mRNA_P-wetherbeei_contig58390.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58390.1.1
Unique NamemRNA_P-wetherbeei_contig58390.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A523NY20_9PROT (AI-2E family transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NY20_9PROT)

HSP 1 Score: 219 bits (557), Expect = 8.820e-68
Identity = 114/167 (68.26%), Postives = 138/167 (82.63%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW +VGSVA  +M  +GRSGQV+  W+TYLLL+P+VTFYLLRDWD LVA+V +LLP+   PT+ KLA+EID VLAEFLRGQLTVM AL  IYI GL +VGL+LAF++G+ AG++SFVPYLGVIVGV  A +AA +QFHDV H+V V AVF  GQ+LEGMVLSP+LVG
Sbjct:  131 HWAEVGSVAKNIMGHIGRSGQVIAAWVTYLLLVPIVTFYLLRDWDILVANVHDLLPRAVEPTVVKLAREIDRVLAEFLRGQLTVMAALGTIYIVGLSLVGLELAFIVGLLAGVVSFVPYLGVIVGVIVAGLAALVQFHDVFHIVAVVAVFGTGQLLEGMVLSPLLVG 297
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A3D5DFZ4_9GAMM (AI-2E family transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFZ4_9GAMM)

HSP 1 Score: 202 bits (513), Expect = 2.820e-61
Identity = 105/166 (63.25%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:    4 WRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            W  VGSVA  +M+ +GRSGQ+++GW+TYLLLIPVVTFYLLRDWD LV ++  L+P+   P    L +EIDAVLAEF RGQLTVM  L ++Y+ GLW+VGLDLA ++G+ AG++SFVPYLGVIVGV  A +AA +QF DV H++GV  VF VGQ+LE MVLSP+LVG
Sbjct:  132 WDAVGSVAKNLMAHIGRSGQLLVGWVTYLLLIPVVTFYLLRDWDILVRNIYNLIPRSIEPAAVALTQEIDAVLAEFFRGQLTVMALLGSLYVIGLWVVGLDLAVIVGLLAGVVSFVPYLGVIVGVTVAGLAALVQFQDVIHILGVVVVFGVGQLLEAMVLSPLLVG 297
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: UPI0004843D1A (AI-2E family transporter n=2 Tax=Methylobacter TaxID=429 RepID=UPI0004843D1A)

HSP 1 Score: 200 bits (509), Expect = 1.100e-60
Identity = 105/167 (62.87%), Postives = 130/167 (77.84%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW++ G +A  +MSSL +SG V+  WL  LLLIPVVTFYLLRDWD LVA++ +LLP+R APT  KLA E+++VLA F+RGQ  VMLAL  IY  GLWI+GLDLA +IG+ AGL+SFVPYLG IVG+  A VAA +QF D  +L+ VA VF VGQ LEGM+L+P+LVG
Sbjct:  129 HWQKAGGIAATIMSSLSQSGAVIAAWLMNLLLIPVVTFYLLRDWDKLVANIYDLLPRRIAPTAAKLATEVNSVLAAFVRGQFYVMLALGGIYSIGLWIIGLDLALLIGMVAGLVSFVPYLGGIVGIVTACVAALVQFQDAVYLIPVAIVFAVGQALEGMLLTPLLVG 295
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A1G0JGZ2_9GAMM (AI-2E family transporter n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11 TaxID=1798301 RepID=A0A1G0JGZ2_9GAMM)

HSP 1 Score: 198 bits (503), Expect = 9.770e-60
Identity = 103/167 (61.68%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            +W+ +GSVAG+V   + +SGQ +  WL YLLLIPVVTFYLLRDWDHL+A+++ LLP++ AP I KLA + D+VL+EF+RGQL VMLAL  IY  GLWIVGL+ A +IG+ AG++SFVPYLG +VG+  A +AA +QF+DV H+V V  VF +GQ LEGMVLSP LVG
Sbjct:  134 NWQDIGSVAGQVFLKITQSGQAIFVWLAYLLLIPVVTFYLLRDWDHLLAAMQTLLPRKHAPLIKKLATDCDSVLSEFMRGQLLVMLALGIIYTIGLWIVGLEFALLIGMLAGVVSFVPYLGFVVGIIVAGIAALVQFNDVVHIVYVLIVFGIGQALEGMVLSPWLVG 300
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: G3ISG0_METTV (Uncharacterized protein n=5 Tax=Methylobacter TaxID=429 RepID=G3ISG0_METTV)

