mRNA_P-wetherbeei_contig58716.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58716.1.1
Unique NamemRNA_P-wetherbeei_contig58716.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: UPI001FF93304 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 1 TaxID=241591 RepID=UPI001FF93304)

HSP 1 Score: 178 bits (452), Expect = 1.110e-55
Identity = 91/110 (82.73%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 MPRTPDFCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            M RT  FCPDR   + QLVCIDPE+VR IWP V+PLI++AIV+TGLSAFA IERDILAGISLLWVAWNGS +EAAASTSLQQTEAGKVCVITACAG GMTRWLSLIRGIE
Sbjct:    1 MSRTRVFCPDRCDNT-QLVCIDPEYVREIWPSVAPLIKQAIVRTGLSAFATIERDILAGISLLWVAWNGSVVEAAASTSLQQTEAGKVCVITACAGTGMTRWLSLIRGIE 109
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: A0A5P6PB44_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium betae TaxID=244734 RepID=A0A5P6PB44_9BRAD)

HSP 1 Score: 167 bits (424), Expect = 1.690e-51
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   28 DRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            D R+G  QLVC+DP H+R IWPLV  L++RAIVKTGLSAFA +ERDIL G+SLLWVAWNG+AIEA ASTSLQQTEAGKVCVITACAG GMTRW SLIRGIE
Sbjct:    3 DGRAGDTQLVCVDPAHIREIWPLVGRLLKRAIVKTGLSAFATVERDILDGVSLLWVAWNGTAIEAVASTSLQQTEAGKVCVITACAGVGMTRWQSLIRGIE 103
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: UPI001FD8EA9E (hypothetical protein n=1 Tax=Bradyrhizobium sp. URHA0013 TaxID=1380352 RepID=UPI001FD8EA9E)

HSP 1 Score: 167 bits (423), Expect = 3.390e-51
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:   19 FCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            FCPD+R  + QLVCIDP  VR IWPLV+PLI+ AIV+TGLS+F  IERDIL+GI+LLWVAWNGS+IEA ASTS+QQTEAGKVCV+TACAGAGMTRWL+LIRGIE
Sbjct:   12 FCPDQRDRT-QLVCIDPGRVREIWPLVAPLIKGAIVRTGLSSFTTIERDILSGIALLWVAWNGSSIEAVASTSVQQTEAGKVCVVTACAGAGMTRWLALIRGIE 114
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: A0A7L8VZR7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. SEMIA TaxID=2597515 RepID=A0A7L8VZR7_9BRAD)

HSP 1 Score: 165 bits (417), Expect = 2.690e-50
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 MPRTPDFCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            MP   D   DR +G  QLVCIDPE+VR IWPLV+PLI RAIV+TGLSAFAAIERDIL G SLLWVAW+GS IEA ASTSL+QTEAGKVCVITACAG G+ RWLSLI GIE
Sbjct:    1 MPGPRDLWRDRCAGDIQLVCIDPEYVREIWPLVAPLILRAIVRTGLSAFAAIERDILDGTSLLWVAWSGSTIEAVASTSLEQTEAGKVCVITACAGVGIARWLSLIGGIE 110
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: UPI001FCE3880 (hypothetical protein n=1 Tax=Bradyrhizobium amphicarpaeae TaxID=1404768 RepID=UPI001FCE3880)

HSP 1 Score: 162 bits (409), Expect = 3.920e-49
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 MPRTPDFCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            MP+ P   PD   G+ QLV +DP +VR +WPLV+PLIERAIV TGLSAFAAIE+DIL G SLLWVAWNG+ IEAAA+TSLQQT+AGKVCVITACAG GMTRWL LI GIE
Sbjct:    1 MPQAPGLWPDGHHGA-QLVSVDPGYVREVWPLVAPLIERAIVTTGLSAFAAIEQDILVGASLLWVAWNGAVIEAAAATSLQQTDAGKVCVITACAGTGMTRWLPLIGGIE 109
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: UPI001BA65774 (hypothetical protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=UPI001BA65774)

