mRNA_P-wetherbeei_contig58619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58619.1.1
Unique NamemRNA_P-wetherbeei_contig58619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: A0A495RGP1_SPHMI (Carbon-monoxide dehydrogenase medium subunit n=1 Tax=Sphingosinicella microcystinivorans TaxID=335406 RepID=A0A495RGP1_SPHMI)

HSP 1 Score: 263 bits (671), Expect = 1.420e-86
Identity = 134/162 (82.72%), Postives = 144/162 (88.89%), Query Frame = 1
Query:    1 EGSRVRVGAGVTLAALARHPAAAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGRAVVAVACERVGEAMRYTVSGLVDRPVRSGPIPDDPGPWLDDLL 486
            EG R RVGAGVTLAALARHP  AGGFA+AIG+VGNVTIRNRATVGG LAWADPRGEL LVLLALG  VVTDRRE+A+EDF+TGP  TVLEPGE I+AATFE+GR +AFEELLVRNSTGRAVVA ACERVGEAMRYTVSGLVDRPVRS P+ DDP  WL DL+
Sbjct:   63 EGKRARVGAGVTLAALARHPTVAGGFADAIGYVGNVTIRNRATVGGCLAWADPRGELPLVLLALGGTVVTDRREVAMEDFVTGPSCTVLEPGEVILAATFESGRKLAFEELLVRNSTGRAVVAAACERVGEAMRYTVSGLVDRPVRSAPMADDPDAWLGDLM 224          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: A0A1T5CYM2_9SPHN (Carbon-monoxide dehydrogenase medium subunit n=3 Tax=Rhizorhabdus TaxID=1649486 RepID=A0A1T5CYM2_9SPHN)

HSP 1 Score: 106 bits (265), Expect = 3.760e-25
Identity = 66/144 (45.83%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   19 VGAGVTLAALARHPAAA--GGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAG---RTIAFEELLVRNSTGRAVVAVACERVGEAMRYTVSGLVDRPV 435
            +GAG   + L R P A      AEA+  VG  TIRNRAT+GG++AWADPR E  +VL+  GA V TDRR I +     GPF T L   E I+  T         + F ELL R+S G+AVV+VA    G+A+ + ++GL+DRPV
Sbjct:   77 IGAGNRFSDLLRGPVAGLLPALAEALRHVGTTTIRNRATLGGNIAWADPRAEAPMVLMLHGATVRTDRRAIPMATLPVGPFKTRLARDEVILGVTVPRRPDPAAMRFAELLDRHSAGKAVVSVAVRPAGDAIDFAIAGLLDRPV 220          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: A0A1G7BIN4_9PROT (Carbon-monoxide dehydrogenase medium subunit n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7BIN4_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 1.340e-19
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 EGSRVRVGAGVTLAALARHPA---AAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRN-STGRAVVAVACERVGEAMRYTVSG 417
            EG  V +GAG T A +A  P    A    A+  G +G+  +RNR T+GGS+A ADP  +    +L LGA V TDRR I+ +D+  G F T LE GE + A +F      A+    VRN ++G AV  V   RVG+ +R  V+G
Sbjct:   62 EGDAVIIGAGTTHADVAASPLVREALPALADLAGLIGDPQVRNRGTLGGSVANADPSADYPAAVLGLGATVHTDRRAISADDYFLGLFTTALEGGELVTAVSFAVAEVAAYRS--VRNPASGYAVAGVFVARVGQGVRVAVTG 202          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: B6ISQ7_RHOCS (Carbon monoxide dehydrogenase medium chain n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6ISQ7_RHOCS)

HSP 1 Score: 90.9 bits (224), Expect = 3.300e-19
Identity = 62/143 (43.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 EGSRVRVGAGVTLAALARHP---AAAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGR-AVVAVACERVGEAMRYTVSG 417
            EG  V +GAG T   +   P   A     AE  G +G+  +RNR T+GGS+A +DP  +    LLALGA V TDRREIA  DF TG F T LEPGE +VA  F       + +   RN   R AVV V     G+ +R  V+G
Sbjct:   63 EGDGVSIGAGTTHHEVQFDPTVTATIPALAELAGLIGDPQVRNRGTLGGSIANSDPAADYPAALLALGATVRTDRREIAARDFFTGLFETALEPGEIVVAVHFPRPERAKYTKF--RNPASRYAVVGVFVAVSGDGVRVAVTG 203          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: UPI0016666BEF (xanthine dehydrogenase family protein subunit M n=1 Tax=Aureimonas endophytica TaxID=2027858 RepID=UPI0016666BEF)

