mRNA_P-wetherbeei_contig58529.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58529.2.1
Unique NamemRNA_P-wetherbeei_contig58529.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58529.2.1 vs. uniprot
Match: A0A0R3MX27_9BRAD (PG_binding_1 domain-containing protein n=8 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MX27_9BRAD)

HSP 1 Score: 53.1 bits (126), Expect = 8.470e-6
Identity = 43/109 (39.45%), Postives = 48/109 (44.04%), Query Frame = 1 
Query:    1 PATPVLSRPSVQLSAGALGIVTLLQAFGIGGLTLPFATGXXXXXXXXXXXXXXXXXXXXXXXXPVATGSTLATXXXXXXXXXXXXXXXXXXXXXGSNLLGSLFSSFGKK 327
            P  P +SRPSVQLSAG LGIVTLLQ+ GI  L LPF  G                        PV+ GST+AT                      S LLG L  +FGKK
Sbjct:  560 PLAPAMSRPSVQLSAGMLGIVTLLQSAGI--LNLPFNLGAIAGQAPTTTA-------------PVS-GSTMATLIPIITGVIGATGGFGALGGIASKLLGGLIGAFGKK 652
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BLAST of mRNA_P-wetherbeei_contig58529.2.1 vs. uniprot
Match: UPI001C020F69 (peptidoglycan-binding protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C020F69)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-5
Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   10 PVLSRPSVQLSAGALGIVTLLQAFGIGGLTLPFATG 117
            P LSRPSVQLSAGALGIVTLLQAFG   L LPF  G
Sbjct:  556 PALSRPSVQLSAGALGIVTLLQAFGF--LNLPFNLG 589
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BLAST of mRNA_P-wetherbeei_contig58529.2.1 vs. uniprot
Match: UPI0006865FAF (peptidoglycan-binding protein n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI0006865FAF)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-5
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 PATPVLSRPSVQLSAGALGIVTLLQAFGIGGLTLPFATG 117
            P TPVLSRPSVQLSAGALGIVT+LQA  +G + LPF  G
Sbjct:  548 PNTPVLSRPSVQLSAGALGIVTILQA--LGKIGLPFNLG 584
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58529.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0R3MX27_9BRAD8.470e-639.45PG_binding_1 domain-containing protein n=8 Tax=Bra... [more]
UPI001C020F691.160e-580.56peptidoglycan-binding protein n=2 Tax=unclassified... [more]
UPI0006865FAF1.570e-574.36peptidoglycan-binding protein n=1 Tax=Bradyrhizobi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58529contigP-wetherbeei_contig58529:173..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038859.AXAU01000005_gene5221
PFAMsPG_binding_1
Model size330
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4e-07
EggNOG OGsCOG3409@1|root,COG3409@2|Bacteria,1RCVN@1224|Proteobacteria,2U6WC@28211|Alphaproteobacteria,3JY33@41294|Bradyrhizobiaceae
DescriptionPutative peptidoglycan binding domain
Cds size330
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.5356405-CDS-P-wetherbeei_contig58529:172..5021683186866.5356405-CDS-P-wetherbeei_contig58529:172..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58529 173..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58529.2.1prot_P-wetherbeei_contig58529.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58529 173..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58529.2.1

>prot_P-wetherbeei_contig58529.2.1 ID=prot_P-wetherbeei_contig58529.2.1|Name=mRNA_P-wetherbeei_contig58529.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
PATPVLSRPSVQLSAGALGIVTLLQAFGIGGLTLPFATGATTAAAATAAT
TAATTVGSVAATTPVATGSTLATLIPLITGIIGATGGFGALGGIGSNLLG
SLFSSFGKK*
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mRNA from alignment at P-wetherbeei_contig58529:173..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58529.2.1 ID=mRNA_P-wetherbeei_contig58529.2.1|Name=mRNA_P-wetherbeei_contig58529.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58529:173..502- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCACGCCGGTGCTGTCGCGGCCGAGCGTGCAGCTTTCGGCCGGCGC
GCTCGGCATCGTCACCTTGCTGCAGGCGTTCGGCATCGGCGGCCTGACTT
TGCCGTTCGCGACGGGCGCGACGACAGCGGCGGCCGCAACAGCGGCCACA
ACAGCAGCTACAACCGTCGGTTCCGTCGCGGCTACCACGCCCGTGGCCAC
AGGCTCCACGCTTGCCACGCTGATCCCGTTGATCACAGGCATCATCGGCG
CCACCGGCGGATTCGGCGCGCTCGGCGGCATCGGCTCCAATTTGCTGGGC
AGCCTGTTCAGTTCGTTCGGGAAGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58529:173..502-

>mRNA_P-wetherbeei_contig58529.2.1 ID=mRNA_P-wetherbeei_contig58529.2.1|Name=mRNA_P-wetherbeei_contig58529.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig58529:173..502- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCACGCCGGTGCTGTCGCGGCCGAGCGTGCAGCTTTCGGCCGGCGC
GCTCGGCATCGTCACCTTGCTGCAGGCGTTCGGCATCGGCGGCCTGACTT
TGCCGTTCGCGACGGGCGCGACGACAGCGGCGGCCGCAACAGCGGCCACA
ACAGCAGCTACAACCGTCGGTTCCGTCGCGGCTACCACGCCCGTGGCCAC
AGGCTCCACGCTTGCCACGCTGATCCCGTTGATCACAGGCATCATCGGCG
CCACCGGCGGATTCGGCGCGCTCGGCGGCATCGGCTCCAATTTGCTGGGC
AGCCTGTTCAGTTCGTTCGGGAAGAAGTGA
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