mRNA_P-wetherbeei_contig5867.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5867.1.1
Unique NamemRNA_P-wetherbeei_contig5867.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7X9KLY3_9ACTN (Multicopper oxidase domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KLY3_9ACTN)

HSP 1 Score: 263 bits (673), Expect = 2.060e-88
Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 1
Query:    1 MTHTVRRLPLIAGIVALAALVAACGQTRESSSTGTPDAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTVE 468
            MTHT+R LPLIAGIVA+  LVAACG+TR+SSS  + D+ A+PAGAR V++AMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGD S HSMGEAAVTVQPGAAG+LSYTF EPGTYEVGCHQPGHYGAGMKI VTVE
Sbjct:    1 MTHTLR-LPLIAGIVAITTLVAACGETRQSSSDASRDSAAAPAGARAVDVAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDASTHSMGEAAVTVQPGAAGQLSYTFTEPGTYEVGCHQPGHYGAGMKIEVTVE 155          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7V9V7K7_9ACTN (Cupredoxin domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9V7K7_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 5.110e-32
Identity = 70/150 (46.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   16 RRLPLIAGIVALAALVAACGQTRESSSTGTPDAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            RR+  +  +  L  L AACG + E SST  PD       AR +E+ M D+ F  T + V+ GE + F F NTGQ+ HDAFIGD AAQ EH+ EM   G    H  G  AV+V+PG   EL+ TF  P    +GCHQPGHY  GMK+ V V
Sbjct:    2 RRVMFLLAVPVLVVL-AACGSSDEPSSTAGPD------DARVIELEMRDVAFAPTQVDVRAGEKVRFVFRNTGQVTHDAFIGDQAAQDEHEKEMR--GGHGDHGKGSDAVSVKPGNTAELTQTFDRPAQILIGCHQPGHYTGGMKVTVNV 142          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A6J4IYQ1_9ACTN (Cupredoxin_1 domain-containing protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IYQ1_9ACTN)

HSP 1 Score: 117 bits (294), Expect = 5.850e-31
Identity = 70/150 (46.67%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   16 RRLPLIAGIVALAALVAACGQTRESSSTGTPDAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            RR+  +  I  LA L AACG + + ++T      A    AR VE+ M DI F  T + V+ GE + F F NTGQ+ HDAFIGD AAQ EH+ EM   G    H  G  AV+V+PG   +L+YTF  PG   +GCHQPGHY  GMK  V +
Sbjct:    2 RRVMFLLAIPVLAVL-AACGSSDDGNTT------AGSGDARVVEVEMRDIAFAPTAVDVRAGEKVRFVFKNTGQVVHDAFIGDQAAQDEHEKEMR--GGHGDHGKGGNAVSVKPGKTEQLTYTFDRPGQILIGCHQPGHYTGGMKATVNI 142          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: UPI0013002B10 (cupredoxin domain-containing protein n=1 Tax=Euzebya rosea TaxID=2052804 RepID=UPI0013002B10)

