mRNA_P-wetherbeei_contig58503.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58503.1.1
Unique NamemRNA_P-wetherbeei_contig58503.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A7C4TVD0_9HYPH (BPL/LPL catalytic domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TVD0_9HYPH)

HSP 1 Score: 173 bits (438), Expect = 2.870e-52
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 1
Query:   31 LPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWP 342
            +PP +R +GLRE+GDA+AKA  TA  AGAGTLVW RRFDLVE AV+LEPEEPLA+ARRALFAGMNAAGDA+AA+CPPEKP+ FAWPD I LDGGL+GG RL WP
Sbjct:    1 MPPIYREVGLRELGDAYAKARETAASAGAGTLVWVRRFDLVEAAVILEPEEPLASARRALFAGMNAAGDALAAFCPPEKPITFAWPDAIYLDGGLVGGTRLGWP 104          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: UPI001BA630A7 (hypothetical protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA630A7)

HSP 1 Score: 159 bits (401), Expect = 1.700e-46
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   25 LHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            L LPPG+  + LRE+GDAFA A   AGEAGAGTLVW RR+DLVE AVVLEP+EPL +ARRA FAGMNA  DAIAA+CPPE+ + F WPDT+L D GL+GG RL WP 
Sbjct:   11 LDLPPGYTLVALRELGDAFAHACEIAGEAGAGTLVWVRRYDLVEFAVVLEPDEPLVSARRAFFAGMNALADAIAAHCPPEREVKFVWPDTVLFDEGLLGGARLGWPR 117          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: K8PUL5_9BRAD (BPL/LPL catalytic domain-containing protein n=6 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8PUL5_9BRAD)

HSP 1 Score: 158 bits (400), Expect = 2.470e-46
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 RKTMTDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            R    +  L LPPG++ + LRE GDAFA     A EAGAGTLVW RR+DLVE AVVLEP++PL +ARRA FAGMNA GDAIA +CPPE+ + F WPDTIL DGG++GG RL WP+
Sbjct:    5 RHAQAEQPLDLPPGYKLVSLREYGDAFAHGCTIAAEAGAGTLVWVRRYDLVEFAVVLEPDQPLTSARRAFFAGMNAIGDAIAVHCPPEREVQFTWPDTILFDGGVLGGGRLGWPK 119          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A5C7SBE1_RHISP (BPL/LPL catalytic domain-containing protein n=1 Tax=Rhizobium sp. TaxID=391 RepID=A0A5C7SBE1_RHISP)

HSP 1 Score: 158 bits (399), Expect = 3.500e-46
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   25 LHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            L LPPG+  + LRE GDAFA     A EAGAGTLVW RR+DLVE AVVLEP+EPL +ARRA FAGMNA  DAIAA+CPPE+ + FAWPD+I+ DGGL+GG RL WPE
Sbjct:   13 LDLPPGYTLVPLREYGDAFAHGCGIAAEAGAGTLVWVRRYDLVEFAVVLEPDEPLQSARRAFFAGMNATADAIAAHCPPERQVGFAWPDSIMFDGGLLGGARLGWPE 119          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A4U6BSD9_9BRAD (BPL/LPL catalytic domain-containing protein n=2 Tax=Afipia massiliensis TaxID=211460 RepID=A0A4U6BSD9_9BRAD)

HSP 1 Score: 157 bits (397), Expect = 7.210e-46
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 RKTMTDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            R    +  L LPPG+  + LRE GDAFA     A +AGAGTLVW RR+DLVE AVVLEP+EPLA+ARRA FAGMNA GDAIA +CPPE+ + F WPDTIL DGG++GG +L WP+
Sbjct:    5 RTAQVEQPLDLPPGYTLVSLREYGDAFAHGCTIAAQAGAGTLVWVRRYDLVEFAVVLEPDEPLASARRAFFAGMNAIGDAIAVHCPPEREVQFTWPDTILFDGGVLGGGQLGWPK 119          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A0R3LDY7_9BRAD (BPL/LPL catalytic domain-containing protein n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3LDY7_9BRAD)

