mRNA_P-wetherbeei_contig58528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58528.1.1
Unique NamemRNA_P-wetherbeei_contig58528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A7Y5CWZ1_HYPSQ (DUF3108 domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CWZ1_HYPSQ)

HSP 1 Score: 149 bits (377), Expect = 1.300e-41
Identity = 75/169 (44.38%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGK-YQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            KLH  G E+ ++ F S  +DGK Y   G +++S   G +K+ G    SG++      P++Y  ++K  SK G V LGF  D V+ VA+ P   P PD VP+K  HL+GVFDP+SS+L ++H  GGNPC+R I +F+GK RF++V++    E+L E KPSGQPT  +VC+
Sbjct:   45 KLHFGGFEVGSYKFQSK-SDGKSYATTGSAEVSALFGAFKWKGGIESSGTLEPKAPRPAAYQLNFKTKSKIGSVTLGFDRDAVKTVALVPSKPPHPDAVPVKPEHLKGVFDPMSSILAMTHAGGGNPCERTIPIFDGKVRFNLVMSAKGEERLKEDKPSGQPTLLKVCK 212          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A2S5MAF0_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MAF0_HYPSQ)

HSP 1 Score: 139 bits (349), Expect = 1.780e-37
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            KL   GL++ ++ F S      Y     +K+S   G +K+ G+   +G    +   P++Y  ++K   K G V+LGF + GV  VA+ P   P  D VP+   HL+ VFDP+S+++ +SH +G NPC +RI +F+GK RFD+V++P  TEK+++K PSGQP    VCR
Sbjct:   40 KLSFNGLDVGSYDFESQFDGKSYVSNSSAKVSAVFGAFKWRGDIQSNGKFIANKPRPANYEMNFKTKKKGGSVKLGFDSSGVSSVALEPNKPPRKDAVPIAADHLKNVFDPMSAIMAMSHAVGPNPCKQRIPIFDGKARFDLVMSPKGTEKISDKSPSGQPRELIVCR 207          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A2P5KSJ5_HYPSQ (Uncharacterized protein n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2P5KSJ5_HYPSQ)

HSP 1 Score: 138 bits (347), Expect = 4.000e-37
Identity = 73/175 (41.71%), Postives = 112/175 (64.00%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNS-----KHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGG--NPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            K++  GL+I +F F S V+   Y L G +K+   MG +++ G  T +G++S  G  PS+Y +D+  ++     K G V++ F   GV  + + P   P PD+VPL  AH + V DPLS+++ +S  LGG  NPC+R+I +F+GKQRFD++L+P R  ++AE +PSGQP+ G VCR
Sbjct:   41 KINFGGLDIGSFRFQSKVSGNTYALTGDAKVRAVMGAFEWKGTTTSAGTVS-IGPKPSNYNFDFNSSAIIGKDKTGTVKMDFKDGGVASLVVVPSKPPPPDMVPLTVAHRQNVLDPLSAVMAMS--LGGTHNPCNRKISIFDGKQRFDLMLSPRRQVRIAEARPSGQPSVGFVCR 212          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A2W4RQZ0_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RQZ0_9PROT)

HSP 1 Score: 135 bits (340), Expect = 4.650e-36
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVC 501
            K++  G+EI +F F S     KY LAG +K+S  +G+ K++G     G+++     PS Y + +K +S  G V + F    V +  + PP  P+   VPL + HL+ VFDP+S++L ++     NPC+R++ VF+GKQRFD+VLT  R E + E +PSG+P    VC
Sbjct:   47 KIYFNGIEIGSFQFESNSDSAKYSLAGRAKLSALLGILKWSGALRSEGTLARGEPLPSDYFFRYKSSSDSGSVTMSFDKRRVAETKLEPPPSPSKSRVPLTEEHLKDVFDPMSAVLAMTTGGLDNPCERKVAVFDGKQRFDIVLTFRRKESIKEAQPSGEPAVAFVC 213          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A6N6SVE2_9HYPH (DUF3108 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SVE2_9HYPH)

HSP 1 Score: 129 bits (325), Expect = 8.360e-34
Identity = 59/163 (36.20%), Postives = 96/163 (58.90%), Query Frame = 1
Query:   16 GLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            G  + TF F S      Y L G++++S  +G + + G     G I      P+++ +D+K ++K G  ++GF    V ++   PP     D +P+++ HL+GV DPLS+++ +S   G NPCDRR+ VF+GK+RFD++L+     K+ E++PSGQP    VCR
Sbjct:   54 GFNVGTFEFQSQAEQQSYTLVGNARLSILLGAFTWDGETRSFGLIVNQAPKPAAFSFDFKSSTKTGSTKIGFSDGAVTEIQHLPPPVAKSDTIPVREQHLKGVLDPLSAIMAISRANGANPCDRRVPVFDGKERFDLLLSYKSEMKVTEQQPSGQPGVAYVCR 216          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A537S949_9PROT (DUF3108 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S949_9PROT)

