mRNA_P-wetherbeei_contig5847.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5847.2.1
Unique NamemRNA_P-wetherbeei_contig5847.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Match: A0A6H5KC73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC73_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.130e-36
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 MERGKRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPERRREVRDRTCERYFDFDHPLRRYEFLAHIRGHDTTLYQDLVATGLLWGR 294
            M+ GKRGL +A RE+YFY+DL+D Q+TRT+TRAQW  LGYGPY  LP +RR EV DR CE+Y   +HP++RYEFLAHIR H+  L+ DLV TGLL  R
Sbjct:   96 MDVGKRGLRVAFRELYFYMDLIDQQMTRTMTRAQWGILGYGPYADLPLKRREEVVDRACEKYLSLEHPIQRYEFLAHIRWHNAALHDDLVQTGLLRAR 193
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BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.230e-36
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 MERGKRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPERRREVRDRTCERYFDFDHPLRRYEFLAHIRGHDTTLYQDLVATGLLWGR 294
            M+ GKRGL +A RE+YFY+DL+D Q+TRT+TRAQW  LGYGPY  LP ERR EV DR CE+Y   +HP++RYEFLAHIR H+  L+ DLV TGLL  R
Sbjct:   87 MDVGKRGLRVAFRELYFYMDLIDQQMTRTMTRAQWGILGYGPYADLPLERREEVVDRACEKYLSLEHPIQRYEFLAHIRWHNAALHDDLVQTGLLRAR 184
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BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Match: I2CPM6_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPM6_NANGC)

HSP 1 Score: 106 bits (264), Expect = 2.020e-27
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MERGKRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPERRREVRDRTCERYFDFDHPLRRYEFLAHIRGHDTTLYQDLVATGLLWGR 294
            M+ GK+G+   ARE Y+Y+ LVD  +TRT+ RAQW+ LG+GPY  L  ERR EV +R  ERY    HP+RRYEF++ I+  ++ L++DL+ + ++  R
Sbjct:    1 MDVGKKGVRAMARECYYYIQLVDYHVTRTLARAQWEILGFGPYASLSRERRMEVMERIVERYLSLKHPVRRYEFMSQIQWQNSQLHEDLINSEIILQR 98
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BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Match: A0A7S4NGM7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGM7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.670e-20
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   13 KRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPERRREVRDRTCERYFDFD--HPLRRYEFLAHIRGHDTTLYQDLVATGLLWGR 294
            K  L  ++R +Y+Y+++VD  +TRT+   QW  LG GPY  L P+ + E+ D   ERYF     HP+ RYEF AHI   +  LY DLV +GLLW R
Sbjct:  234 KLALRNSSRAIYYYMNIVDATITRTMMHTQWKILGSGPYSSLSPDHKCEILDHISERYFALSDRHPVSRYEFAAHIALKNRALYNDLVLSGLLWSR 329
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BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Match: A0A835YIJ9_9STRA (DDHD domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.030e-14
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MERGKRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPERRREV 162
            ++RGKRGL  AARE   Y  L+DVQ+TR +TRAQWD LGYGPY  LP +RR EV
Sbjct:   93 LDRGKRGLRRAARETRLYFGLIDVQITRMLTRAQWDMLGYGPYADLPFDRRVEV 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5847.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC73_9PHAE1.130e-3663.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDT4_ECTSI4.230e-3664.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
I2CPM6_NANGC2.020e-2746.94Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S4NGM7_9STRA2.670e-2045.83Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A835YIJ9_9STRA6.030e-1464.81DDHD domain-containing protein n=2 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5847contigP-wetherbeei_contig5847:2760..3424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr44005
Preferred nameSEC23IP
PFAMsDDHD,SAM_1,WWE
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K16545
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001675,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0004620,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005815,GO:0005829,GO:0005856,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006726,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007338,GO:0007610,GO:0007611,GO:0007612,GO:0007626,GO:0007632,GO:0008104,GO:0008150,GO:0008152,GO:0008306,GO:0008542,GO:0009056,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010638,GO:0010821,GO:0010822,GO:0010927,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016042,GO:0016043,GO:0016050,GO:0016063,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0019433,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0030134,GO:0030135,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0033036,GO:0033043,GO:0033363,GO:0034389,GO:0034613,GO:0042440,GO:0042441,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043324,GO:0043473,GO:0043474,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046148,GO:0046154,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0046907,GO:0048066,GO:0048069,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0052689,GO:0061024,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090114,GO:0090140,GO:0090141,GO:0097038,GO:0097708,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons2
Evalue8.65e-19
EggNOG OGsKOG2308@1|root,KOG2308@2759|Eukaryota
Descriptionphospholipase activity
Cds size294
COG categoryS
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.7250981-CDS-P-wetherbeei_contig5847:2759..28751683186865.7250981-CDS-P-wetherbeei_contig5847:2759..2875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5847 2760..2875 +
1683186865.7359815-CDS-P-wetherbeei_contig5847:3246..34241683186865.7359815-CDS-P-wetherbeei_contig5847:3246..3424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5847 3247..3424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5847.2.1prot_P-wetherbeei_contig5847.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5847 2760..3424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5847.2.1

