mRNA_P-wetherbeei_contig58649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58649.1.1
Unique NamemRNA_P-wetherbeei_contig58649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A354UZM4_9PROT (MFS transporter n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354UZM4_9PROT)

HSP 1 Score: 243 bits (620), Expect = 9.490e-77
Identity = 121/165 (73.33%), Postives = 141/165 (85.45%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYGIV 495
            LSV WV  AQG+AG+AKD+TKTA+KSA+KATS G  G+LFRWVAWFTGSKNAMKG+GFF+GG++L+  GFR AL  M   L +VL G+A +LPRTLGKAKASKS +E FAKSR +NLMAAAR+FLFGSRDVWFVVGLP+FLY QGW Y EVAGF+A WTIGYG+V
Sbjct:   98 LSVAWVVTAQGIAGVAKDLTKTASKSAIKATSEGGSGQLFRWVAWFTGSKNAMKGVGFFVGGLLLQTVGFRGALWCMGGLLFVVLAGVAASLPRTLGKAKASKSFREFFAKSRGINLMAAARVFLFGSRDVWFVVGLPVFLYSQGWHYMEVAGFIASWTIGYGLV 262          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A1M3PUX5_9PROT (MFS transporter n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PUX5_9PROT)

HSP 1 Score: 232 bits (592), Expect = 1.320e-72
Identity = 115/165 (69.70%), Postives = 143/165 (86.67%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYGIV 495
            LSV WV  AQGVAG+AKD+TKTAAKSA+KA++    G+LFRWVAWFTGSKNA KG+GFF+GG++L++ GFR AL ++   LL+VL G+   LPR+LGKA++S+S +ELFAKSR VNL+AAAR+F+FG+RDVWFVVGLP+FLYGQGW+Y +VAGFLALWTIGYG V
Sbjct:   95 LSVAWVVAAQGVAGVAKDLTKTAAKSAIKASAQQGAGQLFRWVAWFTGSKNATKGVGFFVGGLLLDHAGFRGALWLLAVLLLVVLAGVLTGLPRSLGKARSSRSFRELFAKSRGVNLLAAARVFMFGARDVWFVVGLPVFLYGQGWRYMQVAGFLALWTIGYGAV 259          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A257PG96_9PROT (MFS transporter n=1 Tax=Rhodospirillales bacterium 20-64-7 TaxID=1970566 RepID=A0A257PG96_9PROT)

HSP 1 Score: 233 bits (594), Expect = 1.380e-72
Identity = 115/162 (70.99%), Postives = 139/162 (85.80%), Query Frame = 1
Query:    4 SVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYG 489
            SV WV IAQG+AG+AKD+TKTA+KSA+KATS    G+LF+WVAWFTGSKNAMKG GFF+GG +L+  GFRPAL +M A L++VL G+ ++LPRTLGKAKASKS +ELFAK+R +NL+AAAR+ LFGSRDVWFVVGLP+FLY  GW+Y  V+GFLA WTIGYG
Sbjct:   99 SVAWVVIAQGIAGVAKDLTKTASKSAIKATSQDGAGQLFKWVAWFTGSKNAMKGFGFFVGGALLQFVGFRPALWLMAAMLVVVLTGVTLSLPRTLGKAKASKSFRELFAKTRPINLLAAARIVLFGSRDVWFVVGLPVFLYANGWKYMAVSGFLAAWTIGYG 260          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: UPI0010BF871E (organoarsenical effux MFS transporter ArsJ n=1 Tax=Roseomonas sp. HF4 TaxID=2562313 RepID=UPI0010BF871E)

HSP 1 Score: 228 bits (582), Expect = 5.120e-71
Identity = 113/165 (68.48%), Postives = 139/165 (84.24%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYGIV 495
            LSV WV +AQG+ G+AKD+TKTA+KSA+K T+   +GRLFRWVA+FTGSKNAMKG GFFLGG++LE  GFR AL  M AALL+VL G+ + LP  +G+A+AS+S +ELFAKSRA+NL+AAAR+FLFG+RDVWFVVGLP+FLY  GW +  V GFLALWTIGYG+V
Sbjct:  103 LSVAWVVVAQGICGVAKDLTKTASKSAIKLTAGAGNGRLFRWVAYFTGSKNAMKGAGFFLGGLLLELLGFRAALWAMAAALLVVLAGVLVALPPMMGRARASRSARELFAKSRAINLLAAARVFLFGARDVWFVVGLPVFLYASGWTFTMVGGFLALWTIGYGVV 267          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A371B7V6_9HYPH (MFS transporter n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B7V6_9HYPH)