HSP 1 Score: 90.5 bits (223), Expect = 4.860e-19
Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    1 EGSRVRVGAGVTLAALARHPA---AAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGR-AVVAVACERVGEAMRYTVSG 417
            EG +VR+G G+T A +A   A    A GF E  G +G+  +R+  T+GGS+A  DP  +    LLA+GA + TD+REIA EDF  G F T LE  E +   +FEA    A+E+   RN   R A+  V   R G   R  V+G
Sbjct:   64 EGRQVRIGGGITHAEIAASEAIGAVAHGFRELAGLIGDPAVRHMGTIGGSVANFDPAADYPAALLAMGATIRTDKREIAAEDFFLGLFETALEENEIVTGVSFEAPEASAYEKF--RNPASRYAMCGVFVARRGGEARVGVTG 204          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: A0A3F2U5A5_9HYPH (Xanthine dehydrogenase family protein subunit M n=1 Tax=Mesorhizobium sp. YM1C-6-2 TaxID=1827501 RepID=A0A3F2U5A5_9HYPH)

HSP 1 Score: 90.1 bits (222), Expect = 6.580e-19
Identity = 61/142 (42.96%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    4 GSRVRVGAGVT---LAALARHPAAAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGR-AVVAVACERVGEAMRYTVSG 417
            G  V +GA  T   +A+ A     A   AE  G +G+  +R+R T+GGS+A  DP  +    LLALGA VVT+ REIA +DF TG F T LE GE I A  FEA    A+E+   RN   R A+  V   R G  +R  V+G
Sbjct:   63 GRTVTIGAATTHAEVASSAELKKTAPAVAELAGMIGDPHVRHRGTIGGSVANNDPAADYPSALLALGATVVTNSREIAADDFFTGLFETALEDGEIITAIRFEAPEKAAYEKF--RNPASRYAIAGVFVARTGSGVRVAVTG 202          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: UPI0018D3F427 (FAD binding domain-containing protein n=1 Tax=Xinfangfangia soli TaxID=2185115 RepID=UPI0018D3F427)

HSP 1 Score: 89.0 bits (219), Expect = 2.050e-18
Identity = 66/151 (43.71%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   13 VRVGAGVTLAALARHPAAAGG---FAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVT----DRREIAVEDFITGPFLTVLEPGEAIVAATFE---AGRTIAFEELLVRNSTGRAVVAVACERVGEAMRYTVSGLVDRPV 435
            V VGA V  A LA H  A       AEA+  VG++  RNR TV GSLA ADP  EL L+L+ LG  V       RR +A EDF+TG   T   P E IV+A F    AG   AF E+  R+    A+V++AC   G  +R  V G+ D PV
Sbjct:   70 VTVGATVRQAELAAHAEAREAVPLLAEALSHVGHIQTRNRGTVCGSLAHADPSAELPLMLVLLGGSVTLASAQGRRTVAAEDFLTGTLTTSRRPDEMIVSAHFPRPPAGAKTAFREIARRHGDF-AIVSLACIAQGRNLRLAVGGVADAPV 219          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: A0A2U2DP38_9HYPH (Carbon monoxide dehydrogenase n=1 Tax=Rhizobium album TaxID=2182425 RepID=A0A2U2DP38_9HYPH)

