mRNA_P-wetherbeei_contig58570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58570.1.1
Unique NamemRNA_P-wetherbeei_contig58570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58570.1.1 vs. uniprot
Match: UPI001E5AEF14 (ParB/RepB/Spo0J family partition protein n=1 Tax=Streptomyces sp. NR30 TaxID=2886947 RepID=UPI001E5AEF14)

HSP 1 Score: 55.1 bits (131), Expect = 2.190e-6
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   64 IVDGWHRAAAALVNGKRAIAARIDKTPPGADPLEIARRMALEVNTKHGLPLTPGDQLKRGRAILLLPENRDASLRKLEVRYGVSKSTLGRVRQ 342
            ++DG HR  AA + G+R + AR  +   G++  E A  +A+E NTKHGLPLT  D  ++  A+ ++    D S R +  + G++  T+G +R+
Sbjct:    3 VIDGMHRLEAARIRGERTVRARFFE---GSE--EEAFILAVETNTKHGLPLTLAD--RKAAALRIVTARPDLSDRAVAAKVGLAHKTVGAIRR 88
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BLAST of mRNA_P-wetherbeei_contig58570.1.1 vs. uniprot
Match: A0A1H9SY55_9PSEU (Chromosome segregation protein Spo0J, contains ParB-like nuclease domain n=2 Tax=Lentzea xinjiangensis TaxID=402600 RepID=A0A1H9SY55_9PSEU)

HSP 1 Score: 51.6 bits (122), Expect = 4.370e-5
Identity = 40/120 (33.33%), Postives = 61/120 (50.83%), Query Frame = 1 
Query:   10 GDRVPPIDVLCTGVGSFYIVDGWHRAAAALVNGKRAIAARIDKTPPGADPLEIARRMALEVNTKHGLPLTPGDQLKRGRAILLLPENRDASLRKLEVRYGVSKSTLGRVRQELTLEGLQP 369
            G+  PPI V      +  ++DG HR  AAL+ G+ +I   +  T    D    A  +A+E+N KHGLPL+  D++    A  ++  + D S R +    GV  ST+  VR+ +T    QP
Sbjct:   30 GETTPPITV---HRATMRVIDGLHRVRAALLRGRESIEV-VFFTGDERD----AFLLAVELNAKHGLPLSRADRV--AAATRIVASHPDWSDRAIAALTGVGASTVSAVRRRVTAGVTQP 139
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BLAST of mRNA_P-wetherbeei_contig58570.1.1 vs. uniprot
Match: A0A286HSG2_9ACTN (ParB-like nuclease domain-containing protein n=1 Tax=Streptomyces sp. 2323.1 TaxID=1938841 RepID=A0A286HSG2_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 8.110e-5
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   55 SFYIVDGWHRAAAALVNGKRAIAARIDKTPPGADPLEIARRMALEVNTKHGLPLTPGDQLKRGRAILLLPENRDASLRKLEVRYGVSKSTLGRVRQ 342
            S  ++DG HR  AA + G+  + AR  +        E A  +A+E NTKHGLPLT  D  ++  A+ ++  +   S R +  + G++  T+G +R+
Sbjct:   74 SMRVIDGMHRLEAARIRGESTVRARFFE-----GDAEEAFILAVETNTKHGLPLTLAD--RKAAALRIVKAHPHLSDRAVAAKVGLAHKTVGAIRR 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001E5AEF142.190e-635.48ParB/RepB/Spo0J family partition protein n=1 Tax=S... [more]
A0A1H9SY55_9PSEU4.370e-533.33Chromosome segregation protein Spo0J, contains Par... [more]
A0A286HSG2_9ACTN8.110e-532.29ParB-like nuclease domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58570contigP-wetherbeei_contig58570:4..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67332.FM21_32785
PFAMsParBc
Model size384
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.15e-06
EggNOG OGsCOG1475@1|root,COG1475@2|Bacteria,2GNAK@201174|Actinobacteria
DescriptionParB-like nuclease domain
Cds size384
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.9914348-CDS-P-wetherbeei_contig58570:3..3871683186866.9914348-CDS-P-wetherbeei_contig58570:3..387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58570 4..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58570.1.1prot_P-wetherbeei_contig58570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58570 4..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58570.1.1

>prot_P-wetherbeei_contig58570.1.1 ID=prot_P-wetherbeei_contig58570.1.1|Name=mRNA_P-wetherbeei_contig58570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MRRGDRVPPIDVLCTGVGSFYIVDGWHRAAAALVNGKRAIAARIDKTPPG
ADPLEIARRMALEVNTKHGLPLTPGDQLKRGRAILLLPENRDASLRKLEV
RYGVSKSTLGRVRQELTLEGLQPEWHTG
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mRNA from alignment at P-wetherbeei_contig58570:4..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58570.1.1 ID=mRNA_P-wetherbeei_contig58570.1.1|Name=mRNA_P-wetherbeei_contig58570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig58570:4..387+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCGAGGAGATCGCGTCCCGCCTATCGACGTACTCTGCACAGGTGT
TGGAAGTTTCTACATCGTCGACGGATGGCACCGTGCCGCGGCGGCCCTAG
TGAATGGCAAGCGTGCCATAGCAGCGCGAATCGACAAGACGCCCCCCGGA
GCGGACCCGCTCGAGATCGCCCGGCGGATGGCCCTCGAGGTCAACACAAA
GCATGGCCTTCCGCTCACGCCTGGTGATCAACTCAAGCGCGGCCGAGCGA
TCCTCTTGCTCCCGGAGAACCGCGACGCATCCTTGCGCAAGCTCGAGGTT
CGCTATGGCGTCTCGAAAAGTACCCTCGGCAGGGTCCGCCAAGAGTTGAC
CCTTGAGGGGTTACAGCCGGAGTGGCACACGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58570:4..387+

>mRNA_P-wetherbeei_contig58570.1.1 ID=mRNA_P-wetherbeei_contig58570.1.1|Name=mRNA_P-wetherbeei_contig58570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig58570:4..387+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCGAGGAGATCGCGTCCCGCCTATCGACGTACTCTGCACAGGTGT
TGGAAGTTTCTACATCGTCGACGGATGGCACCGTGCCGCGGCGGCCCTAG
TGAATGGCAAGCGTGCCATAGCAGCGCGAATCGACAAGACGCCCCCCGGA
GCGGACCCGCTCGAGATCGCCCGGCGGATGGCCCTCGAGGTCAACACAAA
GCATGGCCTTCCGCTCACGCCTGGTGATCAACTCAAGCGCGGCCGAGCGA
TCCTCTTGCTCCCGGAGAACCGCGACGCATCCTTGCGCAAGCTCGAGGTT
CGCTATGGCGTCTCGAAAAGTACCCTCGGCAGGGTCCGCCAAGAGTTGAC
CCTTGAGGGGTTACAGCCGGAGTGGCACACGGGC
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