mRNA_P-wetherbeei_contig58433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58433.1.1
Unique NamemRNA_P-wetherbeei_contig58433.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A3C0TSL3_9PROT (Glutamine synthetase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSL3_9PROT)

HSP 1 Score: 231 bits (588), Expect = 8.340e-76
Identity = 111/124 (89.52%), Postives = 122/124 (98.39%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IPFAQ+PKAKR+EVRFPD TANPYLAFAAMLMAGLDGIENKIHPG+PMDKDLYDLPPEELKEVPTVCGSLRQALE+LD DRAFLKKGNVF+D+Q++SYIELKM+EV+AFEHTPHPIEY+MYYSV
Sbjct:   47 IPFAQSPKAKRIEVRFPDPTANPYLAFAAMLMAGLDGIENKIHPGDPMDKDLYDLPPEELKEVPTVCGSLRQALESLDQDRAFLKKGNVFNDDQIDSYIELKMQEVYAFEHTPHPIEYKMYYSV 170          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A353LPE9_9PROT (Glutamine synthetase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPE9_9PROT)

HSP 1 Score: 210 bits (535), Expect = 5.210e-64
Identity = 99/124 (79.84%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IP A +P  KRVE+RFPD TANPYLAFAAMLMAGLDGIENKIHPG+PMDKDLYDLPPEEL+ VPTVCGSLR+ALE LD+DR FLK+GNVF+D+Q+N YI LKM+EV+AFEHTPHP+E++MYYSV
Sbjct:  346 IPHATSPNGKRVEIRFPDPTANPYLAFAAMLMAGLDGIENKIHPGDPMDKDLYDLPPEELQGVPTVCGSLREALENLDSDREFLKRGNVFNDDQINGYINLKMDEVYAFEHTPHPVEFEMYYSV 469          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A7V7BEZ5_9PROT (Glutamine synthetase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7V7BEZ5_9PROT)

HSP 1 Score: 202 bits (513), Expect = 6.200e-64
Identity = 96/123 (78.05%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYS 369
            IPF Q+PK+KRVEVRFPD  ANPYL FAAMLMAG+DGI+NK+HPGE MDKDLY+LPPEELKE+PTVCGSLRQALE LD DR FLK G VF D+Q++SYI+LKM EV  FEHTPHP+EY+MYYS
Sbjct:   79 IPFGQSPKSKRVEVRFPDPLANPYLGFAAMLMAGIDGIKNKLHPGEAMDKDLYELPPEELKEIPTVCGSLRQALEELDKDRDFLKAGGVFDDDQIDSYIDLKMTEVIKFEHTPHPVEYEMYYS 201          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: UPI000FAE9F3C (Glutamine synthetase n=1 Tax=Salmonella enteritidis TaxID=149539 RepID=UPI000FAE9F3C)

HSP 1 Score: 199 bits (507), Expect = 7.280e-64
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IPF  NPKAKRVEVRFPD  ANPY AFAA+LMAGLDGI+NKIHPG+PMDKDLYDLPP+ELK++PTVCGSLR+AL++LD DRAFLK G VF D+Q++S+IELKM EV  FE TPHP+E+ MYYSV
Sbjct:   19 IPFGSNPKAKRVEVRFPDPGANPYFAFAALLMAGLDGIKNKIHPGQPMDKDLYDLPPKELKKIPTVCGSLREALQSLDKDRAFLKAGGVFDDDQIDSFIELKMAEVMRFEMTPHPVEFDMYYSV 142          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: UPI0019CB631C (Glutamine synthetase n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019CB631C)

HSP 1 Score: 196 bits (499), Expect = 7.170e-63
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IP    PKAKRVEVRFPD  ANPYLAFAAMLMAGLDGIENK++PG+P+DK+LYDLPPEEL++VPTVCGSLRQA E LD DRAFLKKGNVF+D+ ++SY+ELKMEEV  FE  PHPIE+ MYYSV
Sbjct:    3 IPLGSGPKAKRVEVRFPDPGANPYLAFAAMLMAGLDGIENKLNPGDPIDKNLYDLPPEELEKVPTVCGSLRQACEELDKDRAFLKKGNVFTDDAIDSYLELKMEEVERFEMFPHPIEFDMYYSV 126          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A846N0N1_9PROT (Glutamine synthetase n=1 Tax=Rhizomicrobium palustre TaxID=189966 RepID=A0A846N0N1_9PROT)