HSP 1 Score: 128 bits (322), Expect = 2.230e-33
Identity = 57/168 (33.93%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            +++  G  + +F F S      Y L G++ +S  +G + + G+    G I      P+S+ +D+K N + G  ++GF  D V  +   PP   +  ++PL++ HL+GV DPLS++++LS +   +PCDRRI +F+GK+RFD++ +     ++ E+ PSGQP    VCR
Sbjct:   47 EINFNGFTVGSFEFQSQAESQSYTLTGNAHLSVLLGAFSWAGSTRSFGMIVNQAPKPASFSFDFKSNLRAGSTKIGFSDDAVTNIMNVPPMVTSAPIIPLREHHLKGVVDPLSAIMMLSRNTAADPCDRRIAIFDGKERFDLLFSRKGQMRVTEQAPSGQPGVAHVCR 214          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A7C2M1J1_9HYPH (DUF3108 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M1J1_9HYPH)

HSP 1 Score: 127 bits (320), Expect = 4.230e-33
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   16 GLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            G  + TF F S      Y L  ++K+S  +G + + G     G I      P+S+ +D++ N + G  +LGF    V  +   PP  PA D +PL+  HL+GV DPL++++VLS     NPCDRRI +F+GK+RFD++ +     K+ E+ PSGQP    VCR
Sbjct:   49 GFNVGTFEFQSQAERESYTLLANAKLSVLLGAFTWNGETRSFGLIVNQKPKPASFSFDFRSNLRAGSTKLGFADGIVTDIVHLPPPPPAADTIPLRQQHLQGVIDPLTAIMVLSRGASANPCDRRIPIFDGKERFDLLFSYKGEMKVTEQLPSGQPDIAHVCR 211          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A833D368_9HYPH (DUF3108 domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A833D368_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 7.660e-33
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGG-----NPCDRRIGVFEGKQRFDVVLTPHRTEKLAE 462
            +++  GL++ TF FNS V D  YQL G++ +S   G Y++ G    SG     G  P+SY + +K NSK G V + F    V K+   PP   +   VPLK+AHL+GV DPLS++L L+    G     NPC RR+G+F+GKQRFD+ L+  R   + E
Sbjct:   39 RINFNGLDLGTFDFNSRVKDNSYQLTGNANVSALFGAYEWKGLSRASGLALQAGPQPASYYFAFKSNSKAGNVHMTFADTSVAKIVADPPIRSSVAAVPLKEAHLKGVVDPLSAVLALAKPASGRTTGINPCARRVGIFDGKQRFDIALSFKRQASITE 197          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: D8JW78_HYPDA (Uncharacterized protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=D8JW78_HYPDA)

HSP 1 Score: 124 bits (312), Expect = 7.300e-32
Identity = 62/168 (36.90%), Postives = 96/168 (57.14%), Query Frame = 1
Query:    1 KLHMLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            KL   G E+  ++F S  +   Y   G +++S   G +K+TG FTGSGS+   G  P +Y   +K   K   V LGF   GV+ +A+ P   P P+ + +   +L+ VFDP+S+ L +S+  G + C+R I +F+GK RFD+ L+    E + E++PSGQP    +CR
Sbjct:   50 KLTFNGFEVGAYNFTSKYSGETYSATGKTEISALFGAFKWTGTFTGSGSVDKSGPRPVAYQMSYKTKKKLTSVTLGFDPAGVKTIALVPNKPPNPETIKVTPDNLKHVFDPISATLAISNATGSDACNRTIPIFDGKARFDLRLSLKGREAIKEQRPSGQPKELLICR 217          
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Match: A0A2D7FAA5_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FAA5_9HYPH)