HSP 1 Score: 156 bits (395), Expect = 1.410e-45
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   13 TDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            T+  L LPPG+  + LRE+GDAFA A   A EAGAGTLVW RR+DLVE AVVLEP+EPLA+ARRA FAGMNA  DAIAA+CPPE+ + F WPD I  D GL+GG RLAWP 
Sbjct:    8 TEQTLDLPPGYTLVALRELGDAFAHAREIAAEAGAGTLVWVRRYDLVEFAVVLEPDEPLASARRAFFAGMNALADAIAAHCPPEREVAFDWPDAIRFDAGLLGGGRLAWPN 118          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: UPI000A470CB2 (hypothetical protein n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI000A470CB2)

HSP 1 Score: 156 bits (394), Expect = 1.990e-45
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   25 LHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            L LPPG+  + LREVGDAFA     A EAGAGTLVW RR+DL+E AVVLEP+EPL +ARRA FAGMNAA DAIAA+CPPE+ + F WPD I  DGGL+GG RL WP+
Sbjct:   12 LDLPPGYTLVALREVGDAFAHGCNIAAEAGAGTLVWVRRYDLIEFAVVLEPDEPLVSARRAFFAGMNAAADAIAAHCPPEREVAFDWPDAIRFDGGLLGGGRLGWPK 118          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: UPI001F35F571 (biotin/lipoate--protein ligase family protein n=1 Tax=Bradyrhizobium sp. G127 TaxID=2904800 RepID=UPI001F35F571)

HSP 1 Score: 156 bits (394), Expect = 2.050e-45
Identity = 73/114 (64.04%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    1 RKTMTDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWP 342
            R T  +  L LPPG+  + LRE GDAFA     A +AGAGTLVW RR+DLVE AVVLEP EPL +ARRA FAGMNA  DAIA +CPPE+ + F WPDTIL DGG++GG RL WP
Sbjct:    5 RATYAEQPLDLPPGYTLVSLREYGDAFAHGCGIAADAGAGTLVWVRRYDLVEFAVVLEPNEPLVSARRAFFAGMNATADAIAVHCPPERQVSFTWPDTILFDGGVLGGARLGWP 118          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A2T4YXZ2_9HYPH (Biotin/lipoate A/B protein ligase family protein n=1 Tax=Phreatobacter oligotrophus TaxID=1122261 RepID=A0A2T4YXZ2_9HYPH)

HSP 1 Score: 154 bits (388), Expect = 1.520e-44
Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 1
Query:   13 TDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            T   L LPPGFRA+ LRE GDAFA A  TAGE GAGTLVW RRFD+ E AVVLEPEEPLA AR+A+F GM A  DAIA+ CPPE+ +  A+PDTI  DGGL+GG RL WP+
Sbjct:    8 TPSTLDLPPGFRAVALRESGDAFAHACRTAGEEGAGTLVWVRRFDMAEFAVVLEPEEPLAEARKAVFMGMAATADAIASLCPPERSVGIAFPDTIRFDGGLVGGGRLGWPK 118          
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Match: A0A2S0NGD3_9HYPH (BPL/LPL catalytic domain-containing protein n=1 Tax=Phreatobacter cathodiphilus TaxID=1868589 RepID=A0A2S0NGD3_9HYPH)