HSP 1 Score: 160 bits (404), Expect = 2.330e-48
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:   28 DRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            D  +G  QLVCIDPEHVR+IWPL +PL+++AIVKTGLSAFA IERDIL G +LLWVAWNGS IEAAASTSLQQT+AGKVC+ITACAG G+ RWL LI GIE
Sbjct:   10 DPCAGGTQLVCIDPEHVRSIWPLTAPLLKQAIVKTGLSAFATIERDILDGTALLWVAWNGSVIEAAASTSLQQTDAGKVCIITACAGTGVRRWLPLIGGIE 110
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: UPI002011B61A (hypothetical protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI002011B61A)

HSP 1 Score: 157 bits (398), Expect = 2.090e-47
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 MPRTPDFCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            +P+T    PDRR  + QLVC+DP+ VR +WPLV+PLIERAIV TGLS+FAAIE DIL G SLLWVA NG+ IEAAA+TSLQQT++GK+CVITACAG GM RWL LIRGIE
Sbjct:    5 LPQTRGVYPDRRHNA-QLVCLDPDRVREVWPLVAPLIERAIVTTGLSSFAAIEHDILVGASLLWVASNGAVIEAAAATSLQQTDSGKICVITACAGTGMARWLPLIRGIE 113
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: A0A7S9D9M2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium genosp. B TaxID=83627 RepID=A0A7S9D9M2_9BRAD)

HSP 1 Score: 153 bits (387), Expect = 5.650e-46
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:   49 QLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            QL C+DP+ VR IWP V+PL++RAIV+TGLSAFAAIE DIL G SLLWVAWNG AIEAAASTSLQQT+AGKVCV+TACAGAGMTRWL LI  IE
Sbjct:    2 QLACVDPKRVREIWPAVAPLLKRAIVRTGLSAFAAIEHDILDGSSLLWVAWNGRAIEAAASTSLQQTDAGKVCVVTACAGAGMTRWLPLIHDIE 95
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: A0A6G9A7W6_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium symbiodeficiens TaxID=1404367 RepID=A0A6G9A7W6_9BRAD)

HSP 1 Score: 146 bits (368), Expect = 6.170e-43
Identity = 73/94 (77.66%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:   49 QLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            QLVCIDP  VR IWP V+PL++RAI KTGL+ FA IE DIL G SLLW+AW+G A EA ASTSLQQT+AGKVCVITACAGAGM RWLSLIRGIE
Sbjct:   13 QLVCIDPARVRAIWPSVAPLLKRAIAKTGLAEFATIEFDILDGRSLLWIAWSGRAAEAVASTSLQQTDAGKVCVITACAGAGMNRWLSLIRGIE 106
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BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Match: A0A1H7XBZ0_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium sp. OK095 TaxID=1882760 RepID=A0A1H7XBZ0_9BRAD)

