mRNA_P-wetherbeei_contig58580.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58580.1.1
Unique NamemRNA_P-wetherbeei_contig58580.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A3D5DF34_9GAMM (NADH-quinone oxidoreductase subunit I n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DF34_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 8.170e-44
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 1
Query:   10 VVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            +V+Y KSLTLWEL+KGL+LTG +LF+RKIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES
Sbjct:    3 IVNYLKSLTLWELVKGLRLTGRHLFERKITVQYPEEKTPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 81          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A7C5XTP8_9GAMM (NADH-quinone oxidoreductase subunit NuoI (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XTP8_9GAMM)

HSP 1 Score: 142 bits (357), Expect = 1.600e-42
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M  ++DY +S  LWELL GL+LTG YLF RKIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCE VCPALAITIES
Sbjct:    1 MRALLDYVRSFLLWELLMGLRLTGKYLFARKITVQYPEEKTPQSPRFRGLHALRRYPNGEERCIACKLCEVVCPALAITIES 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A6L8EGN7_9GAMM (NADH-quinone oxidoreductase subunit I n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EGN7_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 2.790e-42
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M  + DYF++  LWEL+KGL+LTG YLF RKIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCEAVCPA+AITIES
Sbjct:    1 MMKIKDYFRTFLLWELVKGLRLTGRYLFRRKITVQYPEEKTPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPAVAITIES 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A1S9CY20_9GAMM (NADH-quinone oxidoreductase subunit I n=1 Tax=Chromatiales bacterium USCg_Taylor TaxID=1934255 RepID=A0A1S9CY20_9GAMM)

HSP 1 Score: 142 bits (358), Expect = 1.130e-41
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M  V DYF+SL L ELLKG+KLTG YLF RKIT+QYPEEKTPQS RFRG HALRRYPNGEERCIACKLCEAVCPA+AITIES
Sbjct:    1 MPAVKDYFRSLLLGELLKGMKLTGRYLFSRKITVQYPEEKTPQSPRFRGHHALRRYPNGEERCIACKLCEAVCPAVAITIES 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A7C1U056_9GAMM (NADH-quinone oxidoreductase subunit I n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C1U056_9GAMM)

HSP 1 Score: 142 bits (357), Expect = 1.610e-41
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M ++  +FKSL LWELLKGL+LTG YLF RKIT+QYP+E+TPQS RFRGLHALRRYPNGEERCIACKLCEA CPALAITIE+
Sbjct:    1 MKLIKHWFKSLLLWELLKGLRLTGKYLFARKITVQYPDERTPQSPRFRGLHALRRYPNGEERCIACKLCEATCPALAITIEA 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A849MFP1_9PROT (NADH-quinone oxidoreductase subunit I n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A849MFP1_9PROT)

HSP 1 Score: 141 bits (356), Expect = 2.350e-41
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1
Query:   10 VVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            V +Y +SL LWELLKGL+LTG YLF RKIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCEAVCPA+AITIES
Sbjct:    5 VKNYIQSLFLWELLKGLQLTGRYLFKRKITVQYPEEKTPQSHRFRGLHALRRYPNGEERCIACKLCEAVCPAVAITIES 83          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A1Z4VRJ4_9GAMM (NADH-quinone oxidoreductase subunit I n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z4VRJ4_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 3.240e-41
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M  +  Y KSL LWELL GL+LTG YLF RKIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIE+
Sbjct:    1 MQALKHYVKSLFLWELLMGLRLTGRYLFARKITVQYPEEKTPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIEA 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A4R1HEP2_9GAMM (NADH-quinone oxidoreductase subunit I n=2 Tax=root TaxID=1 RepID=A0A4R1HEP2_9GAMM)

HSP 1 Score: 140 bits (353), Expect = 6.710e-41
Identity = 67/82 (81.71%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M  +  Y KSL LWELLKG++LTG YLF +KIT+QYPEEKTPQS RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIE+
Sbjct:    1 MLALKHYVKSLLLWELLKGMQLTGKYLFAKKITVQYPEEKTPQSYRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIEA 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: A0A0A0BFT1_9GAMM (NADH-quinone oxidoreductase subunit I n=3 Tax=Methylophaga TaxID=40222 RepID=A0A0A0BFT1_9GAMM)

HSP 1 Score: 140 bits (352), Expect = 9.240e-41
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M+ +  +FKS  LWELLKG+KLTG YLF RK+T+QYPEEKTPQS RFRGLHALRRYPNGEERCI CKLCEAVCPALAITI++
Sbjct:    1 MNQLRHFFKSFLLWELLKGMKLTGKYLFARKVTVQYPEEKTPQSPRFRGLHALRRYPNGEERCIGCKLCEAVCPALAITIDT 82          
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Match: I3CGL7_9GAMM (NADH-quinone oxidoreductase subunit I n=2 Tax=Beggiatoa TaxID=1021 RepID=I3CGL7_9GAMM)

