mRNA_P-wetherbeei_contig58513.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58513.1.1
Unique NamemRNA_P-wetherbeei_contig58513.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A3D5DEY9_9GAMM (Short-chain dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEY9_9GAMM)

HSP 1 Score: 171 bits (432), Expect = 3.220e-51
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSKKGPAQ 318
            TKHAAVAFAEWV+IKYRD+GI VSVLAPQAVRTPMTDRP+GA VAS+DGMIEPE L D VIETMA+EEFLM+PH  V+ YMARK  +IDRWL GMNRWR+K GPA+
Sbjct:  152 TKHAAVAFAEWVSIKYRDQGICVSVLAPQAVRTPMTDRPEGAIVASLDGMIEPEDLTDYVIETMAKEEFLMIPHQEVKGYMARKNEDIDRWLVGMNRWRTKSGPAR 257          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A192IGE4_9HYPH (Short-chain dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IGE4_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 7.390e-39
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSKK 306
            TKHAAV+FAEW++I Y D+G+ VSVLAPQAVRT MT   +  SVAS+DGMIEPEQLADCVIETM +EEFL+LPH  VR+YM RK  ++DRWL GM R+++K+
Sbjct:  152 TKHAAVSFAEWLSINYGDRGVHVSVLAPQAVRTAMTSGRN-VSVASVDGMIEPEQLADCVIETMDKEEFLILPHEQVREYMKRKALDVDRWLSGMRRFKAKR 252          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A523PGV1_9PROT (SDR family oxidoreductase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PGV1_9PROT)

HSP 1 Score: 138 bits (348), Expect = 1.370e-38
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSK 303
            TKHAAVA AEW+AI+Y DKG+RVSVLAPQAVRT MT   DG  VAS+DGMIE ++LADCV+ TM  E+FL+LPHP+V +YM RKV ++DRWL GM R ++K
Sbjct:  151 TKHAAVALAEWLAIEYGDKGVRVSVLAPQAVRTAMTAGRDGL-VASVDGMIEADELADCVVRTMEEEKFLILPHPIVANYMQRKVNDVDRWLSGMRRLKAK 250          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A2G1Z2F8_9PROT (Short-chain dehydrogenase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2G1Z2F8_9PROT)

HSP 1 Score: 136 bits (342), Expect = 2.860e-38
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSKKGPA 315
            TKHAAVAFAE +AI+Y DKGI VSVL PQ+VRT M     GA VAS+DG +EPEQLADCVIETM REEFL+LPHP VRDY+ RK  + DRWL GM R R +  P 
Sbjct:  100 TKHAAVAFAETMAIRYGDKGIHVSVLCPQSVRTAMASERGGA-VASVDGTLEPEQLADCVIETMDREEFLILPHPQVRDYIKRKTSDYDRWLSGMRRLRDRYLPG 203          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A2D6T5R4_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T5R4_9PROT)

HSP 1 Score: 137 bits (345), Expect = 4.280e-38
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNR 291
            TKHAAVA AE++AIKY D+G+ VSVL PQAVRT MT R D   VA++DGMIEPE+LA+CVIETM REEFL+LPHPVV DYM RK  + DRWL GM R
Sbjct:  152 TKHAAVALAEFLAIKYGDRGVHVSVLCPQAVRTAMT-RDDEGGVAAVDGMIEPEELAECVIETMEREEFLILPHPVVLDYMRRKTSDYDRWLSGMRR 247          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A2G1Z0D1_9PROT (Short-chain dehydrogenase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2G1Z0D1_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.010e-35
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWR 297
            TKHAA+AFAE +AI+Y DKGIRVSVL PQ VRT MT+  +G +VA++DG +EPE+LADCV+ +MA+EEFL+LPHP V +Y+ RK GN DRWL GM + R
Sbjct:  152 TKHAAIAFAETMAIRYGDKGIRVSVLCPQQVRTAMTEGHEG-NVAAVDGTMEPEELADCVVASMAKEEFLILPHPQVLEYIQRKTGNYDRWLSGMRKLR 249          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A2E2QFI8_9PROT (Short-chain dehydrogenase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2E2QFI8_9PROT)

HSP 1 Score: 130 bits (328), Expect = 1.420e-35
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMT-DRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWR 297
            TKHAAVAFAE ++I+Y DKGI VSVL PQ+VRT MT    DG  VAS+DG++EPEQLADCV+ETM +EEFL+LPHP VR+YM RK G+ DRWL+GM + R
Sbjct:  152 TKHAAVAFAETLSIRYGDKGICVSVLCPQSVRTAMTASLLDG--VASVDGVLEPEQLADCVVETMDKEEFLILPHPQVREYMMRKAGDYDRWLKGMRKLR 249          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A1Z9K7F8_9GAMM (Short-chain dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TMED180 TaxID=1986740 RepID=A0A1Z9K7F8_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 1.570e-35
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMT-DRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSKKG 309
            TKHAAV+FAEW+AI Y D+G++VSVL PQAVRT MT D PDG  VAS+DGMIEPEQ+++ V+ T+  E FL+LPHP V DYM RK G+ DRW+EGM + +S  G
Sbjct:  152 TKHAAVSFAEWLAITYGDRGLKVSVLCPQAVRTAMTADDPDG--VASVDGMIEPEQVSEAVVTTLKNESFLVLPHPKVLDYMQRKSGDYDRWIEGMKKLQSSYG 253          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: A0A1Y5S2C0_9PROT (Putative ketoacyl reductase n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5S2C0_9PROT)

