R   F  D D   HV S PC + EV+L+
Sbjct:  227 RPCKCTRG--------SAVVYHLYVRERGRFEMESIFLRSGNLTLGAFESLVLTKFKSQKHVPIWKQERP-------ESIRGGD-----DFKIYRIYPVGMTQRQALYTFR---FNGDADFRRHVESNPCAKFEVILV 341
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BLAST of mRNA_P-wetherbeei_contig5875.3.1 vs. uniprot
Match: A0A251MWX8_PRUPE (Fucosyltransferase n=10 Tax=Prunus TaxID=3754 RepID=A0A251MWX8_PRUPE)

HSP 1 Score: 75.9 bits (185), Expect = 2.940e-13
Identity = 48/138 (34.78%), Postives = 63/138 (45.65%), Query Frame = 1 
Query:   22 RPCRCFDGGSGXXXXXSAVVHHLFVRERGSLEFFDLLLAGDQLTLAGLTSALTKELTRRGHVPLWTLDRDARGATVKRHPHGGTGTPAFDFRVYRVYPANPTTTVKNVLAREAAFASDDDVAAHVLSTPCPELEVVLI 435
            RPC+C  G        SAVV+HL+VRERG  E   + L    LTL    S +  +   + HVP+W  +R            GG      DF++YR+YP   T        R   F  D D   HV S PC + EV+L+
Sbjct:  389 RPCKCTRG--------SAVVYHLYVRERGRFEMESIFLRSGNLTLGAFESLVLTKFKSQKHVPIWKQERP-------ESIRGGD-----DFKIYRIYPVGMTQRQALYTFR---FNGDADFRRHVESNPCAKFEVILV 503
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5875.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A251MX11_PRUPE1.890e-1334.78Fucosyltransferase n=2 Tax=Prunus persica TaxID=37... [more]
A0A251MWX8_PRUPE2.940e-1334.78Fucosyltransferase n=10 Tax=Prunus TaxID=3754 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5875contigP-wetherbeei_contig5875:2998..3435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog248742.XP_005645422.1
Preferred nameFUT11
PFAMsGlyco_transf_10
Model size438
Max annot lvl33090|Viridiplantae
KEGG koko:K00753
KEGG ReactionR06015,R09318,R11318
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005996,GO:0006004,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008417,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016052,GO:0016740,GO:0016757,GO:0016758,GO:0018392,GO:0019317,GO:0019318,GO:0019320,GO:0019538,GO:0031410,GO:0031982,GO:0031984,GO:0034645,GO:0036065,GO:0036211,GO:0042354,GO:0042355,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046920,GO:0070085,GO:0071704,GO:0097708,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons1
Evalue3.69e-15
EggNOG OGsKOG2619@1|root,KOG2619@2759|Eukaryota,37QW4@33090|Viridiplantae
EC2.4.1.214
Descriptionglycoprotein 3-alpha-L-fucosyltransferase
Cds size438
COG categoryG
CAZyGT10
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186869.1121273-CDS-P-wetherbeei_contig5875:2997..34351683186869.1121273-CDS-P-wetherbeei_contig5875:2997..3435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5875 2998..3435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5875.3.1prot_P-wetherbeei_contig5875.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5875 2998..3435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5875.3.1

>prot_P-wetherbeei_contig5875.3.1 ID=prot_P-wetherbeei_contig5875.3.1|Name=mRNA_P-wetherbeei_contig5875.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
AQEPVAPRPCRCFDGGSGGGGGESAVVHHLFVRERGSLEFFDLLLAGDQL
TLAGLTSALTKELTRRGHVPLWTLDRDARGATVKRHPHGGTGTPAFDFRV
YRVYPANPTTTVKNVLAREAAFASDDDVAAHVLSTPCPELEVVLI*
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mRNA from alignment at P-wetherbeei_contig5875:2998..3435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5875.3.1 ID=mRNA_P-wetherbeei_contig5875.3.1|Name=mRNA_P-wetherbeei_contig5875.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5875:2998..3435- (Phaeothamnion wetherbeei SAG_119_79)
GCGCAAGAACCTGTGGCCCCACGGCCATGTCGCTGCTTTGACGGCGGCAG
CGGCGGCGGTGGCGGCGAAAGCGCCGTGGTGCACCACCTCTTCGTGCGGG
AGCGGGGCTCCTTGGAGTTCTTCGACCTTTTGCTGGCCGGCGACCAGCTG
ACGCTGGCCGGGCTGACATCCGCCTTGACAAAGGAGCTGACTCGCCGCGG
CCATGTCCCACTGTGGACGCTCGACCGGGATGCGCGCGGTGCCACGGTTA
AGCGGCACCCGCACGGCGGCACCGGCACACCCGCCTTCGACTTTCGCGTC
TACAGAGTCTACCCGGCGAATCCGACGACCACCGTAAAGAACGTGCTGGC
ACGCGAGGCGGCGTTCGCGAGCGACGACGACGTAGCGGCGCACGTGTTGT
CCACGCCCTGCCCGGAGCTGGAGGTGGTGCTGATTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5875:2998..3435-

>mRNA_P-wetherbeei_contig5875.3.1 ID=mRNA_P-wetherbeei_contig5875.3.1|Name=mRNA_P-wetherbeei_contig5875.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5875:2998..3435- (Phaeothamnion wetherbeei SAG_119_79)
GCGCAAGAACCTGTGGCCCCACGGCCATGTCGCTGCTTTGACGGCGGCAG
CGGCGGCGGTGGCGGCGAAAGCGCCGTGGTGCACCACCTCTTCGTGCGGG
AGCGGGGCTCCTTGGAGTTCTTCGACCTTTTGCTGGCCGGCGACCAGCTG
ACGCTGGCCGGGCTGACATCCGCCTTGACAAAGGAGCTGACTCGCCGCGG
CCATGTCCCACTGTGGACGCTCGACCGGGATGCGCGCGGTGCCACGGTTA
AGCGGCACCCGCACGGCGGCACCGGCACACCCGCCTTCGACTTTCGCGTC
TACAGAGTCTACCCGGCGAATCCGACGACCACCGTAAAGAACGTGCTGGC
ACGCGAGGCGGCGTTCGCGAGCGACGACGACGTAGCGGCGCACGTGTTGT
CCACGCCCTGCCCGGAGCTGGAGGTGGTGCTGATTTGA
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