mRNA_P-wetherbeei_contig58480.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58480.1.1
Unique NamemRNA_P-wetherbeei_contig58480.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A3L7NV74_9BACT (DUF861 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NV74_9BACT)

HSP 1 Score: 125 bits (313), Expect = 5.860e-35
Identity = 55/106 (51.89%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   25 VSNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            +S V    +EP L NG  FG++HWLR +S G GMLL G W+H PA+ PY F  DET H+LEG+V + ++G   + L  GD+ SF KGQ S W I  P KKFFV+SG
Sbjct:    3 LSRVDVQSFEPFLVNGQPFGEVHWLRQDSSGTGMLLTGLWTHKPASFPYTFPADETFHLLEGKVTIAVEGQPPVNLIPGDIVSFRKGQVSVWTIHEPMKKFFVISG 108          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A1S8CBY8_9ACTN (Cupin_3 domain-containing protein n=1 Tax=Modestobacter sp. VKM Ac-2676 TaxID=1678130 RepID=A0A1S8CBY8_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 5.120e-33
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   28 SNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            S V+  DYEP +  G   G++HW+RTE      L  G W   P + PY F  DETIH LEGE++++++ G+ + LR GDVASF KG  STW +  PFKK FV+SG
Sbjct:   13 SAVSADDYEPFVVGGEAVGEVHWIRTEGAEGATLAVGLWRSEPQSFPYPFTADETIHALEGELVIDLESGERVVLRPGDVASFTKGTASTWTVTEPFKKLFVISG 117          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A7M2YU88_9ACTN (Cupin-type protein n=1 Tax=Gaiella occulta TaxID=1002870 RepID=A0A7M2YU88_9ACTN)

HSP 1 Score: 114 bits (285), Expect = 1.460e-30
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   28 SNVATTDYEPH-----LENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            ++V TTDYEP      +  G+    + WLRTESGG G+L  G ++  P+T  Y F GDE+ HVL+G++ + +DGGDT+TL  GD+ASF KG TSTW +  P +KFFV+SG
Sbjct:   10 THVDTTDYEPFNGFEAVLEGDPDAKVAWLRTESGGEGVLYTGMFTAEPSTFRYVFGGDESFHVLDGDLDIAVDGGDTVTLAPGDIASFPKGATSTWALRAPLRKFFVISG 119          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A1M6Q4A6_PSETH (Cupin_3 domain-containing protein n=1 Tax=Pseudonocardia thermophila TaxID=1848 RepID=A0A1M6Q4A6_PSETH)

HSP 1 Score: 112 bits (280), Expect = 7.710e-30
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   28 SNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVE-IDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            S++   ++EP +  G   G++HW+RTE      L  G W   P + PY F  DETIHVLEGE++++ ++ G+ + LR GD+ASF KG  STW +  PFKK FV+SG
Sbjct:   11 SSINAEEWEPFVVGGQAIGEVHWIRTEGAEGATLNVGLWRSDPQSFPYPFNADETIHVLEGELVIDLVESGEEVVLRPGDIASFTKGTKSTWTVTSPFKKLFVISG 116          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A022LEY2_9ACTN (Cupin_3 domain-containing protein n=1 Tax=Dietzia sp. UCD-THP TaxID=1292020 RepID=A0A022LEY2_9ACTN)

HSP 1 Score: 110 bits (276), Expect = 2.700e-29
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   28 SNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLP----YEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVS 339
            S +  T+YEP LE+G + G++HWLR  SG   + LAG W   P   P    Y F  +ETIHVLEG V +++ G + + L EGD+ASF KG  STW +  PF+KFFV S
Sbjct:    4 SQIDATEYEPFLEDGQQLGEVHWLRQSSGAEVVHLAGVWRISPEEAPESFEYPFETEETIHVLEGSVTIDVPGAEPLFLTEGDIASFTKGTVSTWTVQAPFRKFFVCS 111          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A1Y2MJQ0_PSEAH (Cupin_3 domain-containing protein n=1 Tax=Pseudonocardia autotrophica TaxID=2074 RepID=A0A1Y2MJQ0_PSEAH)