HSP 1 Score: 197 bits (500), Expect = 2.480e-59
Identity = 106/167 (63.47%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW Q G +A  +MSS+  SG V+  WL  LLLIPVVTFYLLRDWD L+A V +LLP+R APT  KLA E+D VLA F+RGQ  VMLAL  IY  GLW+ GLD+A +IG+ AGL+SFVPYLG IVG+  A VAA +QFH++  LV VA VF +GQ LEGMVL+PMLVG
Sbjct:  129 HWEQAGGIAATLMSSVSHSGGVIAEWLMNLLLIPVVTFYLLRDWDGLIAKVHDLLPRRVAPTATKLAGEVDTVLAAFVRGQFYVMLALGGIYSIGLWMTGLDVALLIGMLAGLVSFVPYLGSIVGIVMACVAALVQFHELIQLVPVAIVFIIGQSLEGMVLTPMLVG 295
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: UPI000F8DF21D (AI-2E family transporter n=1 Tax=Candidatus Methylobacter oryzae TaxID=2497749 RepID=UPI000F8DF21D)

HSP 1 Score: 195 bits (496), Expect = 9.900e-59
Identity = 102/167 (61.08%), Postives = 124/167 (74.25%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW Q G +A  +MSS+  SG V+  W+  LLLIPVVTFYLLRDWD L+  + +LLP+R   T  KLA+E+D VL+ F+RGQL VMLAL  IY  GLW+ GLDLA +IG+ AGL+SFVPYLG IVG+  A +A  +QFHD+  LV VA VF VGQ LEGMVL+PMLVG
Sbjct:  129 HWEQAGGIAASIMSSVSHSGGVIAEWMMNLLLIPVVTFYLLRDWDELIVKIHDLLPRRVTSTASKLAREVDTVLSAFVRGQLYVMLALGCIYSIGLWMTGLDLALLIGMLAGLVSFVPYLGSIVGIVTACIATLVQFHDLIELVPVAIVFIVGQSLEGMVLTPMLVG 295
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A7Y5DVG9_9GAMM (AI-2E family transporter (Fragment) n=1 Tax=Methyloglobulus sp. TaxID=2518622 RepID=A0A7Y5DVG9_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 1.120e-58
Identity = 104/165 (63.03%), Postives = 123/165 (74.55%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPML 495
            HW++ G +A  +MSS+  SG V+  WL  L+LIPVVTFYLLRDWD LVA +  LLP+R  PT  KLA E+D VL+ FLRGQ  VMLALA IY  GLW+VGLDLA +IG+ AGL+SFVPYLG IVG+  A VAA +QFHD+  LV VA VF VGQ LEG VL+P L
Sbjct:  129 HWQKAGGIAATMMSSISHSGGVIAAWLMNLVLIPVVTFYLLRDWDILVAKIYGLLPRRITPTTAKLAGEVDTVLSAFLRGQFYVMLALACIYSLGLWLVGLDLALLIGMLAGLVSFVPYLGAIVGIVVACVAALVQFHDLTQLVSVAIVFMVGQTLEGTVLTPKL 293
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: UPI0004DF823E (AI-2E family transporter n=1 Tax=Methylomarinum vadi TaxID=438855 RepID=UPI0004DF823E)