HSP 1 Score: 113 bits (283), Expect = 4.460e-29
Identity = 71/161 (44.10%), Postives = 88/161 (54.66%), Query Frame = 1
Query:    1 MTHTVRRLPLIAGIVALAALVAACGQTRESSSTGTPDAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEA--------AVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAV 459
            MT T RR PL   +VA+ A+  A     ++ S    D+GA+ A  RTVE+ M D+ F   ++TV  GET+  RFTN G++PHDAF+GDAAAQ  H  EMA                     AVTV PG  GEL  T    G   +GCHQPGHY AGM + V
Sbjct:    1 MTTTRRRWPLTLALVAITAMACAA---PDAGSDPASDSGATAAPGRTVEVTMTDLAFSPASITVADGETVRVRFTNDGELPHDAFVGDAAAQDAHGAEMAXXXXXXXXXXXXXXXXXXXXXAVTVDPGETGELLVTGTASGELLIGCHQPGHYEAGMVMQV 158          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7V9B4F3_9ACTN (Cupredoxin domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B4F3_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 8.780e-29
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  109 DAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHM-GDTSVHSMGEA-AVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            DA A     RTVEI M D  F+  ++ V  GET+ F FTNTG++ HDAF+GD AAQ  H+ +M    GD      G++ AVTV+PG   EL++TF E G+ E+GCHQPGHY  GMK+A+ V
Sbjct:   27 DATAGNGDVRTVEIDMADNVFEPDSVDVNRGETVRFVFTNTGEVAHDAFVGDTAAQDGHEMDMREAEGDEHGSGHGDSGAVTVEPGDTAELTHTFDESGSLEIGCHQPGHYDGGMKLAIDV 147          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7W0P0L7_9ACTN (Cupredoxin domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0P0L7_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 1.080e-28
Identity = 77/164 (46.95%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   19 RLPLIAGIVALAALV-AACGQTRESSSTGTPD-----------AGASPAGA-RTVEI-AMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTVE 468
            RL   A ++A+AALV  AC  T   ++T T D           A A PA A RTVEI A +D +FD  TLTV  GETI F+  N GQ PHD  +GD  AQ EH+ E+A MG T +H    A V+V  G   EL++ F + GT  +GCHQPGHY AGM   +TV+
Sbjct:    5 RLRPSAFVLAVAALVLGACTGTSAPTATSTTDGTDPGIEFTFGAPADPAEADRTVEIVASDDFRFDPATLTVVAGETITFQIVNAGQDPHDFTLGDQVAQDEHEAEVADMGGTMMHDTANA-VSVDAGETKELTWRFTQAGTVLIGCHQPGHYAAGMTGQITVQ 167          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A349B618_9ACTN (Cupredoxin_1 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B618_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 4.000e-26
Identity = 68/159 (42.77%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   16 RRLPLIAGIVALAALV-AACGQTRESSSTGTPDAGASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMG-------DTSVHSMGE-AAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            R   L  G+VA AALV AACG   + ++ GT D        RT+E+ MEDI F    + V+ GET+ F F N G I HDAFIGD  AQ EH+ EM           DT  H   E   +TV PG  GE+++TF       +GCH+ GHY AGM + + V
Sbjct:    3 RTTTLFIGVVATAALVLAACGDDDDGATIGTED------DPRTIEVDMEDIAFSPDQVEVQDGETVRFVFHNKGAIAHDAFIGDEEAQEEHEMEMRXXXXXXXXGDDTGGHDEDEEGGITVMPGETGEITHTFHADDNVMIGCHEEGHYDAGMIMTIDV 155          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7W0NYG0_9ACTN (Multicopper oxidase domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0NYG0_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 4.000e-26
Identity = 66/147 (44.90%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   58 LVAACGQTRESSSTGTPDAG------ASPAGA----RTVEIAMED-IKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            L+ ACG +  S++    DA         PA +    R VEI   D + FD + LT  TGET+ FR  N G I HD  +GD   Q EH++EMA MG  +  +    AVTV  GA  EL++TF +PGT  +GCHQPGHY AGMK  +TV
Sbjct:   10 LITACGGSASSTTAAGSDANQGEFAFGEPADSSNTDRIVEIVATDGLVFDPSDLTATTGETVTFRIVNEGTIIHDFTLGDEVTQDEHEEEMAEMGGMAHEASN--AVTVAAGATKELTWTFTQPGTVLIGCHQPGHYDAGMKGQITV 154          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A346Y302_9ACTN (Copper tolerance protein n=2 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346Y302_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 5.350e-26
Identity = 68/159 (42.77%), Postives = 84/159 (52.83%), Query Frame = 1
Query:    1 MTHTVRRLPLIAGIVALAALVAACGQTRESSSTGTPDAG----ASPAGARTVEIAMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEA--AVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAV 459
            M  T R  PL+  ++A+ A+  A            PDAG    AS A  RT+E+ M D+ F  T++TV  GET+  RFTN G +PHDAF+GDA AQ  H                 A  AVTV+PG  GEL  T    G   +GCHQPGHYGAGM + V
Sbjct:    4 MITTRRPWPLVLALMAVTAMACAA-----------PDAGSDDTASAAPERTIEVTMTDLAFTPTSITVADGETVRVRFTNDGALPHDAFVGDAEAQDAHXXXXXXXXXXXXXXXAGADDAVTVEPGETGELLVTGTASGDLLIGCHQPGHYGAGMVMQV 151          
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Match: A0A7V9C6E1_9ACTN (Cupredoxin domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9C6E1_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 3.910e-24
Identity = 60/118 (50.85%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  118 ASPAGA-RTVEI-AMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMAHMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMKIAVTV 465
            A PA A R+VEI A +D +F    LTV  GET+ FR  N GQ+ HD  +GD AAQ EH+ +MA   D  + S    AVTVQ G   EL++ F E GT  +GCHQPGHY AGM   +TV
Sbjct:   42 ADPAEADRSVEIVANDDFRFTPPALTVVAGETVTFRIVNAGQVAHDFTLGDQAAQDEHEAQMAE--DGMIMSDAPNAVTVQAGETEELTWRFTEAGTVLIGCHQPGHYAAGMTGEITV 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5867.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KLY3_9ACTN2.060e-8885.90Multicopper oxidase domain-containing protein n=2 ... [more]
A0A7V9V7K7_9ACTN5.110e-3246.67Cupredoxin domain-containing protein n=1 Tax=Actin... [more]
A0A6J4IYQ1_9ACTN5.850e-3146.67Cupredoxin_1 domain-containing protein n=1 Tax=unc... [more]
UPI0013002B104.460e-2944.10cupredoxin domain-containing protein n=1 Tax=Euzeb... [more]
A0A7V9B4F3_9ACTN8.780e-2950.41Cupredoxin domain-containing protein n=1 Tax=Acidi... [more]
A0A7W0P0L7_9ACTN1.080e-2846.95Cupredoxin domain-containing protein n=1 Tax=Acidi... [more]
A0A349B618_9ACTN4.000e-2642.77Cupredoxin_1 domain-containing protein n=1 Tax=Aci... [more]
A0A7W0NYG0_9ACTN4.000e-2644.90Multicopper oxidase domain-containing protein n=1 ... [more]
A0A346Y302_9ACTN5.350e-2642.77Copper tolerance protein n=2 Tax=Euzebya pacifica ... [more]
A0A7V9C6E1_9ACTN3.910e-2450.85Cupredoxin domain-containing protein n=1 Tax=Acidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5867contigP-wetherbeei_contig5867:84..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1229780.BN381_220038
Preferred namecopC
PFAMsCopper-bind,Cupredoxin_1,CusF_Ec
Model size471
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.71e-19
EggNOG OGsCOG4454@1|root,COG4454@2|Bacteria
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186868.044412-CDS-P-wetherbeei_contig5867:83..5541683186868.044412-CDS-P-wetherbeei_contig5867:83..554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5867 84..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5867.1.1prot_P-wetherbeei_contig5867.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5867 84..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5867.1.1