>prot_P-wetherbeei_contig5847.2.1 ID=prot_P-wetherbeei_contig5847.2.1|Name=mRNA_P-wetherbeei_contig5847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MERGKRGLVLAAREVYFYVDLVDVQLTRTVTRAQWDFLGYGPYVGLPPER
RREVRDRTCERYFDFDHPLRRYEFLAHIRGHDTTLYQDLVATGLLWGR
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mRNA from alignment at P-wetherbeei_contig5847:2760..3424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5847.2.1 ID=mRNA_P-wetherbeei_contig5847.2.1|Name=mRNA_P-wetherbeei_contig5847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=665bp|location=Sequence derived from alignment at P-wetherbeei_contig5847:2760..3424+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGCGGGAAGCGCGGCCTGGTGCTGGCGGCTCGCGAGGTGTATTT
CTACGTGGATTTGGTTGACGTGCAGCTGACGCGAACTGTGACACGCGCCC
AGTGGGACTTTCTTGGGTGAGCTTTCCTTGAATCTTCTTGAGAATTTTAT
TTGCTTCTTCGCTCGCCTCTCTCTTTCTCTCTGTGTGGCACAACCCTCTC
TCCCTGTGTGGGTATCTTCTTTCCGTCGGAGGTGCAGCGTTGTATTTCCG
CCGCTCTGGTGTGTTCGGCGGCGGGTGCGATTTCTGCCGCCTTTGCCAAT
GTGAAAGCATTCGTTGGACGCTCTGGCCGGTAACATAACATTTTATTAGA
CGTTGCTTTCTTTCGAACACTGCTTCCACTCTAGTTTCTTTCCGTCTTCA
CACCCTACCTAGCCTTCTTTCCACCTTTCCCGTTTTCCTGTTCCTCCTTC
TCCCGCCCGTTCAAAACCATCCACAACACGCATGCAGCTACGGCCCCTAC
GTGGGACTGCCCCCGGAGCGCCGCCGTGAAGTCCGCGACCGGACCTGCGA
GCGCTACTTCGACTTCGACCATCCGCTACGCCGCTACGAGTTTCTTGCGC
ACATCCGCGGCCATGACACCACCCTTTACCAGGACCTCGTCGCCACCGGC
CTCCTATGGGGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5847:2760..3424+

>mRNA_P-wetherbeei_contig5847.2.1 ID=mRNA_P-wetherbeei_contig5847.2.1|Name=mRNA_P-wetherbeei_contig5847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig5847:2760..3424+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGCGGGAAGCGCGGCCTGGTGCTGGCGGCTCGCGAGGTGTATTT
CTACGTGGATTTGGTTGACGTGCAGCTGACGCGAACTGTGACACGCGCCC
AGTGGGACTTTCTTGGCTACGGCCCCTACGTGGGACTGCCCCCGGAGCGC
CGCCGTGAAGTCCGCGACCGGACCTGCGAGCGCTACTTCGACTTCGACCA
TCCGCTACGCCGCTACGAGTTTCTTGCGCACATCCGCGGCCATGACACCA
CCCTTTACCAGGACCTCGTCGCCACCGGCCTCCTATGGGGCCGC
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