mRNA_P-wetherbeei_contig58389.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58389.1.1
Unique NamemRNA_P-wetherbeei_contig58389.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: UPI001BA6C513 (LysR substrate-binding domain-containing protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA6C513)

HSP 1 Score: 242 bits (617), Expect = 2.640e-78
Identity = 124/139 (89.21%), Postives = 133/139 (95.68%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            IVLRHD+ RRDG++LFEE FGWM +PDFYRQPGEPLRLATQAEPCSVRAMAVD LDAAGI+WTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLP LPSR+V+LY+KP+DPRTRQ LRTLGAAFAASA
Sbjct:  146 IVLRHDAKRRDGDVLFEEPFGWMASPDFYRQPGEPLRLATQAEPCSVRAMAVDVLDAAGIQWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPPLPSREVILYSKPSDPRTRQTLRTLGAAFAASA 284          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A4Q4KET5_BRAEL (LysR family transcriptional regulator n=45 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q4KET5_BRAEL)

HSP 1 Score: 224 bits (571), Expect = 2.500e-71
Identity = 115/140 (82.14%), Postives = 131/140 (93.57%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASAA 420
            IVLRHD+ RRDG++LFEE FGWM APDF+ +PGEPLRLATQAEPCSVRAMA++ LDAAGI WTEAFVGGGL+TIGAA+SAGLAVAALARRVAP+DTVDLGP+LGLP LPSRDV+L++K +D RTRQALRTLGAAFAA+AA
Sbjct:  146 IVLRHDAKRRDGDVLFEELFGWMAAPDFHHRPGEPLRLATQAEPCSVRAMAIEVLDAAGIAWTEAFVGGGLSTIGAALSAGLAVAALARRVAPADTVDLGPKLGLPPLPSRDVVLHSKLSDARTRQALRTLGAAFAANAA 285          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: UPI001FEE2C85 (LysR family transcriptional regulator n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI001FEE2C85)

HSP 1 Score: 221 bits (564), Expect = 2.790e-70
Identity = 115/139 (82.73%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            I LRHD+ RRDGE+LFEE+F WMG PDF R  GEPLRLATQAEPCSVRAMAV ALDAAG+ WTE FVGGG+A IGAAISAGLAVAAL RRVAPSDT DLGPRLGLP LPSR+VMLY+KPAD RTR+ALRTLGAAFAA+A
Sbjct:  146 IALRHDAKRRDGEVLFEEQFSWMGTPDFNRPTGEPLRLATQAEPCSVRAMAVGALDAAGVPWTEVFVGGGIAAIGAAISAGLAVAALGRRVAPSDTADLGPRLGLPPLPSREVMLYSKPADARTRRALRTLGAAFAAAA 284          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: UPI001BCE9933 (LysR substrate-binding domain-containing protein n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCE9933)

HSP 1 Score: 218 bits (554), Expect = 8.880e-69
Identity = 112/140 (80.00%), Postives = 129/140 (92.14%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASAA 420
            IVL+HD+ RRDGE+LF E+FGWM APDF+R+ GEPLRLATQAEPCSVRAMAVDALDAAG+ WTE FVGGGLATIGAAISAGLAVAALARRVAP+ T+DLGPRLGLP LP R+V+L++K +D RTR+ALRTLGAAF+A+AA
Sbjct:  144 IVLKHDARRRDGEVLFAEQFGWMAAPDFHRESGEPLRLATQAEPCSVRAMAVDALDAAGVPWTEVFVGGGLATIGAAISAGLAVAALARRVAPTGTIDLGPRLGLPPLPPREVILHSKLSDARTRRALRTLGAAFSANAA 283          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A525IZF8_BRASZ (LysR family transcriptional regulator n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IZF8_BRASZ)

HSP 1 Score: 212 bits (539), Expect = 1.660e-66
Identity = 111/140 (79.29%), Postives = 125/140 (89.29%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASAA 420
            IVL HD+ RR G++LFEE+FGWM APDF+ QPGEPLRLATQAEPCSVRAMA+D LDAA I WTE FVGGG+ATIGAAISAGLAVAAL RRVAPS T+DLG RLGLP LP+R+V+LY+K +D RTR+ALRTLGAAFAASAA
Sbjct:  144 IVLGHDARRRGGDILFEEQFGWMAAPDFHWQPGEPLRLATQAEPCSVRAMALDVLDAASIPWTEVFVGGGIATIGAAISAGLAVAALGRRVAPSGTIDLGSRLGLPPLPTREVILYSKLSDARTRRALRTLGAAFAASAA 283          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A1H1XET0_9BRAD (Transcriptional regulator, LysR family n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1XET0_9BRAD)

