mRNA_P-wetherbeei_contig58667.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58667.1.1
Unique NamemRNA_P-wetherbeei_contig58667.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A521MB97_9HYPH (GlxA family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MB97_9HYPH)

HSP 1 Score: 307 bits (786), Expect = 4.800e-103
Identity = 157/168 (93.45%), Postives = 159/168 (94.64%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            LLVAGGSRGLKAAM    LRRWLRK APG RRYGSVCTGAFVLAAAGLLDGKRVATHWSSC RLAERF  LEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAA+ANLIARHFVLYARRPGYQSQFSPMLQAQ+AAETPFVKLIDWMQAHLDQPLDVPALAAR
Sbjct:   71 LLVAGGSRGLKAAMDHEGLRRWLRKAAPGARRYGSVCTGAFVLAAAGLLDGKRVATHWSSCDRLAERFAGLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAALANLIARHFVLYARRPGYQSQFSPMLQAQTAAETPFVKLIDWMQAHLDQPLDVPALAAR 238          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A259MVC4_9PROT (AraC family transcriptional regulator n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MVC4_9PROT)

HSP 1 Score: 286 bits (733), Expect = 5.750e-95
Identity = 142/168 (84.52%), Postives = 155/168 (92.26%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            LLVAGGSRGLKA M R D+RRWLRK AP T+R+GSVCTGAFVLAAAGLLDG+RVATHW+SCQRLAE+F  L VDAD+LYVVDGKVWTSAGVTTGIDMALALVEADLGAA ANLIARHFVLYARRPGYQSQFSP+LQ Q+ A+ PF +LI+WMQAHLD+PLDVPALAAR
Sbjct:   71 LLVAGGSRGLKAVMAREDVRRWLRKAAPQTKRFGSVCTGAFVLAAAGLLDGRRVATHWASCQRLAEKFPALTVDADALYVVDGKVWTSAGVTTGIDMALALVEADLGAATANLIARHFVLYARRPGYQSQFSPLLQVQTDADAPFARLIEWMQAHLDEPLDVPALAAR 238          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A1H8LER6_9PROT (Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8LER6_9PROT)

HSP 1 Score: 286 bits (733), Expect = 6.980e-95
Identity = 144/168 (85.71%), Postives = 153/168 (91.07%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            LLVAGGSRGLKAAM R DLRRWLR VAP  RR+GSVCTGAFVLAAAGLLDGKRVATHW+SC+RLA  F  L+VDADSLYVVDGK+WTSAGVTTGIDMALALVEADLGAA+ANLIARHFVLYARRPGYQSQFSP+LQAQ+ AE PF  LIDWMQ +LDQPLDVP LAAR
Sbjct:   79 LLVAGGSRGLKAAMARDDLRRWLRTVAPKARRFGSVCTGAFVLAAAGLLDGKRVATHWASCERLARNFPALDVDADSLYVVDGKIWTSAGVTTGIDMALALVEADLGAAMANLIARHFVLYARRPGYQSQFSPLLQAQTVAEAPFAALIDWMQENLDQPLDVPTLAAR 246          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A521LYD8_9HYPH (GlxA family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LYD8_9HYPH)

HSP 1 Score: 281 bits (719), Expect = 6.120e-93
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            LLVAGGS GLKAAM R D+RRWLRK AP TRR+GSVCTGAF+LAAAGLLDGKRVATHWSSCQRLAER+  L VDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAA ANLIARHFVLYARRPGYQSQFSP+LQAQ+AAE PF  L+DWM  +LD+ LDVPALA R
Sbjct:   67 LLVAGGSAGLKAAMKREDVRRWLRKAAPKTRRFGSVCTGAFMLAAAGLLDGKRVATHWSSCQRLAERYPALTVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAATANLIARHFVLYARRPGYQSQFSPLLQAQTAAEAPFAGLVDWMLDNLDKKLDVPALAGR 234          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A521QZ53_9HYPH (GlxA family transcriptional regulator n=2 Tax=Reyranella TaxID=445219 RepID=A0A521QZ53_9HYPH)

