mRNA_P-wetherbeei_contig5840.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5840.3.1
Unique NamemRNA_P-wetherbeei_contig5840.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5840.3.1 vs. uniprot
Match: A0A835YHQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.570e-10
Identity = 51/131 (38.93%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:  175 AMLRARPLVRRLAAAAPPRRF-GGTKPVVQDAPYLFGEVPGHHKSEGWEGIMLATTVGT--VLFFGLYSHAPESRIKVWAREEAEARLAREDAGLPVEYGRHYASEAAQRTRQPKYVRMLGKMTEVSDEEE 558
            AMLR         A    +RF GG K   Q+  ++FGEVPGHHK EGWE I   T   +  +L FG+    P + I+ WA +EA AR   E  G  +EYG  Y+++ A R R+         M EV D++E
Sbjct:    6 AMLRPMAQAASSVALRGQKRFAGGLKIHDQNKAHVFGEVPGHHKKEGWETIWYLTLAASAVMLVFGI-GQKPVTGIEHWALDEAAARNKVEAKGGTLEYGVIYSNQPAIRFRKTD-----AGMPEVIDDDE 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5840.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YHQ5_9STRA4.570e-1038.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5840contigP-wetherbeei_contig5840:974..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr35156
PFAMsESSS
Model size889
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.29e-06
EggNOG OGs2E0B6@1|root,2S7S9@2759|Eukaryota,2XDF8@2836|Bacillariophyta
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004975.1
DescriptionESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
Cds size402
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.1456633-UTR-P-wetherbeei_contig5840:973..11501683186865.1456633-UTR-P-wetherbeei_contig5840:973..1150Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5840 974..1150 +
1683186865.1743228-UTR-P-wetherbeei_contig5840:1735..20451683186865.1743228-UTR-P-wetherbeei_contig5840:1735..2045Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5840 1736..2045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.1550462-CDS-P-wetherbeei_contig5840:1150..13691683186865.1550462-CDS-P-wetherbeei_contig5840:1150..1369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5840 1151..1369 +
1683186865.1633408-CDS-P-wetherbeei_contig5840:1552..17351683186865.1633408-CDS-P-wetherbeei_contig5840:1552..1735Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5840 1553..1735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5840.3.1prot_P-wetherbeei_contig5840.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5840 1151..1735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5840.3.1

>prot_P-wetherbeei_contig5840.3.1 ID=prot_P-wetherbeei_contig5840.3.1|Name=mRNA_P-wetherbeei_contig5840.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MLRARPLVRRLAAAAPPRRFGGTKPVVQDAPYLFGEVPGHHKSEGWEGIM
LATTVGTVLFFGLYSHAPESRIKVWAREEAEARLAREDAGLPVEYGRHYA
SEAAQRTRQPKYVRMLGKMTEVSDEEEVMEDEE*
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mRNA from alignment at P-wetherbeei_contig5840:974..2045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5840.3.1 ID=mRNA_P-wetherbeei_contig5840.3.1|Name=mRNA_P-wetherbeei_contig5840.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1072bp|location=Sequence derived from alignment at P-wetherbeei_contig5840:974..2045+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAAAACGAGCAAAAGCAGTTTGAAAAAGAAGGTGCCTCGCTCGCTGCA
AGGGGTCGCACCAGACGACGTCGTCGCTTTCTCACTTTGATTGCAAAAAT
TCCGTCTTGATGCGTCCATCAAATTTCGGGCGCGCTGGCGCACTGTCGAA
AAGATAGAAAAAGAACAAAGGAGCGCGATGTTGAGGGCACGGCCGCTGGT
GCGACGTTTGGCGGCGGCCGCACCGCCACGACGATTCGGGGGCACAAAGC
CCGTGGTTCAGGATGCTCCCTACCTCTTTGGAGAGGTGCCCGGGCATCAC
AAGAGCGAAGGATGGGAGGGCATAATGCTAGCGACGACAGTTGGGACGGT
GCTGTTCTTCGGCCTGTATAGCCACGCTCCAGAATCGCGCATCAAGGTGC
GTTTCTTGCATATCTCTGCGTTTCTTGCGTATTTCTCTCCCTGTGCTTAG
CTCTCTTACAAAGCATGGAACTATCGACAAACATTCTCAAGGCCATGGAT
AACTCATCCAACCTCAACTGGCTTTCGTGCCGCGCTTATCTCATCTCTTC
TTTGACATGGCTTCGATTCATTTCGCCAGGTTTGGGCACGGGAAGAGGCG
GAAGCCCGCCTTGCTCGCGAAGACGCCGGCCTCCCTGTGGAATACGGCCG
CCACTACGCGAGCGAGGCCGCCCAACGCACGCGTCAGCCAAAGTATGTGC
GAATGCTCGGCAAGATGACCGAGGTTTCGGACGAGGAGGAAGTGATGGAG
GATGAAGAGTGAGAAGGCGAGGGAATGGCGCACTTGCGGTCGGGCGCCGC
TGCCATACCGTTTGGCCGCGGCGTGCGACGGCAAGGGCTGAGCCTGCTGC
TGGCGATTCGCACGTGAGGCGTGGAACCGTCTCGCCGGTTTTGCTCGGCC
TTGCCGGCATCGACGAGTCGGTTGCCACGATTTATTCCTGCTTATCTCCG
GCCGAAGATAGGATTGTAGGGGGCTGCTCAGGCGGCTCTGGGCAGAAATT
TTCTGTGCTACGCGGACTGCCCGTTTCACCTGACGCTTATTACGAACGAT
GAAAATTTTCCGAACTGTTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5840:974..2045+

>mRNA_P-wetherbeei_contig5840.3.1 ID=mRNA_P-wetherbeei_contig5840.3.1|Name=mRNA_P-wetherbeei_contig5840.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5840:974..2045+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGAGGGCACGGCCGCTGGTGCGACGTTTGGCGGCGGCCGCACCGCC
ACGACGATTCGGGGGCACAAAGCCCGTGGTTCAGGATGCTCCCTACCTCT
TTGGAGAGGTGCCCGGGCATCACAAGAGCGAAGGATGGGAGGGCATAATG
CTAGCGACGACAGTTGGGACGGTGCTGTTCTTCGGCCTGTATAGCCACGC
TCCAGAATCGCGCATCAAGGTTTGGGCACGGGAAGAGGCGGAAGCCCGCC
TTGCTCGCGAAGACGCCGGCCTCCCTGTGGAATACGGCCGCCACTACGCG
AGCGAGGCCGCCCAACGCACGCGTCAGCCAAAGTATGTGCGAATGCTCGG
CAAGATGACCGAGGTTTCGGACGAGGAGGAAGTGATGGAGGATGAAGAGT
GA
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