HSP 1 Score: 226 bits (576), Expect = 4.090e-70
Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1
Query:    4 SVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYG 489
            SV WV  AQG+AG+AKD+TKTA+KSA+KATSA   G+LFRWVAWFTGSKNAMKG+GFF+GG++LE  GFR AL +M A L ++L+   ++LPRTLGKAK+SKS+KELF KSR VNL+AAAR+F+FG+RDVWFVVGLP+FLY  GW++ EV GFLA WTI YG
Sbjct:   97 SVAWVVAAQGIAGVAKDVTKTASKSAIKATSAEGSGQLFRWVAWFTGSKNAMKGVGFFVGGLLLELVGFRSALWLMAALLAVILVVGLVSLPRTLGKAKSSKSMKELFGKSRGVNLLAAARIFMFGARDVWFVVGLPVFLYASGWRFLEVGGFLAAWTIAYG 258          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: UPI0010C1153D (organoarsenical effux MFS transporter ArsJ n=1 Tax=Roseomonas sp. AR75 TaxID=2562311 RepID=UPI0010C1153D)

HSP 1 Score: 226 bits (576), Expect = 4.800e-70
Identity = 112/165 (67.88%), Postives = 137/165 (83.03%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYGIV 495
            +SV WV  AQGV G+AKD+TKTA+KSA+K T+    GRLFRWVA+FTGSKNAMKG+GFFLGG++LE  GFR AL VM AAL ++L+G+ ++LP  +G+AKAS+S KELFAKSR VNL+A AR FLFG+RDVWFVVGLP+FLY  GW +  V GFLALWTIGYG++
Sbjct:  107 VSVAWVVAAQGVCGVAKDLTKTASKSAIKLTAGDASGRLFRWVAFFTGSKNAMKGVGFFLGGLLLEALGFRGALWVMAAALALILVGVVLSLPPLMGRAKASRSAKELFAKSRGVNLLAVARFFLFGARDVWFVVGLPVFLYASGWTFTMVGGFLALWTIGYGVI 271          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: UPI0016654E46 (organoarsenical effux MFS transporter ArsJ n=1 Tax=Roseomonas lacus TaxID=287609 RepID=UPI0016654E46)

HSP 1 Score: 226 bits (575), Expect = 6.780e-70
Identity = 114/165 (69.09%), Postives = 135/165 (81.82%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYGIV 495
            LSV WV +AQGV G+AKD+TKTA+KSA+K T+ G  GRLF+WVA+FTGSKNAMKGIGFFLGG++LE  GFR AL  M A L IVL G+  TLP  +G+AKAS+S +ELFAKS  VNL+A AR+FLFG+RDVWFVVGLP+FLY  GW +  V GFLALWTIGYGI+
Sbjct:  107 LSVAWVVVAQGVCGVAKDLTKTASKSAIKLTAGGASGRLFKWVAFFTGSKNAMKGIGFFLGGLLLEALGFRGALWAMAAVLAIVLAGVLRTLPPMMGRAKASRSARELFAKSAGVNLLAGARVFLFGARDVWFVVGLPVFLYASGWSFTMVGGFLALWTIGYGII 271          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A849N9M7_9PROT (Organoarsenical effux MFS transporter ArsJ n=1 Tax=Roseicella sp. DB1501 TaxID=2730925 RepID=A0A849N9M7_9PROT)