HSP 1 Score: 88.6 bits (218), Expect = 2.560e-18
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    1 EGSRVRVGAGVTLAALARHPA---AAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGR-AVVAVACERVGEAMRYTVSG 417
            +GSRVR+GA    A +A   A   A        G +G+  +R+  T+GGS+A  DP  +   + LALGA +VTDRREIA +DF TG F T LEPGE + A TF+      + +   RN   R A+  V   R G ++R  V+G
Sbjct:   63 DGSRVRIGAATPHAEVAASSALRSACPAVTVLAGLIGDPHVRHMGTIGGSIANNDPAADYPALALALGATIVTDRREIAADDFFTGLFETALEPGELVTAITFDLPEKAGYAKF--RNPASRYAMTGVFVARRGGSVRVAVTG 203          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: H0HSN5_9HYPH (Molybdopterin dehydrogenase FAD-binding protein n=2 Tax=Mesorhizobium TaxID=68287 RepID=H0HSN5_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 4.990e-18
Identity = 61/145 (42.07%), Postives = 78/145 (53.79%), Query Frame = 1
Query:    4 GSRVRVGAGVT---LAALARHPAAAGGFAEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRTIAFEELLVRNSTGR-AVVAVACERVGEAMRYTVSGLVD 426
            GS V +GAG T   +AA A   AA    +   G +G+  +R+  T+GGS+A  DP  +    LLAL A +VTDRREIA +DF TG F T LE GE I A  F A    A+E+   RN   R A+V V        +R  V+G  D
Sbjct:   63 GSAVTIGAGTTHAEVAADAGLKAACPALSRLAGMIGDPHVRHMGTIGGSIANNDPAADYPAALLALAATIVTDRREIAADDFFTGQFETALEEGEIIAAVRFTAPAKAAYEKF--RNPASRYAIVGVFVATGDSGVRAAVTGAGD 205          
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Match: UPI001F29C8C3 (xanthine dehydrogenase family protein subunit M n=1 Tax=Kibdelosporangium philippinense TaxID=211113 RepID=UPI001F29C8C3)

HSP 1 Score: 87.4 bits (215), Expect = 8.670e-18
Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   79 AEAIGFVGNVTIRNRATVGGSLAWADPRGELSLVLLALGAIV----VTDRREIAVEDFITGPFLTVLEPGEAIVAATFEAGRT-IAFEELLVRNSTGRAVVAVAC----ERVGEAMRYTVSGLVDRPVRS 441
            AEA+G VG+V+IRNR T+GGSLA ADP  EL  V +AL A V    +   R+IA  DF  GP  T LEPGE +V+ +F      I+ +EL  R      VVAVA     +RV    R  V G+   P+R+
Sbjct:   93 AEALGHVGHVSIRNRGTIGGSLAHADPAAELPTVAVALDASVQAQGIHGTRDIAAGDFFLGPHQTALEPGELLVSVSFPVSAAGISVQELSFRGRDLALVVAVAAITVEDRVCSQARIAVGGVGPTPIRA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A495RGP1_SPHMI1.420e-8682.72Carbon-monoxide dehydrogenase medium subunit n=1 T... [more]
A0A1T5CYM2_9SPHN3.760e-2545.83Carbon-monoxide dehydrogenase medium subunit n=3 T... [more]
A0A1G7BIN4_9PROT1.340e-1941.26Carbon-monoxide dehydrogenase medium subunit n=1 T... [more]
B6ISQ7_RHOCS3.300e-1943.36Carbon monoxide dehydrogenase medium chain n=1 Tax... [more]
UPI0016666BEF4.860e-1941.26xanthine dehydrogenase family protein subunit M n=... [more]
A0A3F2U5A5_9HYPH6.580e-1942.96Xanthine dehydrogenase family protein subunit M n=... [more]
UPI0018D3F4272.050e-1843.71FAD binding domain-containing protein n=1 Tax=Xinf... [more]
A0A2U2DP38_9HYPH2.560e-1840.56Carbon monoxide dehydrogenase n=1 Tax=Rhizobium al... [more]
H0HSN5_9HYPH4.990e-1842.07Molybdopterin dehydrogenase FAD-binding protein n=... [more]
UPI001F29C8C38.670e-1844.62xanthine dehydrogenase family protein subunit M n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58619contigP-wetherbeei_contig58619:5..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog392499.Swit_0842
PFAMsFAD_binding_5
Model size486
Max annot lvl204457|Sphingomonadales
KEGG rclassRC02800
KEGG koko:K03519
KEGG ReactionR11168
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.46e-27
EggNOG OGsCOG1319@1|root,COG1319@2|Bacteria,1MUDB@1224|Proteobacteria,2TRA8@28211|Alphaproteobacteria,2K7G1@204457|Sphingomonadales
EC1.2.5.3
DescriptionFAD binding domain in molybdopterin dehydrogenase
Cds size486
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.6796756-CDS-P-wetherbeei_contig58619:4..4901683186867.6796756-CDS-P-wetherbeei_contig58619:4..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58619 5..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58619.1.1prot_P-wetherbeei_contig58619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58619 5..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58619.1.1