HSP 1 Score: 130 bits (327), Expect = 2.010e-35
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRSK 303
            TKHAAVAFAE +AI+Y DKG+RVSVL PQ+VRT MT   +   VA++DGMIEPE LADCV+ETM REEFL+LPHP V +YM RK  + DRWL GM R R +
Sbjct:  152 TKHAAVAFAETLAIRYGDKGVRVSVLCPQSVRTAMTAGHEN-HVAAVDGMIEPEVLADCVVETMDREEFLILPHPQVIEYMRRKTADYDRWLSGMRRLRDR 251          
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Match: UPI00146BA16D (SDR family oxidoreductase n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146BA16D)

HSP 1 Score: 130 bits (327), Expect = 2.010e-35
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGMIEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWR 297
            +KHAAVAFAE +AI+Y DKG+RVSVL PQ VRT MT    G SV+ +DG +EPE+LADCVIETM REEFL+LPHP V DYM RK  + DRW+ GM R R
Sbjct:  152 SKHAAVAFAETLAIRYGDKGVRVSVLCPQQVRTAMTQNRAG-SVSDVDGTLEPEELADCVIETMDREEFLILPHPKVLDYMRRKTADYDRWINGMRRLR 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58513.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DEY9_9GAMM3.220e-5179.25Short-chain dehydrogenase n=1 Tax=Gammaproteobacte... [more]
A0A192IGE4_9HYPH7.390e-3967.65Short-chain dehydrogenase n=2 Tax=Alphaproteobacte... [more]
A0A523PGV1_9PROT1.370e-3867.33SDR family oxidoreductase n=1 Tax=Proteobacteria b... [more]
A0A2G1Z2F8_9PROT2.860e-3867.62Short-chain dehydrogenase n=1 Tax=Sneathiella sp. ... [more]
A0A2D6T5R4_9PROT4.280e-3871.13Short-chain dehydrogenase n=1 Tax=Rhodospirillacea... [more]
A0A2G1Z0D1_9PROT1.010e-3564.65Short-chain dehydrogenase n=1 Tax=Sneathiella sp. ... [more]
A0A2E2QFI8_9PROT1.420e-3568.00Short-chain dehydrogenase n=1 Tax=Sneathiella sp. ... [more]
A0A1Z9K7F8_9GAMM1.570e-3563.46Short-chain dehydrogenase n=1 Tax=Gammaproteobacte... [more]
A0A1Y5S2C0_9PROT2.010e-3566.34Putative ketoacyl reductase n=1 Tax=Oceanibacteriu... [more]
UPI00146BA16D2.010e-3566.67SDR family oxidoreductase n=1 Tax=Sneathiella chin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58513contigP-wetherbeei_contig58513:6..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog493475.GARC_0197
PFAMsadh_short
Model size324
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.85e-32
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1MW86@1224|Proteobacteria,1RTMZ@1236|Gammaproteobacteria,46APE@72275|Alteromonadaceae
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size324
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.353725-CDS-P-wetherbeei_contig58513:5..3291683186866.353725-CDS-P-wetherbeei_contig58513:5..329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58513 6..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58513.1.1prot_P-wetherbeei_contig58513.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58513 6..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58513.1.1

>prot_P-wetherbeei_contig58513.1.1 ID=prot_P-wetherbeei_contig58513.1.1|Name=mRNA_P-wetherbeei_contig58513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
TKHAAVAFAEWVAIKYRDKGIRVSVLAPQAVRTPMTDRPDGASVASIDGM
IEPEQLADCVIETMAREEFLMLPHPVVRDYMARKVGNIDRWLEGMNRWRS
KKGPAQR*
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mRNA from alignment at P-wetherbeei_contig58513:6..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58513.1.1 ID=mRNA_P-wetherbeei_contig58513.1.1|Name=mRNA_P-wetherbeei_contig58513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig58513:6..329+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAAACATGCGGCAGTGGCATTCGCCGAATGGGTCGCGATCAAGTATCG CGACAAGGGCATTCGCGTGTCCGTGCTGGCGCCGCAGGCCGTGCGTACGC CCATGACCGACAGGCCCGATGGTGCCTCGGTCGCGAGTATCGACGGCATG ATCGAACCCGAGCAGCTCGCCGACTGTGTGATCGAGACCATGGCCAGGGA AGAGTTTCTGATGCTGCCGCATCCGGTGGTGAGAGACTATATGGCGCGCA AGGTTGGCAATATTGACCGCTGGCTGGAAGGGATGAATCGTTGGCGGTCG AAGAAAGGGCCGGCGCAGCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58513:6..329+

>mRNA_P-wetherbeei_contig58513.1.1 ID=mRNA_P-wetherbeei_contig58513.1.1|Name=mRNA_P-wetherbeei_contig58513.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig58513:6..329+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAAACATGCGGCAGTGGCATTCGCCGAATGGGTCGCGATCAAGTATCG
CGACAAGGGCATTCGCGTGTCCGTGCTGGCGCCGCAGGCCGTGCGTACGC
CCATGACCGACAGGCCCGATGGTGCCTCGGTCGCGAGTATCGACGGCATG
ATCGAACCCGAGCAGCTCGCCGACTGTGTGATCGAGACCATGGCCAGGGA
AGAGTTTCTGATGCTGCCGCATCCGGTGGTGAGAGACTATATGGCGCGCA
AGGTTGGCAATATTGACCGCTGGCTGGAAGGGATGAATCGTTGGCGGTCG
AAGAAAGGGCCGGCGCAGCGCTAA
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