mRNA_P-wetherbeei_contig58563.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58563.1.1
Unique NamemRNA_P-wetherbeei_contig58563.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001B8A7D4E (TetR/AcrR family transcriptional regulator n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001B8A7D4E)

HSP 1 Score: 196 bits (497), Expect = 8.270e-62
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1
Query:    1 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRPGGA 297
            AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRP GA
Sbjct:  114 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRPSGA 212          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI00200C9D20 (TetR/AcrR family transcriptional regulator n=2 Tax=unclassified Frankia TaxID=2632575 RepID=UPI00200C9D20)

HSP 1 Score: 55.5 bits (132), Expect = 4.110e-7
Identity = 28/91 (30.77%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALR 276
            ++ +PEG   R   N RR       +A  VP L +     +A+ + ++++  +W  +RD    DG  AGE AA A++LI++G + R +A +
Sbjct:  104 LLLAPEGLLARLSDNDRRRRTARTVVAQEVPGLDETSARRVAAALQALTAAATWQTLRDYWDLDGAEAGETAALALELILDGARARVAAQK 194          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1S1QFC2_9ACTN (HTH tetR-type domain-containing protein n=2 Tax=Frankiaceae TaxID=74712 RepID=A0A1S1QFC2_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    4 VISSPEGREMRTLTNKRR---LEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCS 267
            ++ +PEG   R   N RR     A++D  AP + E+S R    +AS +  +++  +W  +RD    DG  AGEAAA A++L++EG + R +
Sbjct:   87 LLMAPEGLPARLSDNDRRRATARAVVDREAPGLDEVSAR---RVASIVQVLTAAATWQTLRDYWDLDGAEAGEAAALALELLLEGARARAA 174          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001931F505 (TetR/AcrR family transcriptional regulator n=1 Tax=unclassified Frankia TaxID=2632575 RepID=UPI001931F505)

HSP 1 Score: 53.1 bits (126), Expect = 3.170e-6
Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 1
Query:    4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSA 270
            ++ +PEG   R   N RR  A    +    P L +     +A+ +  +++  +W  +RD    DG  AGEAAA A+QL+++G + R  A
Sbjct:  117 LLRAPEGLFARLSDNDRRRRAARGVVDREAPGLDEASARRVAAVVQVLTAAATWQTLRDYWDVDGVEAGEAAALAIQLLLDGARARAQA 205          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001FF4F090 (hypothetical protein n=2 Tax=Rhizobium TaxID=379 RepID=UPI001FF4F090)

HSP 1 Score: 50.8 bits (120), Expect = 5.150e-6
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1
Query:    1 AVISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
            A + S  GR+MR  T   R E+    LAP +  L   D   + +    + S  +W  ++D  G DG +AGEAA++A++LI+
Sbjct:    3 AALHSRTGRQMRMATVPARRESFSAALAPALLSLPTSDARKVEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 83          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: UPI001B27D004 (TetR/AcrR family transcriptional regulator n=1 Tax=Shinella sp. TaxID=1870904 RepID=UPI001B27D004)