HSP 1 Score: 124 bits (311), Expect = 8.420e-32
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   16 GLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGDGVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDAHLRGVFDPLSSLLVLSH-HLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLAEKKPSGQPTAGQVCR 504
            G  I +F+F S V    Y LAG +K+S   G +K+ G    SG    +G  P +Y +D++ NSK G VR+ F    +    + P    +   VPL+  HLR V DP+S+++ L+    G +PC RRI +F+GKQRFD+VL+P   E++ E++PSGQP    VCR
Sbjct:   45 GFRIGSFNFRSDVGGKTYSLAGEAKVSAVFGAFKWRGFTRSSGHAVQNGPLPKNYAFDFQSNSKRGSVRMAFQKKRIIMSEVIPSKPHSNQHVPLQAEHLRNVVDPISAVMALTKVRPGKHPCRRRIPIFDGKQRFDLVLSPAGREQIRERRPSGQPDMAFVCR 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5CWZ1_HYPSQ1.300e-4144.38DUF3108 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A2S5MAF0_HYPSQ1.780e-3739.29Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A2P5KSJ5_HYPSQ4.000e-3741.71Uncharacterized protein n=2 Tax=Hyphomicrobium sp.... [more]
A0A2W4RQZ0_9PROT4.650e-3638.92Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A6N6SVE2_9HYPH8.360e-3436.20DUF3108 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A537S949_9PROT2.230e-3333.93DUF3108 domain-containing protein n=1 Tax=Alphapro... [more]
A0A7C2M1J1_9HYPH4.230e-3338.04DUF3108 domain-containing protein n=1 Tax=Hyphomic... [more]
A0A833D368_9HYPH7.660e-3341.51DUF3108 domain-containing protein n=1 Tax=Hyphomic... [more]
D8JW78_HYPDA7.300e-3236.90Uncharacterized protein n=2 Tax=Hyphomicrobium Tax... [more]
A0A2D7FAA5_9HYPH8.420e-3240.24Uncharacterized protein n=2 Tax=Hyphomicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58528contigP-wetherbeei_contig58528:1..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog670307.HYPDE_38988
PFAMsDUF3108
Model size504
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.54e-34
EggNOG OGsCOG3064@1|root,COG3064@2|Bacteria,1NAWA@1224|Proteobacteria,2TSQY@28211|Alphaproteobacteria,3N7CW@45401|Hyphomicrobiaceae
DescriptionProtein of unknown function (DUF3108)
Cds size495
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.503137-UTR-P-wetherbeei_contig58528:0..91683186866.503137-UTR-P-wetherbeei_contig58528:0..9Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58528 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.512852-CDS-P-wetherbeei_contig58528:9..5041683186866.512852-CDS-P-wetherbeei_contig58528:9..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58528 10..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58528.1.1prot_P-wetherbeei_contig58528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58528 10..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58528.1.1

>prot_P-wetherbeei_contig58528.1.1 ID=prot_P-wetherbeei_contig58528.1.1|Name=mRNA_P-wetherbeei_contig58528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MLGLEIATFHFNSTVTDGKYQLAGHSKMSWAMGLYKYTGNFTGSGSISGD
GVAPSSYVYDWKVNSKHGGVRLGFGADGVEKVAIAPPHEPAPDVVPLKDA
HLRGVFDPLSSLLVLSHHLGGNPCDRRIGVFEGKQRFDVVLTPHRTEKLA
EKKPSGQPTAGQVCR
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mRNA from alignment at P-wetherbeei_contig58528:1..504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58528.1.1 ID=mRNA_P-wetherbeei_contig58528.1.1|Name=mRNA_P-wetherbeei_contig58528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58528:1..504+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGCACATGCTGGGGCTGGAAATCGCCACGTTCCATTTCAATTCGAC CGTCACCGACGGCAAATATCAACTGGCCGGCCACTCCAAGATGTCGTGGG CGATGGGCCTGTACAAATACACCGGCAATTTTACCGGGTCGGGGTCGATC TCCGGCGACGGCGTCGCGCCGTCGAGCTACGTCTACGACTGGAAGGTCAA CAGCAAGCACGGCGGCGTCCGGTTGGGATTTGGCGCCGATGGAGTGGAGA AGGTCGCCATCGCGCCGCCGCACGAACCCGCGCCCGACGTCGTGCCGCTG AAGGATGCCCATCTGCGCGGGGTCTTCGATCCGCTGTCGTCGCTGCTGGT GCTGTCGCACCACCTGGGCGGCAATCCGTGCGACCGCAGGATCGGAGTGT TCGAGGGCAAGCAGCGTTTCGATGTGGTCCTGACGCCACACCGGACCGAG AAACTCGCCGAGAAGAAGCCGAGCGGACAGCCGACCGCCGGGCAGGTGTG CCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58528:1..504+

>mRNA_P-wetherbeei_contig58528.1.1 ID=mRNA_P-wetherbeei_contig58528.1.1|Name=mRNA_P-wetherbeei_contig58528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig58528:1..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGGGCTGGAAATCGCCACGTTCCATTTCAATTCGACCGTCACCGA
CGGCAAATATCAACTGGCCGGCCACTCCAAGATGTCGTGGGCGATGGGCC
TGTACAAATACACCGGCAATTTTACCGGGTCGGGGTCGATCTCCGGCGAC
GGCGTCGCGCCGTCGAGCTACGTCTACGACTGGAAGGTCAACAGCAAGCA
CGGCGGCGTCCGGTTGGGATTTGGCGCCGATGGAGTGGAGAAGGTCGCCA
TCGCGCCGCCGCACGAACCCGCGCCCGACGTCGTGCCGCTGAAGGATGCC
CATCTGCGCGGGGTCTTCGATCCGCTGTCGTCGCTGCTGGTGCTGTCGCA
CCACCTGGGCGGCAATCCGTGCGACCGCAGGATCGGAGTGTTCGAGGGCA
AGCAGCGTTTCGATGTGGTCCTGACGCCACACCGGACCGAGAAACTCGCC
GAGAAGAAGCCGAGCGGACAGCCGACCGCCGGGCAGGTGTGCCGG
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