HSP 1 Score: 195 bits (496), Expect = 1.220e-58
Identity = 104/167 (62.28%), Postives = 128/167 (76.65%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW++ G +A  V+ S+ RSG V+L WL  LLLIPV+TFYLLRDWD LVA+V +L P+R A T GKLA E D VL  F+RGQ  VM+AL  IY +GLW++GL+LA +IG+ AGL+SFVPYLG IVG+ AA +AA LQFHD  +LV VA VF VGQ LEGM+L+P LVG
Sbjct:  134 HWQKAGGIAATVIGSVSRSGTVILQWLMNLLLIPVITFYLLRDWDALVANVHDLFPRRFAATAGKLASESDQVLGAFMRGQFYVMIALGLIYSTGLWLIGLELALLIGMMAGLVSFVPYLGSIVGIVAACLAALLQFHDPMYLVPVAIVFMVGQALEGMLLTPWLVG 300
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A3M1DPS8_9GAMM (AI-2E family transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DPS8_9GAMM)

HSP 1 Score: 194 bits (494), Expect = 1.930e-58
Identity = 98/167 (58.68%), Postives = 128/167 (76.65%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW+QVG   G+++     SGQ ++ WL YL+L+PVVTFYLLRDWDHLVA +REL+P+R  P + +LA+E   +LA+FLRGQLTVML L  IY  GL + G+DLA +IG+ +GL+SFVPYLGVIVG+  A +AA +Q+HD+ HL  V  VF +GQ +EGMVLSP+LVG
Sbjct:  129 HWQQVGMALGKLLIRASTSGQAIVSWLAYLVLVPVVTFYLLRDWDHLVARIRELVPRRHEPVVSRLARECHEMLAQFLRGQLTVMLILGVIYSVGLTLAGIDLALLIGMLSGLVSFVPYLGVIVGMVVAGIAALIQYHDLLHLALVGLVFGIGQAIEGMVLSPLLVG 295
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BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Match: A0A849MG01_9PROT (AI-2E family transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MG01_9PROT)

HSP 1 Score: 194 bits (494), Expect = 1.930e-58
Identity = 97/167 (58.08%), Postives = 130/167 (77.84%), Query Frame = 1 
Query:    1 HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVASVRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVGLDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVFTVGQVLEGMVLSPMLVG 501
            HW+ +G++AG+ ++ +  SGQ++L W++Y+LL+PVVTFYLLRDWD +V  VR+L+P+R      KL KE DAVL+EF RGQL VM A   IY  GLWIVGL+ + +IG+ AGL+SFVPYLG IVG+  A +AAF+QFHD+AH+V V  VF +GQ LEG+VLSP+L+G
Sbjct:  129 HWQALGNIAGKFLTKISASGQLILLWVSYILLVPVVTFYLLRDWDVIVTKVRKLIPRRYEFVSVKLVKECDAVLSEFFRGQLLVMFAQGVIYSIGLWIVGLEFSLLIGMTAGLVSFVPYLGAIVGIVVATIAAFMQFHDIAHIVYVLIVFGIGQTLEGVVLSPLLIG 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58390.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523NY20_9PROT8.820e-6868.26AI-2E family transporter n=1 Tax=Proteobacteria ba... [more]
A0A3D5DFZ4_9GAMM2.820e-6163.25AI-2E family transporter n=1 Tax=Gammaproteobacter... [more]
UPI0004843D1A1.100e-6062.87AI-2E family transporter n=2 Tax=Methylobacter Tax... [more]
A0A1G0JGZ2_9GAMM9.770e-6061.68AI-2E family transporter n=1 Tax=Gammaproteobacter... [more]
G3ISG0_METTV2.480e-5963.47Uncharacterized protein n=5 Tax=Methylobacter TaxI... [more]
UPI000F8DF21D9.900e-5961.08AI-2E family transporter n=1 Tax=Candidatus Methyl... [more]
A0A7Y5DVG9_9GAMM1.120e-5863.03AI-2E family transporter (Fragment) n=1 Tax=Methyl... [more]
UPI0004DF823E1.220e-5862.28AI-2E family transporter n=1 Tax=Methylomarinum va... [more]
A0A3M1DPS8_9GAMM1.930e-5858.68AI-2E family transporter n=1 Tax=Gammaproteobacter... [more]
A0A849MG01_9PROT1.930e-5858.08AI-2E family transporter n=1 Tax=Proteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58390contigP-wetherbeei_contig58390:5..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog697282.Mettu_1140
PFAMsAI-2E_transport
Model size501
Max annot lvl135618|Methylococcales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.06e-60
EggNOG OGsCOG0628@1|root,COG0628@2|Bacteria,1MW0B@1224|Proteobacteria,1RPVP@1236|Gammaproteobacteria,1XEVN@135618|Methylococcales
DescriptionAI-2E family transporter
Cds size501
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.8502464-CDS-P-wetherbeei_contig58390:4..5051683186864.8502464-CDS-P-wetherbeei_contig58390:4..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58390 5..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58390.1.1prot_P-wetherbeei_contig58390.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58390 5..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58390.1.1

