mRNA_P-wetherbeei_contig58473.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58473.1.1
Unique NamemRNA_P-wetherbeei_contig58473.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: A0A7C4XTS4_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XTS4_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 3.370e-38
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALGQGS 396
            EA+    F+G +L +L A+Q  R+ A + TGR +L  GEL+A+T HNRQRL L  LVA+FIATI W GTTLGL LLL+  ML++GVR+   L+ V+ TT+A VY+LLIYLL +RLP G VE  +A ALG G+
Sbjct:   44 EARVTATFIGVILFSLSAIQFARLFARLVTGRASLSLGELVANTLHNRQRLALVSLVAVFIATIEWVGTTLGLVLLLMGCMLILGVRKITTLLAVSLTTAAAVYVLLIYLLESRLPKGPVEALIAHALGLGA 175          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: UPI00062BBE65 (tripartite tricarboxylate transporter TctB family protein n=1 Tax=Microvirga massiliensis TaxID=1033741 RepID=UPI00062BBE65)

HSP 1 Score: 115 bits (288), Expect = 4.540e-30
Identity = 60/129 (46.51%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALG 387
            EA++ G  +G  LL L  +Q+++++    +GR TLGFG L   +    QRL + L++ +F+A I W GTTLGLFL+++ SM V+GVRE   LIG+AF  +A VY+L I LL++RLP G+VE+ ++S LG
Sbjct:   44 EARATGTLIGVCLLVLTFLQILKVVVQARSGRATLGFGSLFERSTVQSQRLAILLILIVFVAVIPWLGTTLGLFLVMMASMWVLGVREWRTLIGIAFAVAATVYILFIALLDSRLPTGLVERLLSSLLG 172          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: UPI001300F259 (hypothetical protein n=1 Tax=Skermanella pratensis TaxID=2233999 RepID=UPI001300F259)

HSP 1 Score: 108 bits (269), Expect = 3.610e-27
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALGQG 393
            EA++ G  +G VLLAL AVQ+VRI+  +  G G+LGFG+L   T    QRL L  ++ LFI TI W GTTLGLFL+++ +M ++G+R+P  L+ VA   +A V+L+ I LL  R P G VE+ V   LG G
Sbjct:   44 EARANGTVIGVVLLALIAVQVVRIVLNLRNGTGSLGFGDLGRWTPAQGQRLALIGVLILFIVTIPWLGTTLGLFLVMLAAMWILGLRQPVTLLAVAGGVAASVFLVFIVLLGARFPPGPVERVVVPLLGGG 174          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: UPI00155396A7 (hypothetical protein n=1 Tax=Devosia sp. 919 TaxID=2726065 RepID=UPI00155396A7)

HSP 1 Score: 107 bits (266), Expect = 5.970e-27
Identity = 57/128 (44.53%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASAL 384
            EA+S G  +G+VLL  CA+Q++  +     GR + GFG+L  ++++NR+RL L L V +F A + +TGTTLGL L+L   ML+MGVR   +L G++  T++ V++LLI+L  +RLP G +E A+ S L
Sbjct:   27 EARSTGWLIGSVLLLFCALQVLLTLRQAVAGRISFGFGDLFENSQNNRRRLALLLAVTVFTALLPFTGTTLGLALVLCAGMLIMGVRNIWQLAGISLATASFVFILLIWLAGSRLPQGALEHALLSIL 154          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: A0A512DNG8_9PROT (Uncharacterized protein n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DNG8_9PROT)

HSP 1 Score: 103 bits (258), Expect = 1.640e-25
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALGQG 393
            EA++ G  VG  LL L A+Q+ R++  +  G G+LGFG+    T    QRL L   + +F+ TI W GTTLGLF +++ +M ++GVR P  L+GVA   SA VY++ I LL  R P G +E  +A   G G
Sbjct:   44 EARANGTVVGVTLLVLIAIQVARVVVQLRNGTGSLGFGDFAQWTPAQGQRLMLIAALIVFVMTIPWLGTTLGLFAVMLAAMWILGVRSPATLLGVAVGVSATVYIVFIVLLGARFPAGPIENGLAPLFGGG 174          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: UPI0019A4F6CA (Tripartite tricarboxylate transporter TctB family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019A4F6CA)

HSP 1 Score: 101 bits (252), Expect = 9.070e-25
Identity = 56/126 (44.44%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVAS 378
            EAK+ G+ +GT L+ L AVQLVRI   +A GRG L    L A      +R+G+  ++  FIATI W G TLGLF+ +  S+ ++GVR+P ++  ++F  +A  YLL I  LN+  PHG VE A+A+
Sbjct:   33 EAKANGVIIGTALVLLIAVQLVRIAVEIAKGRGDLSTEPLWAPREVLMKRVGMVAVLIAFIATIKWLGLTLGLFIGMAVSLWILGVRKPARVAAISFVVAASAYLLFILALNSSFPHGPVEHAIAA 158          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: A0A6N7GL05_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GL05_9HYPH)