HSP 1 Score: 140 bits (352), Expect = 9.240e-41
Identity = 65/82 (79.27%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITIES 246
            M+  ++Y KSL LWEL+KG++LTG YLFDRKIT+QYP+EKTP S RFRGLHALRRYPNGEERCIACKLCEAVCPA+AITI+S
Sbjct:    1 MNRALNYLKSLFLWELVKGMQLTGRYLFDRKITVQYPDEKTPLSHRFRGLHALRRYPNGEERCIACKLCEAVCPAVAITIDS 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58580.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DF34_9GAMM8.170e-4487.34NADH-quinone oxidoreductase subunit I n=1 Tax=Gamm... [more]
A0A7C5XTP8_9GAMM1.600e-4281.71NADH-quinone oxidoreductase subunit NuoI (Fragment... [more]
A0A6L8EGN7_9GAMM2.790e-4281.71NADH-quinone oxidoreductase subunit I n=1 Tax=Gamm... [more]
A0A1S9CY20_9GAMM1.130e-4184.15NADH-quinone oxidoreductase subunit I n=1 Tax=Chro... [more]
A0A7C1U056_9GAMM1.610e-4180.49NADH-quinone oxidoreductase subunit I n=1 Tax=Thio... [more]
A0A849MFP1_9PROT2.350e-4186.08NADH-quinone oxidoreductase subunit I n=2 Tax=Prot... [more]
A0A1Z4VRJ4_9GAMM3.240e-4182.93NADH-quinone oxidoreductase subunit I n=4 Tax=Gamm... [more]
A0A4R1HEP2_9GAMM6.710e-4181.71NADH-quinone oxidoreductase subunit I n=2 Tax=root... [more]
A0A0A0BFT1_9GAMM9.240e-4179.27NADH-quinone oxidoreductase subunit I n=3 Tax=Meth... [more]
I3CGL7_9GAMM9.240e-4179.27NADH-quinone oxidoreductase subunit I n=2 Tax=Begg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58580contigP-wetherbeei_contig58580:258..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1286106.MPL1_06285
Preferred namenuoI
PFAMsFer4
Model size246
Max annot lvl72273|Thiotrichales
KEGG rclassRC00061
KEGG koko:K00338
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.53e-42
EggNOG OGsCOG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,1RN32@1236|Gammaproteobacteria,460DI@72273|Thiotrichales
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size246
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186867.1945753-CDS-P-wetherbeei_contig58580:257..5031683186867.1945753-CDS-P-wetherbeei_contig58580:257..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58580 258..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58580.1.1prot_P-wetherbeei_contig58580.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58580 258..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58580.1.1

>prot_P-wetherbeei_contig58580.1.1 ID=prot_P-wetherbeei_contig58580.1.1|Name=mRNA_P-wetherbeei_contig58580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MSVVVDYFKSLTLWELLKGLKLTGAYLFDRKITIQYPEEKTPQSARFRGL
HALRRYPNGEERCIACKLCEAVCPALAITIES
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mRNA from alignment at P-wetherbeei_contig58580:258..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58580.1.1 ID=mRNA_P-wetherbeei_contig58580.1.1|Name=mRNA_P-wetherbeei_contig58580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig58580:258..503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGTAGTTGTCGATTACTTCAAGAGTCTGACCCTGTGGGAGCTGCT CAAAGGTTTGAAGCTCACCGGTGCTTACCTGTTCGATCGCAAGATCACCA TCCAGTACCCCGAAGAGAAGACCCCGCAGTCGGCGCGCTTCCGCGGCCTG CATGCGTTGCGTCGTTATCCGAATGGCGAAGAGCGCTGCATTGCCTGCAA GCTCTGCGAGGCGGTATGCCCGGCACTCGCGATCACCATCGAGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58580:258..503+

>mRNA_P-wetherbeei_contig58580.1.1 ID=mRNA_P-wetherbeei_contig58580.1.1|Name=mRNA_P-wetherbeei_contig58580.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig58580:258..503+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGTAGTTGTCGATTACTTCAAGAGTCTGACCCTGTGGGAGCTGCT
CAAAGGTTTGAAGCTCACCGGTGCTTACCTGTTCGATCGCAAGATCACCA
TCCAGTACCCCGAAGAGAAGACCCCGCAGTCGGCGCGCTTCCGCGGCCTG
CATGCGTTGCGTCGTTATCCGAATGGCGAAGAGCGCTGCATTGCCTGCAA
GCTCTGCGAGGCGGTATGCCCGGCACTCGCGATCACCATCGAGTCC
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