HSP 1 Score: 225 bits (574), Expect = 8.170e-70
Identity = 113/162 (69.75%), Postives = 136/162 (83.95%), Query Frame = 1
Query:    4 SVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYG 489
            SV WV  AQG+AG+AKD+TKTA+KSA+KA+S    G+LFRWVAWFTGSKNAMKG GFF+GG +L+  GFRPAL +M A L ++L G+A++LPR LGKAKASKS KEL AK+R VNL+A+AR+F+FGSRDVWFVVGLP+FLY QGW Y  VA F+A WTIGYG
Sbjct:  100 SVAWVVAAQGIAGVAKDLTKTASKSAIKASSKEGAGQLFRWVAWFTGSKNAMKGFGFFVGGFLLQVAGFRPALWMMAAMLAVILAGVALSLPRELGKAKASKSFKELLAKNRGVNLLASARIFMFGSRDVWFVVGLPVFLYSQGWHYIGVATFVAAWTIGYG 261          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A537Y0G0_9PROT (Organoarsenical effux MFS transporter ArsJ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537Y0G0_9PROT)

HSP 1 Score: 225 bits (574), Expect = 8.850e-70
Identity = 110/163 (67.48%), Postives = 139/163 (85.28%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYG 489
            +SV WV +AQG+AG+AKD+TKTA+KSA+KATSA   G+LFRWVAWFTGSKNAMKGIGFF+GG++L+  GFRPAL +M A L ++ +   + LPR LGKAK+SK+++ELF KSR VNL+AAAR+F+FG+RDVWFVVGLP+FLYG GW++ +V GFLA WTI YG
Sbjct:   99 MSVAWVVVAQGIAGVAKDVTKTASKSAIKATSAEGSGQLFRWVAWFTGSKNAMKGIGFFIGGLLLDLVGFRPALWMMAALLGVIFVAGLLLLPRQLGKAKSSKTMRELFGKSRGVNLLAAARIFMFGARDVWFVVGLPVFLYGYGWKFLQVGGFLAAWTIAYG 261          
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Match: A0A4R5QGH4_9PROT (Organoarsenical effux MFS transporter ArsJ n=6 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R5QGH4_9PROT)

HSP 1 Score: 225 bits (573), Expect = 1.120e-69
Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 1
Query:    1 LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSKNAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAKASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYREVAGFLALWTIGYG 489
            +SV WV  AQGV+G+AKD+TKTA+KSA+KATS    G+LFRWVAWFTGSKNAMKG GFF+GG +L+  GFRPAL +++A L  VL  + ++LPR LGKAKASKS KEL AKSR VNL+A AR+F+FGSRDVWFVVGLP+FLYGQGW Y  V+ FLA WTIGYG
Sbjct:   98 MSVAWVVAAQGVSGVAKDLTKTASKSAIKATSQQGAGQLFRWVAWFTGSKNAMKGFGFFVGGALLQFVGFRPALWLLVALLAAVLTSVLLSLPRELGKAKASKSFKELMAKSRGVNLLAGARIFMFGSRDVWFVVGLPVFLYGQGWHYVGVSTFLAAWTIGYG 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354UZM4_9PROT9.490e-7773.33MFS transporter n=1 Tax=Acetobacteraceae bacterium... [more]
A0A1M3PUX5_9PROT1.320e-7269.70MFS transporter n=1 Tax=Rhodospirillales bacterium... [more]
A0A257PG96_9PROT1.380e-7270.99MFS transporter n=1 Tax=Rhodospirillales bacterium... [more]
UPI0010BF871E5.120e-7168.48organoarsenical effux MFS transporter ArsJ n=1 Tax... [more]
A0A371B7V6_9HYPH4.090e-7069.75MFS transporter n=2 Tax=unclassified Pseudolabrys ... [more]
UPI0010C1153D4.800e-7067.88organoarsenical effux MFS transporter ArsJ n=1 Tax... [more]
UPI0016654E466.780e-7069.09organoarsenical effux MFS transporter ArsJ n=1 Tax... [more]
A0A849N9M7_9PROT8.170e-7069.75Organoarsenical effux MFS transporter ArsJ n=1 Tax... [more]
A0A537Y0G0_9PROT8.850e-7067.48Organoarsenical effux MFS transporter ArsJ n=1 Tax... [more]
A0A4R5QGH4_9PROT1.120e-6969.94Organoarsenical effux MFS transporter ArsJ n=6 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58649contigP-wetherbeei_contig58649:9..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121106.JQKB01000093_gene1812
PFAMsMFS_1
Model size495
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.6e-70
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1MV8D@1224|Proteobacteria,2TT4B@28211|Alphaproteobacteria,2JRE0@204441|Rhodospirillales
DescriptionCOG0477 Permeases of the major facilitator superfamily
Cds size495
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.8000033-CDS-P-wetherbeei_contig58649:8..5031683186867.8000033-CDS-P-wetherbeei_contig58649:8..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58649 9..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58649.1.1prot_P-wetherbeei_contig58649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58649 9..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58649.1.1