>prot_P-wetherbeei_contig5867.1.1 ID=prot_P-wetherbeei_contig5867.1.1|Name=mRNA_P-wetherbeei_contig5867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MTHTVRRLPLIAGIVALAALVAACGQTRESSSTGTPDAGASPAGARTVEI
AMEDIKFDQTTLTVKTGETIDFRFTNTGQIPHDAFIGDAAAQMEHDDEMA
HMGDTSVHSMGEAAVTVQPGAAGELSYTFAEPGTYEVGCHQPGHYGAGMK
IAVTVE*
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mRNA from alignment at P-wetherbeei_contig5867:84..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5867.1.1 ID=mRNA_P-wetherbeei_contig5867.1.1|Name=mRNA_P-wetherbeei_contig5867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:84..554- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCACACAGTTCGACGCCTCCCGTTGATCGCAGGCATCGTGGCTCT GGCCGCCCTCGTCGCCGCGTGCGGACAGACACGCGAGTCCAGCTCAACCG GCACCCCCGATGCTGGTGCCAGCCCGGCGGGCGCCAGAACTGTCGAGATC GCTATGGAAGACATCAAGTTCGACCAGACAACGCTCACCGTCAAGACAGG CGAGACGATCGACTTCCGGTTCACCAACACTGGCCAGATCCCCCATGACG CATTCATCGGTGACGCCGCGGCTCAGATGGAACACGACGACGAGATGGCA CACATGGGCGACACATCGGTCCATTCGATGGGCGAGGCCGCCGTCACGGT CCAGCCGGGCGCCGCCGGCGAGCTCTCGTACACCTTTGCCGAACCCGGCA CCTACGAAGTCGGCTGCCACCAGCCCGGCCACTACGGAGCGGGCATGAAG ATCGCGGTCACCGTCGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5867:84..554-

>mRNA_P-wetherbeei_contig5867.1.1 ID=mRNA_P-wetherbeei_contig5867.1.1|Name=mRNA_P-wetherbeei_contig5867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig5867:84..554- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCACACAGTTCGACGCCTCCCGTTGATCGCAGGCATCGTGGCTCT
GGCCGCCCTCGTCGCCGCGTGCGGACAGACACGCGAGTCCAGCTCAACCG
GCACCCCCGATGCTGGTGCCAGCCCGGCGGGCGCCAGAACTGTCGAGATC
GCTATGGAAGACATCAAGTTCGACCAGACAACGCTCACCGTCAAGACAGG
CGAGACGATCGACTTCCGGTTCACCAACACTGGCCAGATCCCCCATGACG
CATTCATCGGTGACGCCGCGGCTCAGATGGAACACGACGACGAGATGGCA
CACATGGGCGACACATCGGTCCATTCGATGGGCGAGGCCGCCGTCACGGT
CCAGCCGGGCGCCGCCGGCGAGCTCTCGTACACCTTTGCCGAACCCGGCA
CCTACGAAGTCGGCTGCCACCAGCCCGGCCACTACGGAGCGGGCATGAAG
ATCGCGGTCACCGTCGAGTGA
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