>prot_P-wetherbeei_contig58619.1.1 ID=prot_P-wetherbeei_contig58619.1.1|Name=mRNA_P-wetherbeei_contig58619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
EGSRVRVGAGVTLAALARHPAAAGGFAEAIGFVGNVTIRNRATVGGSLAW
ADPRGELSLVLLALGAIVVTDRREIAVEDFITGPFLTVLEPGEAIVAATF
EAGRTIAFEELLVRNSTGRAVVAVACERVGEAMRYTVSGLVDRPVRSGPI
PDDPGPWLDDLL
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mRNA from alignment at P-wetherbeei_contig58619:5..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58619.1.1 ID=mRNA_P-wetherbeei_contig58619.1.1|Name=mRNA_P-wetherbeei_contig58619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig58619:5..490- (Phaeothamnion wetherbeei SAG_119_79)
GAAGGAAGCCGTGTGCGGGTCGGTGCGGGCGTCACGCTCGCTGCGCTCGC ACGGCATCCCGCCGCCGCCGGCGGCTTTGCCGAGGCGATCGGTTTCGTCG GCAACGTCACCATCCGCAACCGCGCCACGGTCGGCGGCAGCCTCGCGTGG GCCGACCCGCGCGGCGAGCTGTCGCTCGTTCTGCTTGCGCTTGGCGCGAT CGTGGTGACCGACAGGCGCGAGATCGCCGTGGAAGATTTCATCACAGGTC CGTTTCTGACCGTCCTCGAACCCGGTGAAGCGATCGTGGCCGCGACGTTC GAAGCCGGGCGGACCATCGCCTTCGAAGAATTGCTGGTACGCAATTCGAC CGGACGCGCCGTGGTGGCGGTGGCCTGCGAACGGGTGGGGGAGGCGATGC GCTACACGGTTTCCGGCCTCGTCGATCGCCCGGTCAGGAGCGGGCCGATC CCAGACGACCCCGGCCCGTGGCTCGATGATCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58619:5..490-

>mRNA_P-wetherbeei_contig58619.1.1 ID=mRNA_P-wetherbeei_contig58619.1.1|Name=mRNA_P-wetherbeei_contig58619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig58619:5..490- (Phaeothamnion wetherbeei SAG_119_79)
GAAGGAAGCCGTGTGCGGGTCGGTGCGGGCGTCACGCTCGCTGCGCTCGC
ACGGCATCCCGCCGCCGCCGGCGGCTTTGCCGAGGCGATCGGTTTCGTCG
GCAACGTCACCATCCGCAACCGCGCCACGGTCGGCGGCAGCCTCGCGTGG
GCCGACCCGCGCGGCGAGCTGTCGCTCGTTCTGCTTGCGCTTGGCGCGAT
CGTGGTGACCGACAGGCGCGAGATCGCCGTGGAAGATTTCATCACAGGTC
CGTTTCTGACCGTCCTCGAACCCGGTGAAGCGATCGTGGCCGCGACGTTC
GAAGCCGGGCGGACCATCGCCTTCGAAGAATTGCTGGTACGCAATTCGAC
CGGACGCGCCGTGGTGGCGGTGGCCTGCGAACGGGTGGGGGAGGCGATGC
GCTACACGGTTTCCGGCCTCGTCGATCGCCCGGTCAGGAGCGGGCCGATC
CCAGACGACCCCGGCCCGTGGCTCGATGATCTGCTG
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