HSP 1 Score: 272 bits (695), Expect = 3.150e-89
Identity = 136/166 (81.93%), Postives = 150/166 (90.36%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALA 498
            LLVAGGSRGLKAA+ R D+  WLRK AP  +R+GSVCTGAF+LAAAGLLDGKRVATHW+SC+RLA+RF  L VDAD+LYVVDGKVWTSAGVTTGIDMALALVEADLGAA ANLIARHFVLYARRPGYQSQFSP+LQAQ+ A+ PF  LIDWMQ +LD+PLDVPALA
Sbjct:   71 LLVAGGSRGLKAALAREDVLAWLRKAAPKAKRFGSVCTGAFMLAAAGLLDGKRVATHWASCERLADRFPALTVDADALYVVDGKVWTSAGVTTGIDMALALVEADLGAAAANLIARHFVLYARRPGYQSQFSPLLQAQTNADAPFAALIDWMQDNLDKPLDVPALA 236          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A1Q3L4U2_9PROT (AraC family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3L4U2_9PROT)

HSP 1 Score: 269 bits (687), Expect = 5.160e-88
Identity = 135/168 (80.36%), Postives = 149/168 (88.69%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            LLVAGGSRGLK  + R D+  WLR+ AP  +R+GSVCTGAFVLAAAGLLDGKRVATHWS+CQRL ERF  L VDA++LYVVDGK+WTSAGVTTGIDMALALVEADLGAA ANLIARHFVLYARRPGYQSQFSP+LQAQ+ A+  F KLIDWMQA+LD+PLDVPALA R
Sbjct:   71 LLVAGGSRGLKVLLERQDVLAWLRQAAPRAKRFGSVCTGAFVLAAAGLLDGKRVATHWSACQRLGERFPALTVDAEALYVVDGKIWTSAGVTTGIDMALALVEADLGAAKANLIARHFVLYARRPGYQSQFSPLLQAQAKADARFAKLIDWMQANLDRPLDVPALAQR 238          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A1T4N5R9_9HYPH (Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4N5R9_9HYPH)

HSP 1 Score: 269 bits (688), Expect = 6.220e-88
Identity = 135/166 (81.33%), Postives = 146/166 (87.95%), Query Frame = 1
Query:    1 LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALA 498
            LLVAGGS+GL   + R D+RRWLR+ AP  RRYGSVCTGAFVLAAAGLLDGKRVATHW+SC RLA R   L VDADSLYVVDG+VWTSAGVTTGIDMALALVEADLGAA ANLIARHFVLYARRPGYQSQFSP+LQAQ+ AE PF +LI+WMQAHLD+ LDVP LA
Sbjct:   80 LLVAGGSKGLPGVIARADVRRWLRRAAPRCRRYGSVCTGAFVLAAAGLLDGKRVATHWASCDRLASRHPELSVDADSLYVVDGQVWTSAGVTTGIDMALALVEADLGAATANLIARHFVLYARRPGYQSQFSPLLQAQTKAEAPFAQLIEWMQAHLDEALDVPTLA 245          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: UPI001FE11C0D (DJ-1/PfpI family protein n=1 Tax=Neorhizobium huautlense TaxID=67774 RepID=UPI001FE11C0D)

HSP 1 Score: 212 bits (539), Expect = 1.800e-66
Identity = 108/169 (63.91%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    1 LLVAGGSRG-LKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            +LVAG   G + AA   P LRRWL + A   RR GSVC G FVLAAAGL++GKRVATHWS+C+ LA  + +L VDAD+LYV+DG VWTSAGVTTGIDMALA++  DLG+AIA+ +A+  VLYARRPGYQSQFSP+L+AQ+ A+ PF  L+ W QA+LD  LDVP LAA+
Sbjct:   62 ILVAGAEAGAVTAAAQTPALRRWLSQSASSVRRIGSVCAGTFVLAAAGLVNGKRVATHWSACEPLARLYPSLTVDADALYVIDGNVWTSAGVTTGIDMALAMISEDLGSAIASRVAKRLVLYARRPGYQSQFSPLLRAQAKADGPFDDLLVWAQANLDAALDVPRLAAK 230          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A0M3B1Z2_9HYPH (AraC family transcriptional regulator n=11 Tax=Hyphomicrobiales TaxID=356 RepID=A0A0M3B1Z2_9HYPH)