HSP 1 Score: 205 bits (521), Expect = 8.840e-64
Identity = 105/139 (75.54%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            IVLRHD+ RRDG++LF E+FGWM APDF  +PG+PLRLATQAEPCSVRAMA+ ALDAAG+ WTE FVGGG+ATIGAAISAGLAVAALARRVAP+ TVDLGPRLGLP+LP+R+V+L+++ +D R R ALR LGAAF A+A
Sbjct:  144 IVLRHDAKRRDGDVLFIEEFGWMAAPDFNHEPGQPLRLATQAEPCSVRAMAIGALDAAGVSWTEVFVGGGVATIGAAISAGLAVAALARRVAPAGTVDLGPRLGLPRLPAREVILHSRVSDSRGRGALRALGAAFKATA 282          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A5A7W6N4_9BRAD (LysR family transcriptional regulator n=1 Tax=Tardiphaga sp. P9-11 TaxID=2024614 RepID=A0A5A7W6N4_9BRAD)

HSP 1 Score: 199 bits (505), Expect = 2.330e-61
Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            IVLRHD+ RRDGE+L EE+FGW+ APDF   PGEPLRLATQAEPCSVRAMAV ALDAAGI WTE FVGGG+ATIGAAISAGLA+ AL RRVAP+ +VDLGPRL LP+LP+ DV+LY+  AD   R ALRTLGAAF A+A
Sbjct:  144 IVLRHDARRRDGEVLLEEEFGWIAAPDFNHPPGEPLRLATQAEPCSVRAMAVGALDAAGIPWTEVFVGGGVATIGAAISAGLAIGALVRRVAPAGSVDLGPRLALPKLPNCDVILYSNLADAGARGALRTLGAAFRANA 282          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: UPI0019C1D73D (LysR family transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019C1D73D)

HSP 1 Score: 198 bits (503), Expect = 4.680e-61
Identity = 105/139 (75.54%), Postives = 115/139 (82.73%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            IVLRHD  RRDGE+L EE+FGWM APDF   PGEPLRLATQAEPC+VR MAV ALDAAGI WTE FVGGG+AT+GAAISAGLAVAAL RRVAP+  VDLGPRLGLP+LP  + ML++   DPR R ALRTLGAAF A A
Sbjct:  144 IVLRHDVRRRDGEVLLEEQFGWMAAPDFNCPPGEPLRLATQAEPCNVRGMAVGALDAAGIPWTEVFVGGGVATLGAAISAGLAVAALVRRVAPAGCVDLGPRLGLPKLPGCEAMLHSNLTDPRARGALRTLGAAFRAGA 282          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A5C5SWA2_9HYPH (LysR family transcriptional regulator n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5SWA2_9HYPH)

HSP 1 Score: 198 bits (504), Expect = 5.580e-61
Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAAS 414
            IVLRHD  RRDG++L +E FGWM APDF  +PGEPLRLATQAEPCSVR+MAV ALD AGI WTE FVGGG+ TIGAAISAGLAVAAL RRVAP+ T+D+GPRLGLP LPSRDV+LYA  AD + RQALRTL AA  A+
Sbjct:  144 IVLRHDHQRRDGDVLLKEVFGWMAAPDFAYRPGEPLRLATQAEPCSVRSMAVAALDGAGIPWTEVFVGGGVTTIGAAISAGLAVAALGRRVAPAGTIDVGPRLGLPPLPSRDVVLYANVADRQARQALRTLSAAIRAT 281          
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Match: A0A0S1XYV7_9BORD (LysR family transcriptional regulator n=4 Tax=Alcaligenaceae TaxID=506 RepID=A0A0S1XYV7_9BORD)