HSP 1 Score: 110 bits (274), Expect = 6.470e-29
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   28 SNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVE-IDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            S     D+EP +  G   G++HW+RTE      L  G W   P + PY F  DETIH L+GE++++ +D G+ + L+ GD+ASF KG  STW +  PF+K FV+SG
Sbjct:   12 STATAQDWEPFVVGGEAIGEVHWIRTEGAEGATLHVGLWRSEPQSFPYPFTADETIHALDGELVIDLVDSGEQVVLKPGDIASFTKGTKSTWTVTEPFRKLFVISG 117          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: F9VVL3_9ACTN (Cupin_3 domain-containing protein n=2 Tax=Gordonia TaxID=2053 RepID=F9VVL3_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 8.910e-29
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   49 YEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            YEP +  G   G++HW+RTE      L  G W   P + PY F  DETI+ LEGE++V+++ G+ + LR GD+ASF KG  STW +   FKK FV+SG
Sbjct:   19 YEPFIVGGEAVGEVHWVRTEGAEGATLSVGLWRSEPQSFPYPFNADETIYALEGELVVDLESGEKVVLRPGDIASFTKGTKSTWTVTESFKKLFVISG 116          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: UPI001C49CF5B (cupin domain-containing protein n=1 Tax=Pseudonocardia oceani TaxID=2792013 RepID=UPI001C49CF5B)

HSP 1 Score: 109 bits (272), Expect = 1.260e-28
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   34 VATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVE-IDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            V   ++EP +  G   G++HW+RTE      L  G W   P + PY F  DETIH LEGE++++ ++ G+ + L  GDVASF KG  STW +  PFKK FV+SG
Sbjct:   13 VTADEWEPFVVGGEAVGEVHWIRTEGAEGATLSVGLWRSDPQSFPYPFTADETIHALEGELVIDLVESGEKVVLAPGDVASFAKGTKSTWTVTSPFKKLFVISG 116          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A6M6JCI4_9PSEU (DUF861 domain-containing protein n=1 Tax=Pseudonocardia broussonetiae TaxID=2736640 RepID=A0A6M6JCI4_9PSEU)

HSP 1 Score: 109 bits (272), Expect = 1.300e-28
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   34 VATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVEI-DGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            V   ++EP +  G   G++HW+RTE      L  G W   P + PY F  DETIH LEGE+++++ D G+ + L+ GDVASF KG  STW +  PFKK FV+SG
Sbjct:   14 VTAQEWEPFVVGGEAVGEVHWIRTEGAEGATLGVGLWRSEPQSFPYPFTADETIHALEGELVIDVVDTGEKVVLQPGDVASFTKGTRSTWTVTSPFKKLFVISG 117          
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Match: A0A4R1HT96_9PSEU (Uncharacterized protein DUF861 n=1 Tax=Pseudonocardia endophytica TaxID=401976 RepID=A0A4R1HT96_9PSEU)