HSP 1 Score: 146 bits (369), Expect = 1.370e-42
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:   46 RQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFAAIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMTRWLSLIRGIE 330
            +QLVC+DPE VR+IWP V+PL+++AI KTGL+AFA+IERDIL G SLLW+AWNGS+I A ASTSLQ+TEAGKVC+ITACAG+ M RWL LI GIE
Sbjct:   31 QQLVCVDPECVRDIWPFVAPLLKQAIAKTGLAAFASIERDILDGSSLLWIAWNGSSIAAVASTSLQKTEAGKVCIITACAGSSMVRWLPLICGIE 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58716.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FF933041.110e-5582.73hypothetical protein n=1 Tax=Bradyrhizobium sp. 1 ... [more]
A0A5P6PB44_9BRAD1.690e-5180.20Uncharacterized protein n=2 Tax=Bradyrhizobium bet... [more]
UPI001FD8EA9E3.390e-5178.85hypothetical protein n=1 Tax=Bradyrhizobium sp. UR... [more]
A0A7L8VZR7_9BRAD2.690e-5077.27Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001FCE38803.920e-4974.55hypothetical protein n=1 Tax=Bradyrhizobium amphic... [more]
UPI001BA657742.330e-4877.23hypothetical protein n=1 Tax=Bradyrhizobium japoni... [more]
UPI002011B61A2.090e-4771.82hypothetical protein n=1 Tax=Bradyrhizobium diazoe... [more]
A0A7S9D9M2_9BRAD5.650e-4679.79Uncharacterized protein n=1 Tax=Bradyrhizobium gen... [more]
A0A6G9A7W6_9BRAD6.170e-4377.66Uncharacterized protein n=2 Tax=Bradyrhizobium sym... [more]
A0A1H7XBZ0_9BRAD1.370e-4273.68Uncharacterized protein n=2 Tax=Bradyrhizobium sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58716contigP-wetherbeei_contig58716:173..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog113395.AXAI01000002_gene5446
Model size330
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.25e-35
EggNOG OGs2A4W6@1|root,302SA@2|Bacteria,1N3I3@1224|Proteobacteria,2UE78@28211|Alphaproteobacteria,3K0AC@41294|Bradyrhizobiaceae
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.7110922-CDS-P-wetherbeei_contig58716:172..5021683186868.7110922-CDS-P-wetherbeei_contig58716:172..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58716 173..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58716.1.1prot_P-wetherbeei_contig58716.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58716 173..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58716.1.1

>prot_P-wetherbeei_contig58716.1.1 ID=prot_P-wetherbeei_contig58716.1.1|Name=mRNA_P-wetherbeei_contig58716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MPRTPDFCPDRRSGSRQLVCIDPEHVRNIWPLVSPLIERAIVKTGLSAFA
AIERDILAGISLLWVAWNGSAIEAAASTSLQQTEAGKVCVITACAGAGMT
RWLSLIRGIE
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mRNA from alignment at P-wetherbeei_contig58716:173..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58716.1.1 ID=mRNA_P-wetherbeei_contig58716.1.1|Name=mRNA_P-wetherbeei_contig58716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58716:173..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGCACCCCCGATTTCTGCCCGGATCGACGCAGCGGCAGCAGGCA
ACTCGTCTGCATTGATCCTGAACACGTGCGCAACATCTGGCCGCTTGTCT
CTCCTCTCATCGAGCGGGCGATTGTCAAGACCGGGTTGTCGGCGTTCGCT
GCGATCGAGCGCGACATACTTGCTGGTATTTCGCTGCTTTGGGTCGCCTG
GAATGGCAGCGCGATCGAGGCTGCCGCCTCGACAAGCCTCCAGCAGACAG
AGGCGGGGAAGGTCTGCGTCATCACGGCGTGCGCCGGCGCTGGCATGACG
CGCTGGCTATCACTGATACGCGGGATCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58716:173..502+

>mRNA_P-wetherbeei_contig58716.1.1 ID=mRNA_P-wetherbeei_contig58716.1.1|Name=mRNA_P-wetherbeei_contig58716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58716:173..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCGCACCCCCGATTTCTGCCCGGATCGACGCAGCGGCAGCAGGCA
ACTCGTCTGCATTGATCCTGAACACGTGCGCAACATCTGGCCGCTTGTCT
CTCCTCTCATCGAGCGGGCGATTGTCAAGACCGGGTTGTCGGCGTTCGCT
GCGATCGAGCGCGACATACTTGCTGGTATTTCGCTGCTTTGGGTCGCCTG
GAATGGCAGCGCGATCGAGGCTGCCGCCTCGACAAGCCTCCAGCAGACAG
AGGCGGGGAAGGTCTGCGTCATCACGGCGTGCGCCGGCGCTGGCATGACG
CGCTGGCTATCACTGATACGCGGGATCGAA
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