HSP 1 Score: 51.2 bits (121), Expect = 1.630e-5
Identity = 24/83 (28.92%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   10 SSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQ 258
            +S  GR+MR   N  R  A    L+ +   +S      + + +  + S  +W  M+D  G  G++AGEAAA+A++++++  +Q
Sbjct:  109 ASGAGRQMRLQANAERQAAFRRSLSAVTTSMSPERARQLEASVQLLFSATAWQTMKDYWGLTGEQAGEAAAWAIRVLLDAARQ 191          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1X0T6K6_9HYPH (TetR family transcriptional regulator n=6 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1X0T6K6_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 2.130e-5
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 AVISSPEGREMR--TLTNKRRLEAMLDF---LAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
            A + S  GREMR  T+ ++RR     DF   LAP + +LS  +R  + +    + S  +W  ++D  G DG +AGEAA++A++LI+
Sbjct:   69 AALHSRTGREMRAGTIADRRR-----DFSVALAPALDKLSHVERQKIEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 149          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A1F3BPC9_9DELT (HTH tetR-type domain-containing protein n=1 Tax=Anaeromyxobacter sp. RBG_16_69_14 TaxID=1797238 RepID=A0A1F3BPC9_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 2.270e-5
Identity = 31/100 (31.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:    4 VISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRA--QRPGGA 297
            ++ +P GR  R      R  A    +    P L +     +A+ +  +++  +W  +RD    DG  A EAAA A++L++EG + R +A RA   RPG A
Sbjct:  104 LLVAPGGRLARLSDKAERQRAFTGVVKHEAPGLGRHAERHVAAALQLLTAAATWQALRDYWDMDGMEAAEAAALAIELLLEGARAR-TARRAPRSRPGAA 202          
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Match: A0A504U5T6_9HYPH (TetR/AcrR family transcriptional regulator n=1 Tax=Rhizobium glycinendophyticum TaxID=2589807 RepID=A0A504U5T6_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 6.220e-5
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    7 ISSPEGREMRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRDNCGYDGKRAGEAAAYAVQLII 243
            I S  GR MR  T   R       LAP + +LS+ +R  + +    + S  +W  ++D  G DG +AGEAA++A++LI+
Sbjct:  112 IHSSTGRAMRAGTIADRRRDFSAALAPALDKLSEAERRKVEALAHLLYSASAWEVLKDYGGLDGTQAGEAASWALELIL 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58563.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001B8A7D4E8.270e-6298.99TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI00200C9D204.110e-730.77TetR/AcrR family transcriptional regulator n=2 Tax... [more]
A0A1S1QFC2_9ACTN2.350e-635.16HTH tetR-type domain-containing protein n=2 Tax=Fr... [more]
UPI001931F5053.170e-631.46TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001FF4F0905.150e-634.57hypothetical protein n=2 Tax=Rhizobium TaxID=379 R... [more]
UPI001B27D0041.630e-528.92TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A1X0T6K6_9HYPH2.130e-537.21TetR family transcriptional regulator n=6 Tax=Hyph... [more]
A0A1F3BPC9_9DELT2.270e-531.00HTH tetR-type domain-containing protein n=1 Tax=An... [more]
A0A504U5T6_9HYPH6.220e-535.44TetR/AcrR family transcriptional regulator n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58563contigP-wetherbeei_contig58563:3..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog298655.KI912266_gene4018
PFAMsTetR_N
Model size300
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000151
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,2GYK7@201174|Actinobacteria,4EVP3@85013|Frankiales
DescriptionBacterial regulatory proteins, tetR family
Cds size270
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.861675-UTR-P-wetherbeei_contig58563:2..321683186866.861675-UTR-P-wetherbeei_contig58563:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58563 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.874895-CDS-P-wetherbeei_contig58563:32..3021683186866.874895-CDS-P-wetherbeei_contig58563:32..302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58563 33..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58563.1.1prot_P-wetherbeei_contig58563.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58563 33..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58563.1.1

>prot_P-wetherbeei_contig58563.1.1 ID=prot_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MRTLTNKRRLEAMLDFLAPLVPELSKRDRHSMASGIVSVSSVLSWMFMRD
NCGYDGKRAGEAAAYAVQLIIEGGQQRCSALRAQRPGGA*
back to top

mRNA from alignment at P-wetherbeei_contig58563:3..302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58563.1.1 ID=mRNA_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig58563:3..302+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTCATTTCCTCGCCCGAGGGACGCGAGATGCGCACCCTGACCAACAA GCGGCGTCTGGAGGCGATGCTGGATTTCCTTGCGCCGCTCGTGCCCGAAC TCTCGAAGAGAGACCGTCACAGCATGGCGTCCGGAATCGTTTCAGTGTCC AGCGTTCTGTCCTGGATGTTCATGCGCGACAATTGCGGTTACGACGGCAA GCGCGCGGGCGAGGCGGCGGCTTATGCCGTGCAACTCATCATCGAGGGCG GACAGCAGCGCTGTTCGGCGCTCCGGGCTCAACGTCCGGGCGGGGCCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58563:3..302+

>mRNA_P-wetherbeei_contig58563.1.1 ID=mRNA_P-wetherbeei_contig58563.1.1|Name=mRNA_P-wetherbeei_contig58563.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig58563:3..302+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCACCCTGACCAACAAGCGGCGTCTGGAGGCGATGCTGGATTTCCT
TGCGCCGCTCGTGCCCGAACTCTCGAAGAGAGACCGTCACAGCATGGCGT
CCGGAATCGTTTCAGTGTCCAGCGTTCTGTCCTGGATGTTCATGCGCGAC
AATTGCGGTTACGACGGCAAGCGCGCGGGCGAGGCGGCGGCTTATGCCGT
GCAACTCATCATCGAGGGCGGACAGCAGCGCTGTTCGGCGCTCCGGGCTC
AACGTCCGGGCGGGGCCTAG
back to top