mRNA_P-wetherbeei_contig5840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5840.1.1
Unique NamemRNA_P-wetherbeei_contig5840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: W4H3A0_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3A0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.360e-14
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   25 TRPYALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLDLLLRTADTHLENVRHHAAELRKAYEDPTYN 261
            TR  AL  YR I+R A LMPTK+R  FVR++LR E+D      +PAR++ L++ ADT L+ +    A   + +  P+Y+
Sbjct:    3 TRQQALSFYRKIYRTAGLMPTKDRTEFVRRRLRGEYDQYRHETNPARIEFLIKVADTQLDTLEIQVAHFSRVFSSPSYH 81
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: A0A1V9Z4S3_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4S3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.630e-13
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   25 TRPYALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLDLLLRTADTHLENVRHHAAELRKAYEDPTYN 261
            TR  A+  YRSI+RAA L+P+K+R  FVR++LR E++  +   +P R+  LL+ ADT L+ +        + + DP+Y+
Sbjct:    2 TRSQAISFYRSIYRAAGLLPSKDRTQFVRRRLRSEYEKYLHETNPERISFLLQVADTQLDTLLVQVEHYNQVFSDPSYH 80
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: A0A6A3SVS4_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SVS4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.980e-13
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   25 TRPYALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLDLLLRTADTHLENVRHHAAELRKAYEDPTYN 261
            TR  AL LYR+I+RAA  MPT +R+ +VR++LR EFD      +P R+  LLR A+T LE V   A  L   +  P Y+
Sbjct:    4 TRAEALRLYRAIYRAAGKMPTGDRINYVRRRLRHEFDEARGETNPERISFLLRLAETQLETVEVQAQHLTSTFSSPDYH 82
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: A0A3M6VG55_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG55_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.890e-10
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   19 AATRPYALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLD-----------LLLRTADTHLENVRHHAAELRKAYEDPTYN 261
            A+T   AL LYR+I+R A  +PT++R+ +VR++LR E+D   Q  DP R+             LLR A+T LE V+  A  LR  +  P Y+
Sbjct:    2 ASTHLEALRLYRAIYRMAGKLPTRDRINYVRRRLRHEYDEARQETDPERVTYVVVVSTKGFGFLLRVAETQLETVQVQAEHLRSIFARPDYH 93
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: M4BB95_HYAAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB95_HYAAE)

HSP 1 Score: 52.0 bits (123), Expect = 6.990e-7
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   67 AAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLDLLLRTADTHLENVRHHAAELRKAYEDPTYN 261
            AA  MPT++RV +VR++LR E++   +  DP R   LLR A+T LE V   A  L      P Y+
Sbjct:   13 AAGKMPTRDRVKYVRRRLRHEYEVAREETDPERTAFLLRVAETQLETVEVQAEHLSSILSSPDYH 77
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BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Match: A0A024GLV9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GLV9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.370e-6
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   37 ALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQIVDPARLDLLLRTADTHLENVRHHAAEL 231
            ++ LY +I RAA  MPTK+R+ F+R++LR E+D + +  +P RL  L   A T LE ++  A  L
Sbjct:    7 SMRLYCAIHRAAAKMPTKDRINFIRRRLRAEYDTHREETNPDRLRFLHALAATQLETIQIQAKHL 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
W4H3A0_9STRA8.360e-1441.77Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1V9Z4S3_9STRA6.630e-1339.24Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6A3SVS4_9STRA6.980e-1345.57Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A3M6VG55_9STRA6.890e-1039.13Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
M4BB95_HYAAE6.990e-741.54Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A024GLV9_9STRA1.370e-641.54Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5840contigP-wetherbeei_contig5840:168..733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000023556
PFAMsComplex1_LYR
Model size267
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.06e-14
EggNOG OGs2CKB3@1|root,2S75X@2759|Eukaryota,1MI8Y@121069|Pythiales
Descriptionfunction. Source PGD
Cds size267
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186865.1045814-CDS-P-wetherbeei_contig5840:167..3051683186865.1045814-CDS-P-wetherbeei_contig5840:167..305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5840 168..305 -
1683186865.1170263-CDS-P-wetherbeei_contig5840:604..7331683186865.1170263-CDS-P-wetherbeei_contig5840:604..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5840 605..733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5840.1.1prot_P-wetherbeei_contig5840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5840 168..733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5840.1.1

>prot_P-wetherbeei_contig5840.1.1 ID=prot_P-wetherbeei_contig5840.1.1|Name=mRNA_P-wetherbeei_contig5840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MGPAYAAATRPYALYLYRSIWRAAMLMPTKNRVVFVRKKLRKEFDANIQI
VDPARLDLLLRTADTHLENVRHHAAELRKAYEDPTYNG*
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mRNA from alignment at P-wetherbeei_contig5840:168..733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5840.1.1 ID=mRNA_P-wetherbeei_contig5840.1.1|Name=mRNA_P-wetherbeei_contig5840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=566bp|location=Sequence derived from alignment at P-wetherbeei_contig5840:168..733- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCCGGCATATGCTGCCGCAACGCGGCCGTACGCGCTATACCTGTA
TCGATCTATCTGGAGAGCAGCGATGCTCATGCCGACAAAGAACCGCGTAG
TGTTCGTGCGAAAAAAGCTGAGAAAGGAGGTGCGTGGAGCTCTCTAAAGT
CCCCTTGCTGCAGCAGCGCTCTCAGGCCCGATCGTTTTCGGCACAGCTTC
AATTTTTTGGTGCTTTCTTCTCCCTTTTCCGTTGCTGGTCTCGTTGACGG
GGTTGCCGCTCATCTTTGTTCCTTGGCGAATGCCCTCCTCTTTCGATAAT
TGTCCCCCGAAAAAGCCTCATGCTTCAGACGAGAAAGCATCAGCAATGTC
GTAAATCGTTCACTCGCTTCAGCCGTCTCGATCCGCTCAGAACCCCAAGC
GCTTCCCCGTCGCCTCCCGCCCTCGCAGTTCGATGCGAACATACAGATCG
TCGATCCGGCGCGGCTGGATCTCCTCCTTCGGACCGCCGACACGCACCTC
GAGAACGTGCGCCACCACGCGGCGGAGCTTAGAAAAGCGTATGAAGACCC
CACTTACAACGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5840:168..733-

>mRNA_P-wetherbeei_contig5840.1.1 ID=mRNA_P-wetherbeei_contig5840.1.1|Name=mRNA_P-wetherbeei_contig5840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig5840:168..733- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCCGGCATATGCTGCCGCAACGCGGCCGTACGCGCTATACCTGTA
TCGATCTATCTGGAGAGCAGCGATGCTCATGCCGACAAAGAACCGCGTAG
TGTTCGTGCGAAAAAAGCTGAGAAAGGAGTTCGATGCGAACATACAGATC
GTCGATCCGGCGCGGCTGGATCTCCTCCTTCGGACCGCCGACACGCACCT
CGAGAACGTGCGCCACCACGCGGCGGAGCTTAGAAAAGCGTATGAAGACC
CCACTTACAACGGGTGA
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