HSP 1 Score: 214 bits (545), Expect = 1.890e-66
Identity = 109/169 (64.50%), Postives = 133/169 (78.70%), Query Frame = 1
Query:    1 LLVAGGSRG-LKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            +LVAG   G + AA   P+LR WL + A   RR GSVC G FVLAAAGL+DGKRVATHWS+C+ LA  + +L VDAD+LYVVDG VWTSAGVTTGIDMALA+V  DLG+A+A+ +A+  VLYARRPGYQSQFSP+L+AQ+ A+ PF  L+ W QA+LD  LDVP+LAA+
Sbjct:   75 ILVAGAEAGAVTAATRTPELRWWLSRSASSVRRLGSVCAGTFVLAAAGLVDGKRVATHWSACEPLARLYPSLTVDADALYVVDGNVWTSAGVTTGIDMALAMVSEDLGSALASRVAKRLVLYARRPGYQSQFSPLLRAQAKADGPFADLLVWAQANLDTALDVPSLAAK 243          
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Match: A0A4R3X0P5_9HYPH (AraC family transcriptional regulator with amidase-like domain n=4 Tax=Neorhizobium TaxID=1525371 RepID=A0A4R3X0P5_9HYPH)

HSP 1 Score: 212 bits (539), Expect = 5.430e-66
Identity = 108/169 (63.91%), Postives = 132/169 (78.11%), Query Frame = 1
Query:    1 LLVAGGSRG-LKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLDGKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALALVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLIDWMQAHLDQPLDVPALAAR 504
            +LVAG   G + AA   P LRRWL + A   RR GSVC G FVLAAAGL++GKRVATHWS+C+ LA  + +L VDAD+LYV+DG VWTSAGVTTGIDMALA++  DLG+AIA+ +A+  VLYARRPGYQSQFSP+L+AQ+ A+ PF  L+ W QA+LD  LDVP LAA+
Sbjct:   40 ILVAGAEAGAVTAAAQTPALRRWLSQSASSVRRIGSVCAGTFVLAAAGLVNGKRVATHWSACEPLARLYPSLTVDADALYVIDGNVWTSAGVTTGIDMALAMISEDLGSAIASRVAKRLVLYARRPGYQSQFSPLLRAQAKADGPFDDLLVWAQANLDAALDVPRLAAK 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58667.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521MB97_9HYPH4.800e-10393.45GlxA family transcriptional regulator n=1 Tax=Reyr... [more]
A0A259MVC4_9PROT5.750e-9584.52AraC family transcriptional regulator n=5 Tax=Alph... [more]
A0A1H8LER6_9PROT6.980e-9585.71Transcriptional regulator GlxA family, contains an... [more]
A0A521LYD8_9HYPH6.120e-9385.12GlxA family transcriptional regulator n=1 Tax=Reyr... [more]
A0A521QZ53_9HYPH3.150e-8981.93GlxA family transcriptional regulator n=2 Tax=Reyr... [more]
A0A1Q3L4U2_9PROT5.160e-8880.36AraC family transcriptional regulator n=1 Tax=Alph... [more]
A0A1T4N5R9_9HYPH6.220e-8881.33Transcriptional regulator GlxA family, contains an... [more]
UPI001FE11C0D1.800e-6663.91DJ-1/PfpI family protein n=1 Tax=Neorhizobium huau... [more]
A0A0M3B1Z2_9HYPH1.890e-6664.50AraC family transcriptional regulator n=11 Tax=Hyp... [more]
A0A4R3X0P5_9HYPH5.430e-6663.91AraC family transcriptional regulator with amidase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58667contigP-wetherbeei_contig58667:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000037_gene1199
PFAMsDJ-1_PfpI,HTH_18
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue4.48e-91
EggNOG OGsCOG4977@1|root,COG4977@2|Bacteria,1MUDK@1224|Proteobacteria,2TS7I@28211|Alphaproteobacteria
DescriptionTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
Cds size504
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.9926202-CDS-P-wetherbeei_contig58667:0..5041683186867.9926202-CDS-P-wetherbeei_contig58667:0..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58667 1..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58667.1.1prot_P-wetherbeei_contig58667.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58667 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58667.1.1