>prot_P-wetherbeei_contig58649.1.1 ID=prot_P-wetherbeei_contig58649.1.1|Name=mRNA_P-wetherbeei_contig58649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
LSVVWVAIAQGVAGIAKDITKTAAKSALKATSAGEHGRLFRWVAWFTGSK
NAMKGIGFFLGGVMLENFGFRPALAVMMAALLIVLLGIAMTLPRTLGKAK
ASKSIKELFAKSRAVNLMAAARMFLFGSRDVWFVVGLPLFLYGQGWQYRE
VAGFLALWTIGYGIV
back to top

mRNA from alignment at P-wetherbeei_contig58649:9..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58649.1.1 ID=mRNA_P-wetherbeei_contig58649.1.1|Name=mRNA_P-wetherbeei_contig58649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58649:9..503+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCGTAGTGTGGGTCGCCATCGCGCAAGGCGTCGCCGGCATCGCCAA AGACATCACCAAGACCGCTGCCAAGTCCGCCTTGAAAGCCACCTCGGCAG GCGAGCACGGCCGACTCTTTCGCTGGGTGGCCTGGTTCACCGGCTCGAAG AACGCGATGAAGGGTATCGGCTTCTTCCTGGGCGGTGTGATGCTGGAGAA TTTTGGCTTTCGGCCAGCGCTCGCCGTGATGATGGCGGCGCTTCTCATCG TGCTGCTTGGCATTGCAATGACGCTACCCCGCACGCTAGGCAAGGCCAAG GCCTCCAAGTCAATCAAAGAACTGTTCGCCAAATCGCGAGCGGTGAATCT GATGGCTGCGGCGAGAATGTTCTTGTTCGGCTCGCGCGACGTGTGGTTCG TGGTGGGTCTGCCCTTGTTCCTTTATGGGCAGGGCTGGCAGTATCGGGAG GTCGCCGGCTTTCTCGCGCTATGGACTATCGGTTACGGCATCGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58649:9..503+

>mRNA_P-wetherbeei_contig58649.1.1 ID=mRNA_P-wetherbeei_contig58649.1.1|Name=mRNA_P-wetherbeei_contig58649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58649:9..503+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCGTAGTGTGGGTCGCCATCGCGCAAGGCGTCGCCGGCATCGCCAA
AGACATCACCAAGACCGCTGCCAAGTCCGCCTTGAAAGCCACCTCGGCAG
GCGAGCACGGCCGACTCTTTCGCTGGGTGGCCTGGTTCACCGGCTCGAAG
AACGCGATGAAGGGTATCGGCTTCTTCCTGGGCGGTGTGATGCTGGAGAA
TTTTGGCTTTCGGCCAGCGCTCGCCGTGATGATGGCGGCGCTTCTCATCG
TGCTGCTTGGCATTGCAATGACGCTACCCCGCACGCTAGGCAAGGCCAAG
GCCTCCAAGTCAATCAAAGAACTGTTCGCCAAATCGCGAGCGGTGAATCT
GATGGCTGCGGCGAGAATGTTCTTGTTCGGCTCGCGCGACGTGTGGTTCG
TGGTGGGTCTGCCCTTGTTCCTTTATGGGCAGGGCTGGCAGTATCGGGAG
GTCGCCGGCTTTCTCGCGCTATGGACTATCGGTTACGGCATCGTC
back to top