>prot_P-wetherbeei_contig58390.1.1 ID=prot_P-wetherbeei_contig58390.1.1|Name=mRNA_P-wetherbeei_contig58390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
HWRQVGSVAGRVMSSLGRSGQVVLGWLTYLLLIPVVTFYLLRDWDHLVAS
VRELLPQRAAPTIGKLAKEIDAVLAEFLRGQLTVMLALAAIYISGLWIVG
LDLAFVIGIAAGLLSFVPYLGVIVGVAAAVVAAFLQFHDVAHLVGVAAVF
TVGQVLEGMVLSPMLVG
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mRNA from alignment at P-wetherbeei_contig58390:5..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58390.1.1 ID=mRNA_P-wetherbeei_contig58390.1.1|Name=mRNA_P-wetherbeei_contig58390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58390:5..505+ (Phaeothamnion wetherbeei SAG_119_79)
CATTGGCGCCAGGTCGGTTCGGTGGCGGGCCGCGTGATGTCGTCGCTTGG
TCGTTCGGGGCAGGTCGTGCTCGGCTGGCTGACCTATCTGTTGTTGATTC
CGGTGGTGACTTTCTACCTGCTGCGCGACTGGGATCATCTGGTGGCGTCA
GTGCGCGAGTTGCTGCCGCAGCGGGCCGCGCCGACTATCGGCAAGCTCGC
CAAGGAAATCGATGCGGTGCTGGCGGAATTCCTGCGCGGTCAGTTGACGG
TGATGCTGGCGCTGGCTGCTATCTATATCAGTGGCCTGTGGATAGTCGGC
TTGGACCTCGCCTTCGTGATCGGCATAGCGGCCGGCCTGCTCAGCTTTGT
GCCTTACTTGGGCGTGATAGTCGGCGTAGCGGCAGCGGTGGTGGCGGCAT
TCCTGCAATTTCATGACGTCGCGCACCTGGTCGGCGTAGCGGCGGTATTC
ACCGTCGGTCAAGTGCTGGAAGGCATGGTGTTATCGCCGATGCTGGTCGG
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58390:5..505+

>mRNA_P-wetherbeei_contig58390.1.1 ID=mRNA_P-wetherbeei_contig58390.1.1|Name=mRNA_P-wetherbeei_contig58390.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58390:5..505+ (Phaeothamnion wetherbeei SAG_119_79)
CATTGGCGCCAGGTCGGTTCGGTGGCGGGCCGCGTGATGTCGTCGCTTGG
TCGTTCGGGGCAGGTCGTGCTCGGCTGGCTGACCTATCTGTTGTTGATTC
CGGTGGTGACTTTCTACCTGCTGCGCGACTGGGATCATCTGGTGGCGTCA
GTGCGCGAGTTGCTGCCGCAGCGGGCCGCGCCGACTATCGGCAAGCTCGC
CAAGGAAATCGATGCGGTGCTGGCGGAATTCCTGCGCGGTCAGTTGACGG
TGATGCTGGCGCTGGCTGCTATCTATATCAGTGGCCTGTGGATAGTCGGC
TTGGACCTCGCCTTCGTGATCGGCATAGCGGCCGGCCTGCTCAGCTTTGT
GCCTTACTTGGGCGTGATAGTCGGCGTAGCGGCAGCGGTGGTGGCGGCAT
TCCTGCAATTTCATGACGTCGCGCACCTGGTCGGCGTAGCGGCGGTATTC
ACCGTCGGTCAAGTGCTGGAAGGCATGGTGTTATCGCCGATGCTGGTCGG
C
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