HSP 1 Score: 101 bits (252), Expect = 1.490e-24
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALG 387
            EA++ G  +G  LL L A+Q+VRIIA    G GT+ FGE    T  +++RL + L++ +F+ATI W GTTLGL   +   M V+GVR+   L+GV+F T+A VYLL I  L T+LP G +E  +    G
Sbjct:   52 EARANGTVIGLTLLTLIAIQVVRIIALWREGAGTMSFGEFGRMTAGHQKRLTVLLILVVFVATIPWLGTTLGLLFSMFALMWVLGVRDIKTLVGVSFVTAAAVYLLFIAFLKTQLPAGPIEHLLQPLFG 180          
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Match: W9H726_9PROT (Uncharacterized protein n=2 Tax=Skermanella TaxID=204447 RepID=W9H726_9PROT)

HSP 1 Score: 100 bits (248), Expect = 3.450e-24
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQRLGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTSAVVYLLLIYLLNTRLPHGVVEKAVASALGQG 393
            EA++ G  VG  LL L A+Q+ R++  +    G+LGFG+L   T    QRL L   + +F+ TI W GTTLGLF +++ +M ++GVR P  L+GVA   S  VYLL I  L  R P G +E  +A   G G
Sbjct:   28 EARANGTVVGVTLLTLIAIQVARVVIQLRRSTGSLGFGDLGRWTPAQAQRLMLIATLIVFVITIPWLGTTLGLFAVMLAAMWILGVRAPSTLLGVALGVSTTVYLLFIVTLGARFPAGPIENGLAPLFGGG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58473.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7C4XTS4_9HYPH3.370e-3855.30Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI00062BBE654.540e-3046.51tripartite tricarboxylate transporter TctB family ... [more]
UPI001300F2593.610e-2748.09hypothetical protein n=1 Tax=Skermanella pratensis... [more]
UPI00155396A75.970e-2744.53hypothetical protein n=1 Tax=Devosia sp. 919 TaxID... [more]
A0A512DNG8_9PROT1.640e-2542.75Uncharacterized protein n=1 Tax=Skermanella aerola... [more]
UPI0019A4F6CA9.070e-2544.44Tripartite tricarboxylate transporter TctB family ... [more]
A0A6N7GL05_9HYPH1.490e-2444.96Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
W9H726_9PROT3.450e-2442.75Uncharacterized protein n=2 Tax=Skermanella TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58473contigP-wetherbeei_contig58473:100..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size399
Hectar predicted targeting categorysignal anchor
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.8039675-CDS-P-wetherbeei_contig58473:99..4981683186865.8039675-CDS-P-wetherbeei_contig58473:99..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58473 100..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58473.1.1prot_P-wetherbeei_contig58473.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58473 100..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58473.1.1

>prot_P-wetherbeei_contig58473.1.1 ID=prot_P-wetherbeei_contig58473.1.1|Name=mRNA_P-wetherbeei_contig58473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
EAKSAGLFVGTVLLALCAVQLVRIIAAVATGRGTLGFGELIADTRHNRQR
LGLALLVALFIATIGWTGTTLGLFLLLVCSMLVMGVREPGKLIGVAFTTS
AVVYLLLIYLLNTRLPHGVVEKAVASALGQGS*
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mRNA from alignment at P-wetherbeei_contig58473:100..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58473.1.1 ID=mRNA_P-wetherbeei_contig58473.1.1|Name=mRNA_P-wetherbeei_contig58473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig58473:100..498- (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCAAGTCGGCGGGTCTCTTCGTCGGTACTGTACTCCTCGCCCTGTG CGCGGTCCAATTGGTACGGATCATCGCAGCCGTTGCGACGGGCCGCGGAA CGCTCGGCTTTGGCGAGTTGATCGCCGACACGCGCCACAACCGCCAACGG CTCGGTCTCGCCCTGCTCGTCGCGCTGTTCATCGCGACCATCGGCTGGAC CGGAACCACGCTCGGCCTCTTCCTGCTGCTCGTGTGCAGCATGCTGGTAA TGGGCGTGCGCGAACCCGGCAAGCTGATCGGCGTCGCCTTCACGACCTCG GCCGTCGTCTATCTGCTGCTCATCTACCTGCTCAACACGCGGCTGCCGCA CGGCGTCGTGGAGAAGGCCGTCGCGTCCGCGCTGGGACAGGGGAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58473:100..498-

>mRNA_P-wetherbeei_contig58473.1.1 ID=mRNA_P-wetherbeei_contig58473.1.1|Name=mRNA_P-wetherbeei_contig58473.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig58473:100..498- (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCAAGTCGGCGGGTCTCTTCGTCGGTACTGTACTCCTCGCCCTGTG
CGCGGTCCAATTGGTACGGATCATCGCAGCCGTTGCGACGGGCCGCGGAA
CGCTCGGCTTTGGCGAGTTGATCGCCGACACGCGCCACAACCGCCAACGG
CTCGGTCTCGCCCTGCTCGTCGCGCTGTTCATCGCGACCATCGGCTGGAC
CGGAACCACGCTCGGCCTCTTCCTGCTGCTCGTGTGCAGCATGCTGGTAA
TGGGCGTGCGCGAACCCGGCAAGCTGATCGGCGTCGCCTTCACGACCTCG
GCCGTCGTCTATCTGCTGCTCATCTACCTGCTCAACACGCGGCTGCCGCA
CGGCGTCGTGGAGAAGGCCGTCGCGTCCGCGCTGGGACAGGGGAGCTGA
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