mRNA_P-wetherbeei_contig5852.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5852.1.1
Unique NamemRNA_P-wetherbeei_contig5852.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5852.1.1 vs. uniprot
Match: A0A7S4DHJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHJ8_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 1.480e-6
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   31 SREDFDACIRELLP-RFLPRAEAADLAETLHGVFDAYDRRGCGAAPMRDVLAGLSFLCGGSKSSKLA 228
            ++ +FDA +R L+P RFL   +   L+  L  +F +YD      A +RD+L GLS LC G+KS+KLA
Sbjct:    1 AKAEFDAAVRALVPERFLTEDDKGLLSFALSNLFFSYDLAQADKAALRDLLCGLSLLCAGTKSAKLA 67
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BLAST of mRNA_P-wetherbeei_contig5852.1.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.970e-6
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   28 ISREDFDACIRELLP-RFLPRAEAADLAETLHGVFDAYDRRGCGAAPMRDVLAGLSFLCGGSKSSKLA 228
            +++ DFDA IREL+P +++P  +   L++ L  VF A++        + +++ GLS LC G+KSSKLA
Sbjct:   72 MTKGDFDASIRELVPAKWIPEEDKQRLSQVLSAVFYAFEEAPGKGVCVAEIVGGLSLLCAGNKSSKLA 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5852.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DHJ8_HETAK1.480e-643.28Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FUX5_ECTSI5.970e-639.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5852contigP-wetherbeei_contig5852:13..258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FUX5
Model size246
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.78e-07
EggNOG OGs2CU92@1|root,2RK0N@2759|Eukaryota
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.4049013-CDS-P-wetherbeei_contig5852:12..2581683186866.4049013-CDS-P-wetherbeei_contig5852:12..258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5852 13..258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5852.1.1prot_P-wetherbeei_contig5852.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5852 13..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5852.1.1

>prot_P-wetherbeei_contig5852.1.1 ID=prot_P-wetherbeei_contig5852.1.1|Name=mRNA_P-wetherbeei_contig5852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
AAGRRPNPGISREDFDACIRELLPRFLPRAEAADLAETLHGVFDAYDRRG
CGAAPMRDVLAGLSFLCGGSKSSKLAVSAAF*
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mRNA from alignment at P-wetherbeei_contig5852:13..258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5852.1.1 ID=mRNA_P-wetherbeei_contig5852.1.1|Name=mRNA_P-wetherbeei_contig5852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig5852:13..258- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGGGAAGAAGACCGAATCCGGGAATAAGCCGTGAGGACTTCGATGC
CTGCATCCGGGAGCTGCTGCCGCGCTTCTTGCCGCGAGCGGAGGCGGCCG
ATCTGGCGGAAACGCTCCACGGCGTGTTTGACGCGTACGACCGGCGGGGT
TGCGGCGCGGCGCCGATGCGGGACGTCCTGGCGGGCCTCTCCTTCCTATG
CGGCGGCAGCAAGAGCAGCAAGCTCGCGGTGAGCGCGGCTTTTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5852:13..258-

>mRNA_P-wetherbeei_contig5852.1.1 ID=mRNA_P-wetherbeei_contig5852.1.1|Name=mRNA_P-wetherbeei_contig5852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig5852:13..258- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGGGAAGAAGACCGAATCCGGGAATAAGCCGTGAGGACTTCGATGC
CTGCATCCGGGAGCTGCTGCCGCGCTTCTTGCCGCGAGCGGAGGCGGCCG
ATCTGGCGGAAACGCTCCACGGCGTGTTTGACGCGTACGACCGGCGGGGT
TGCGGCGCGGCGCCGATGCGGGACGTCCTGGCGGGCCTCTCCTTCCTATG
CGGCGGCAGCAAGAGCAGCAAGCTCGCGGTGAGCGCGGCTTTTTAA
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