HSP 1 Score: 153 bits (386), Expect = 3.040e-44
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 1
Query:   25 LHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEVAVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDGGLIGGMRLAWPE 345
            L LPPGFRA+ LRE GDAFA A  TA E GAGTLVW RRFDL E AV+LEP++PLA AR+A F GMNA  DAIAA CPPE+ + FA+PD I  DGGL+GG RL WP+
Sbjct:   12 LDLPPGFRAVPLRESGDAFAHACRTAAEEGAGTLVWVRRFDLAEFAVILEPDQPLAEARKAFFMGMNATADAIAALCPPERSVAFAFPDAIRFDGGLVGGGRLGWPK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58503.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TVD0_9HYPH2.870e-5276.92BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
UPI001BA630A71.700e-4669.16hypothetical protein n=1 Tax=Bradyrhizobium lablab... [more]
K8PUL5_9BRAD2.470e-4663.48BPL/LPL catalytic domain-containing protein n=6 Ta... [more]
A0A5C7SBE1_RHISP3.500e-4669.16BPL/LPL catalytic domain-containing protein n=1 Ta... [more]
A0A4U6BSD9_9BRAD7.210e-4663.48BPL/LPL catalytic domain-containing protein n=2 Ta... [more]
A0A0R3LDY7_9BRAD1.410e-4567.57BPL/LPL catalytic domain-containing protein n=6 Ta... [more]
UPI000A470CB21.990e-4568.22hypothetical protein n=1 Tax=Bradyrhizobium sp. UR... [more]
UPI001F35F5712.050e-4564.04biotin/lipoate--protein ligase family protein n=1 ... [more]
A0A2T4YXZ2_9HYPH1.520e-4467.57Biotin/lipoate A/B protein ligase family protein n... [more]
A0A2S0NGD3_9HYPH3.040e-4468.22BPL/LPL catalytic domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58503contigP-wetherbeei_contig58503:158..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1197906.CAJQ02000015_gene261
PFAMsBPL_LplA_LipB_2,DUF4444
Model size345
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-46
EggNOG OGsCOG0340@1|root,COG0340@2|Bacteria,1N1WU@1224|Proteobacteria,2TQK4@28211|Alphaproteobacteria,3JTCW@41294|Bradyrhizobiaceae
DescriptionBiotin/lipoate A/B protein ligase family
Cds size336
COG categoryH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.2753878-UTR-P-wetherbeei_contig58503:157..1661683186866.2753878-UTR-P-wetherbeei_contig58503:157..166Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58503 158..166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186866.2849169-CDS-P-wetherbeei_contig58503:166..5021683186866.2849169-CDS-P-wetherbeei_contig58503:166..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58503 167..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58503.1.1prot_P-wetherbeei_contig58503.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58503 167..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58503.1.1

>prot_P-wetherbeei_contig58503.1.1 ID=prot_P-wetherbeei_contig58503.1.1|Name=mRNA_P-wetherbeei_contig58503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MTDGDLHLPPGFRAIGLREVGDAFAKAVATAGEAGAGTLVWTRRFDLVEV
AVVLEPEEPLATARRALFAGMNAAGDAIAAYCPPEKPLVFAWPDTILLDG
GLIGGMRLAWPE
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mRNA from alignment at P-wetherbeei_contig58503:158..502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58503.1.1 ID=mRNA_P-wetherbeei_contig58503.1.1|Name=mRNA_P-wetherbeei_contig58503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58503:158..502+ (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGACCATGACGGATGGCGATTTACATTTGCCGCCGGGCTTCAGGGC GATCGGGCTCCGGGAGGTCGGAGATGCCTTCGCCAAGGCTGTTGCCACGG CGGGTGAGGCAGGAGCGGGGACGCTCGTTTGGACGCGGCGGTTCGATCTC GTCGAGGTGGCTGTGGTGCTCGAGCCGGAGGAGCCACTGGCGACCGCCCG GCGCGCGCTATTCGCGGGGATGAATGCTGCAGGTGATGCGATCGCAGCCT ATTGCCCGCCGGAAAAGCCGCTCGTGTTCGCGTGGCCGGATACCATCCTT CTCGACGGCGGATTGATCGGCGGAATGCGGCTCGCATGGCCCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58503:158..502+

>mRNA_P-wetherbeei_contig58503.1.1 ID=mRNA_P-wetherbeei_contig58503.1.1|Name=mRNA_P-wetherbeei_contig58503.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig58503:158..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGATGGCGATTTACATTTGCCGCCGGGCTTCAGGGCGATCGGGCT
CCGGGAGGTCGGAGATGCCTTCGCCAAGGCTGTTGCCACGGCGGGTGAGG
CAGGAGCGGGGACGCTCGTTTGGACGCGGCGGTTCGATCTCGTCGAGGTG
GCTGTGGTGCTCGAGCCGGAGGAGCCACTGGCGACCGCCCGGCGCGCGCT
ATTCGCGGGGATGAATGCTGCAGGTGATGCGATCGCAGCCTATTGCCCGC
CGGAAAAGCCGCTCGTGTTCGCGTGGCCGGATACCATCCTTCTCGACGGC
GGATTGATCGGCGGAATGCGGCTCGCATGGCCCGAA
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