HSP 1 Score: 107 bits (266), Expect = 1.030e-27
Identity = 48/105 (45.71%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   34 VATTD-YEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSHGPATLPYEFMGDETIHVLEGEVIVE-IDGGDTMTLREGDVASFCKGQTSTWRIVRPFKKFFVVSG 342
            VAT + +EP +  G   G++HW+RTE      L  G W     + PY F  DETIH LEGE++++ +D G+ + L+ GD+ASF KG  STW +  PFKK FV+SG
Sbjct:   12 VATAEEWEPFVVGGEAIGEVHWVRTEGAEGATLHVGLWRSDEQSFPYPFTADETIHALEGELVIDLVDSGEQVVLKPGDIASFTKGTKSTWTVTSPFKKLFVISG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58480.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L7NV74_9BACT5.860e-3551.89DUF861 domain-containing protein n=1 Tax=Planctomy... [more]
A0A1S8CBY8_9ACTN5.120e-3348.57Cupin_3 domain-containing protein n=1 Tax=Modestob... [more]
A0A7M2YU88_9ACTN1.460e-3050.00Cupin-type protein n=1 Tax=Gaiella occulta TaxID=1... [more]
A0A1M6Q4A6_PSETH7.710e-3045.28Cupin_3 domain-containing protein n=1 Tax=Pseudono... [more]
A0A022LEY2_9ACTN2.700e-2948.15Cupin_3 domain-containing protein n=1 Tax=Dietzia ... [more]
A0A1Y2MJQ0_PSEAH6.470e-2943.40Cupin_3 domain-containing protein n=1 Tax=Pseudono... [more]
F9VVL3_9ACTN8.910e-2946.94Cupin_3 domain-containing protein n=2 Tax=Gordonia... [more]
UPI001C49CF5B1.260e-2845.19cupin domain-containing protein n=1 Tax=Pseudonoca... [more]
A0A6M6JCI4_9PSEU1.300e-2846.15DUF861 domain-containing protein n=1 Tax=Pseudonoc... [more]
A0A4R1HT96_9PSEU1.030e-2745.71Uncharacterized protein DUF861 n=1 Tax=Pseudonocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58480contigP-wetherbeei_contig58480:54..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1292020.H483_0110360
PFAMsCupin_3
Model size345
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.43e-30
EggNOG OGsCOG3450@1|root,COG3450@2|Bacteria,2GSTB@201174|Actinobacteria
DescriptionProtein of unknown function (DUF861)
Cds size345
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.8944857-CDS-P-wetherbeei_contig58480:53..3981683186865.8944857-CDS-P-wetherbeei_contig58480:53..398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58480 54..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58480.1.1prot_P-wetherbeei_contig58480.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58480 54..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58480.1.1

>prot_P-wetherbeei_contig58480.1.1 ID=prot_P-wetherbeei_contig58480.1.1|Name=mRNA_P-wetherbeei_contig58480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MAVTKNTPVSNVATTDYEPHLENGNKFGDIHWLRTESGGAGMLLAGFWSH
GPATLPYEFMGDETIHVLEGEVIVEIDGGDTMTLREGDVASFCKGQTSTW
RIVRPFKKFFVVSG*
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mRNA from alignment at P-wetherbeei_contig58480:54..398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58480.1.1 ID=mRNA_P-wetherbeei_contig58480.1.1|Name=mRNA_P-wetherbeei_contig58480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58480:54..398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGACAAAGAACACGCCTGTGTCCAACGTAGCGACGACGGACTA CGAGCCCCACCTCGAAAACGGGAACAAGTTTGGGGACATTCACTGGCTTC GCACTGAGAGCGGTGGAGCAGGAATGTTGCTTGCCGGCTTCTGGAGTCAC GGGCCTGCAACACTCCCTTATGAATTCATGGGCGACGAGACGATTCACGT GCTGGAGGGGGAAGTCATCGTCGAAATCGATGGCGGGGATACGATGACTC TGCGCGAGGGCGATGTCGCGTCATTCTGCAAAGGCCAGACCTCGACCTGG AGAATTGTCCGGCCGTTCAAGAAGTTTTTCGTGGTGAGCGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58480:54..398-

>mRNA_P-wetherbeei_contig58480.1.1 ID=mRNA_P-wetherbeei_contig58480.1.1|Name=mRNA_P-wetherbeei_contig58480.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig58480:54..398- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGACAAAGAACACGCCTGTGTCCAACGTAGCGACGACGGACTA
CGAGCCCCACCTCGAAAACGGGAACAAGTTTGGGGACATTCACTGGCTTC
GCACTGAGAGCGGTGGAGCAGGAATGTTGCTTGCCGGCTTCTGGAGTCAC
GGGCCTGCAACACTCCCTTATGAATTCATGGGCGACGAGACGATTCACGT
GCTGGAGGGGGAAGTCATCGTCGAAATCGATGGCGGGGATACGATGACTC
TGCGCGAGGGCGATGTCGCGTCATTCTGCAAAGGCCAGACCTCGACCTGG
AGAATTGTCCGGCCGTTCAAGAAGTTTTTCGTGGTGAGCGGGTAG
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