>prot_P-wetherbeei_contig58667.1.1 ID=prot_P-wetherbeei_contig58667.1.1|Name=mRNA_P-wetherbeei_contig58667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
LLVAGGSRGLKAAMMRPDLRRWLRKVAPGTRRYGSVCTGAFVLAAAGLLD
GKRVATHWSSCQRLAERFTTLEVDADSLYVVDGKVWTSAGVTTGIDMALA
LVEADLGAAIANLIARHFVLYARRPGYQSQFSPMLQAQSAAETPFVKLID
WMQAHLDQPLDVPALAAR
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mRNA from alignment at P-wetherbeei_contig58667:1..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58667.1.1 ID=mRNA_P-wetherbeei_contig58667.1.1|Name=mRNA_P-wetherbeei_contig58667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58667:1..504- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGTGGCCGGCGGCTCGCGCGGCCTGAAGGCTGCGATGATGCGCCC CGATCTCCGGCGCTGGCTTCGCAAGGTGGCGCCGGGGACCCGGCGCTACG GCTCGGTCTGCACCGGCGCCTTCGTGCTGGCGGCGGCGGGGCTCCTGGAT GGCAAGCGCGTGGCGACGCACTGGTCGAGCTGCCAGCGTCTCGCCGAGCG CTTCACGACACTCGAGGTCGATGCCGACTCGCTCTATGTCGTCGACGGCA AGGTCTGGACCTCGGCCGGAGTCACCACCGGCATCGACATGGCGCTGGCG CTGGTCGAGGCCGATCTTGGTGCGGCCATCGCCAACCTGATCGCGCGGCA CTTCGTGCTCTATGCCCGCCGGCCGGGCTACCAGTCGCAGTTCAGCCCGA TGCTGCAGGCCCAGAGCGCGGCCGAGACGCCGTTCGTGAAGCTGATCGAC TGGATGCAGGCCCATCTCGACCAGCCGCTCGACGTGCCAGCGCTGGCCGC CCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58667:1..504-

>mRNA_P-wetherbeei_contig58667.1.1 ID=mRNA_P-wetherbeei_contig58667.1.1|Name=mRNA_P-wetherbeei_contig58667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58667:1..504- (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGGTGGCCGGCGGCTCGCGCGGCCTGAAGGCTGCGATGATGCGCCC
CGATCTCCGGCGCTGGCTTCGCAAGGTGGCGCCGGGGACCCGGCGCTACG
GCTCGGTCTGCACCGGCGCCTTCGTGCTGGCGGCGGCGGGGCTCCTGGAT
GGCAAGCGCGTGGCGACGCACTGGTCGAGCTGCCAGCGTCTCGCCGAGCG
CTTCACGACACTCGAGGTCGATGCCGACTCGCTCTATGTCGTCGACGGCA
AGGTCTGGACCTCGGCCGGAGTCACCACCGGCATCGACATGGCGCTGGCG
CTGGTCGAGGCCGATCTTGGTGCGGCCATCGCCAACCTGATCGCGCGGCA
CTTCGTGCTCTATGCCCGCCGGCCGGGCTACCAGTCGCAGTTCAGCCCGA
TGCTGCAGGCCCAGAGCGCGGCCGAGACGCCGTTCGTGAAGCTGATCGAC
TGGATGCAGGCCCATCTCGACCAGCCGCTCGACGTGCCAGCGCTGGCCGC
CCGC
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