HSP 1 Score: 207 bits (527), Expect = 8.130e-63
Identity = 98/124 (79.03%), Postives = 113/124 (91.13%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IPF  +PKAKRVEVRFPD  +NPYLAFAAMLMAGLDGIENKIHPG+P DKDLY LPPEELK++PTVCGSLR+AL +LD DR+FLKKG VFSD+ +N+YI+LKMEEV+AFEH PHPIE++MYYSV
Sbjct:  346 IPFGNSPKAKRVEVRFPDAGSNPYLAFAAMLMAGLDGIENKIHPGDPSDKDLYHLPPEELKQIPTVCGSLREALASLDADRSFLKKGGVFSDDFINAYIDLKMEEVYAFEHAPHPIEFKMYYSV 469          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A3D3WCS7_9PROT (Glutamine synthetase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3WCS7_9PROT)

HSP 1 Score: 201 bits (510), Expect = 1.110e-62
Identity = 94/123 (76.42%), Postives = 111/123 (90.24%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYS 369
            IPF  NPK KRVEVRFPD  ANPYLAF+AMLMAGLDGI NKI+PGE MDKDLYDLPPEEL ++PTVCGSLR+ALE+LD DR +L  G+VF+++Q+++YIELKMEEV+AFEHTPHP+E+QMYYS
Sbjct:  138 IPFVNNPKGKRVEVRFPDPMANPYLAFSAMLMAGLDGIRNKINPGEAMDKDLYDLPPEELNDIPTVCGSLREALESLDADREYLTSGDVFTNDQIDAYIELKMEEVYAFEHTPHPVEFQMYYS 260          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A7Y4T8H3_9PROT (Glutamine synthetase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4T8H3_9PROT)

HSP 1 Score: 206 bits (525), Expect = 1.620e-62
Identity = 98/124 (79.03%), Postives = 114/124 (91.94%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IPF   PKAKR+EVRFPD  ANPYLA+AAMLMAGLDGI+NKIHPG+PMDKDLY LPPEELK+VP VCGSLR++L+ LD +RAFLK+GNVFSD+ ++SYIELKM+EVHA+EHTPHPIE+QMYYSV
Sbjct:  346 IPFGAGPKAKRIEVRFPDPGANPYLAYAAMLMAGLDGIQNKIHPGQPMDKDLYALPPEELKDVPQVCGSLRESLDNLDRNRAFLKRGNVFSDDFIDSYIELKMQEVHAYEHTPHPIEFQMYYSV 469          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A2E6RMG6_9PROT (Glutamine synthetase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E6RMG6_9PROT)

HSP 1 Score: 206 bits (525), Expect = 1.620e-62
Identity = 98/124 (79.03%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IPFA  PK KRVEVRFPD TANPYLAF+AMLMAGLDGI+NKIHPG+PMDK+LYDLPPEELK VPTVCGSLR+ALEALD DR FLKKG+VF+D+ ++ Y+ LK EEV++FEHTPHPIE+ MYYSV
Sbjct:  346 IPFATGPKGKRVEVRFPDPTANPYLAFSAMLMAGLDGIQNKIHPGDPMDKNLYDLPPEELKNVPTVCGSLREALEALDNDRDFLKKGDVFTDDSIDGYLSLKWEEVYSFEHTPHPIEFSMYYSV 469          
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Match: A0A522VXG5_9PROT (Glutamine synthetase n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A522VXG5_9PROT)

HSP 1 Score: 206 bits (524), Expect = 2.230e-62
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDKDLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIELKMEEVHAFEHTPHPIEYQMYYSV 372
            IP+A NPKAKRVEVRFPD  ANPYLAF+AMLMAGLDGIENKIHPG+PMDK+LYDLPPEELK VPTVCGSLR+ALEAL  D AFL KG VFS + + SYIELK EEVH FEHTPHP+E+QMYYSV
Sbjct:  345 IPYATNPKAKRVEVRFPDPGANPYLAFSAMLMAGLDGIENKIHPGDPMDKNLYDLPPEELKNVPTVCGSLREALEALRADHAFLTKGEVFSADFIESYIELKYEEVHKFEHTPHPVEFQMYYSV 468          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TSL3_9PROT8.340e-7689.52Glutamine synthetase (Fragment) n=1 Tax=Alphaprote... [more]
A0A353LPE9_9PROT5.210e-6479.84Glutamine synthetase n=1 Tax=Alphaproteobacteria b... [more]
A0A7V7BEZ5_9PROT6.200e-6478.05Glutamine synthetase n=1 Tax=Alphaproteobacteria b... [more]
UPI000FAE9F3C7.280e-6476.61Glutamine synthetase n=1 Tax=Salmonella enteritidi... [more]
UPI0019CB631C7.170e-6377.42Glutamine synthetase n=1 Tax=Methyloceanibacter sp... [more]
A0A846N0N1_9PROT8.130e-6379.03Glutamine synthetase n=1 Tax=Rhizomicrobium palust... [more]
A0A3D3WCS7_9PROT1.110e-6276.42Glutamine synthetase (Fragment) n=1 Tax=Alphaprote... [more]
A0A7Y4T8H3_9PROT1.620e-6279.03Glutamine synthetase n=1 Tax=Alphaproteobacteria b... [more]
A0A2E6RMG6_9PROT1.620e-6279.03Glutamine synthetase n=2 Tax=Alphaproteobacteria T... [more]
A0A522VXG5_9PROT2.230e-6281.45Glutamine synthetase n=2 Tax=Rhodospirillales TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58433contigP-wetherbeei_contig58433:1..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314231.FP2506_06526
Preferred nameglnA
PFAMsGln-synt_C,Gln-synt_N
Model size375
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00010,RC02798
KEGG koko:K01915
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.82e-62
EggNOG OGsCOG0174@1|root,COG0174@2|Bacteria,1MUGQ@1224|Proteobacteria,2TSCR@28211|Alphaproteobacteria,2PJ4G@255475|Aurantimonadaceae
EC6.3.1.2
DescriptionGlutamine synthetase, beta-Grasp domain
Cds size375
COG categoryE
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.4640448-CDS-P-wetherbeei_contig58433:0..3751683186865.4640448-CDS-P-wetherbeei_contig58433:0..375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58433 1..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58433.1.1prot_P-wetherbeei_contig58433.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58433 1..375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58433.1.1

>prot_P-wetherbeei_contig58433.1.1 ID=prot_P-wetherbeei_contig58433.1.1|Name=mRNA_P-wetherbeei_contig58433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
IPFAQNPKAKRVEVRFPDCTANPYLAFAAMLMAGLDGIENKIHPGEPMDK
DLYDLPPEELKEVPTVCGSLRQALEALDTDRAFLKKGNVFSDEQLNSYIE
LKMEEVHAFEHTPHPIEYQMYYSV*
back to top

mRNA from alignment at P-wetherbeei_contig58433:1..375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58433.1.1 ID=mRNA_P-wetherbeei_contig58433.1.1|Name=mRNA_P-wetherbeei_contig58433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig58433:1..375+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCCATTTGCGCAAAACCCCAAGGCCAAGCGCGTTGAAGTACGCTTCCC GGATTGCACCGCCAATCCGTATCTGGCCTTTGCGGCGATGCTGATGGCCG GTCTTGACGGCATCGAAAACAAGATCCATCCGGGCGAACCCATGGACAAG GATTTGTATGATCTGCCGCCGGAAGAACTGAAAGAAGTGCCGACCGTGTG TGGCAGCCTGCGCCAGGCATTGGAAGCCCTGGATACGGATCGCGCATTCC TGAAAAAGGGAAATGTGTTCAGCGACGAACAGCTCAATTCCTATATCGAA CTGAAGATGGAAGAAGTGCATGCGTTTGAACACACCCCGCATCCGATCGA ATATCAAATGTATTACAGCGTCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58433:1..375+

>mRNA_P-wetherbeei_contig58433.1.1 ID=mRNA_P-wetherbeei_contig58433.1.1|Name=mRNA_P-wetherbeei_contig58433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig58433:1..375+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCCATTTGCGCAAAACCCCAAGGCCAAGCGCGTTGAAGTACGCTTCCC
GGATTGCACCGCCAATCCGTATCTGGCCTTTGCGGCGATGCTGATGGCCG
GTCTTGACGGCATCGAAAACAAGATCCATCCGGGCGAACCCATGGACAAG
GATTTGTATGATCTGCCGCCGGAAGAACTGAAAGAAGTGCCGACCGTGTG
TGGCAGCCTGCGCCAGGCATTGGAAGCCCTGGATACGGATCGCGCATTCC
TGAAAAAGGGAAATGTGTTCAGCGACGAACAGCTCAATTCCTATATCGAA
CTGAAGATGGAAGAAGTGCATGCGTTTGAACACACCCCGCATCCGATCGA
ATATCAAATGTATTACAGCGTCTGA
back to top