HSP 1 Score: 196 bits (499), Expect = 2.060e-60
Identity = 103/139 (74.10%), Postives = 115/139 (82.73%), Query Frame = 1
Query:    1 IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAMAVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLGPRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASA 417
            +VLRHDS R DGE+L EE FGWMGAPDF   PG+PLRLATQAEPCSVRAMAVDAL  A + WTE FVGGG++TIGAA+SAGLAVAAL RRVAP+ TVDLGPRLGLP LPSRDV+L+  P D + R ALR LGAA  A+A
Sbjct:  145 VVLRHDSRRLDGELLLEEGFGWMGAPDFEWTPGQPLRLATQAEPCSVRAMAVDALAQASVPWTEVFVGGGVSTIGAAVSAGLAVAALGRRVAPAGTVDLGPRLGLPALPSRDVVLHTGPTDAQARGALRALGAAIRATA 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58389.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BA6C5132.640e-7889.21LysR substrate-binding domain-containing protein n... [more]
A0A4Q4KET5_BRAEL2.500e-7182.14LysR family transcriptional regulator n=45 Tax=Bra... [more]
UPI001FEE2C852.790e-7082.73LysR family transcriptional regulator n=1 Tax=Brad... [more]
UPI001BCE99338.880e-6980.00LysR substrate-binding domain-containing protein n... [more]
A0A525IZF8_BRASZ1.660e-6679.29LysR family transcriptional regulator n=1 Tax=Brad... [more]
A0A1H1XET0_9BRAD8.840e-6475.54Transcriptional regulator, LysR family n=1 Tax=Bra... [more]
A0A5A7W6N4_9BRAD2.330e-6175.54LysR family transcriptional regulator n=1 Tax=Tard... [more]
UPI0019C1D73D4.680e-6175.54LysR family transcriptional regulator n=1 Tax=Tard... [more]
A0A5C5SWA2_9HYPH5.580e-6175.36LysR family transcriptional regulator n=1 Tax=Reyr... [more]
A0A0S1XYV7_9BORD2.060e-6074.10LysR family transcriptional regulator n=4 Tax=Alca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58389contigP-wetherbeei_contig58389:82..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1297865.APJD01000036_gene1448
PFAMsHTH_1,LysR_substrate
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.65e-75
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1MVKF@1224|Proteobacteria,2U0G8@28211|Alphaproteobacteria,3JRN4@41294|Bradyrhizobiaceae
DescriptionTranscriptional regulator, LysR family
Cds size423
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.7095811-CDS-P-wetherbeei_contig58389:81..5041683186864.7095811-CDS-P-wetherbeei_contig58389:81..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58389 82..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58389.1.1prot_P-wetherbeei_contig58389.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58389 82..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58389.1.1

>prot_P-wetherbeei_contig58389.1.1 ID=prot_P-wetherbeei_contig58389.1.1|Name=mRNA_P-wetherbeei_contig58389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
IVLRHDSYRRDGEMLFEEKFGWMGAPDFYRQPGEPLRLATQAEPCSVRAM
AVDALDAAGIEWTEAFVGGGLATIGAAISAGLAVAALARRVAPSDTVDLG
PRLGLPQLPSRDVMLYAKPADPRTRQALRTLGAAFAASAA*
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mRNA from alignment at P-wetherbeei_contig58389:82..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58389.1.1 ID=mRNA_P-wetherbeei_contig58389.1.1|Name=mRNA_P-wetherbeei_contig58389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig58389:82..504- (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGCTGCGCCACGATTCCTATCGCCGCGACGGCGAAATGCTGTTCGA AGAGAAATTCGGCTGGATGGGGGCACCTGATTTTTATCGGCAGCCCGGCG AGCCGCTACGGCTGGCGACCCAAGCCGAGCCTTGCAGCGTTCGCGCCATG GCGGTCGATGCGCTCGATGCTGCCGGCATCGAATGGACCGAGGCATTCGT CGGCGGCGGGCTCGCAACCATCGGGGCAGCGATATCCGCAGGCCTTGCGG TGGCGGCCCTGGCGCGCCGGGTCGCGCCATCGGACACCGTCGATCTCGGA CCGCGGCTTGGTCTGCCGCAATTGCCCTCCCGCGACGTCATGCTCTACGC GAAACCTGCCGATCCCCGCACGCGGCAGGCACTGCGCACCCTCGGCGCAG CCTTCGCGGCGAGCGCGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58389:82..504-

>mRNA_P-wetherbeei_contig58389.1.1 ID=mRNA_P-wetherbeei_contig58389.1.1|Name=mRNA_P-wetherbeei_contig58389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig58389:82..504- (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGCTGCGCCACGATTCCTATCGCCGCGACGGCGAAATGCTGTTCGA
AGAGAAATTCGGCTGGATGGGGGCACCTGATTTTTATCGGCAGCCCGGCG
AGCCGCTACGGCTGGCGACCCAAGCCGAGCCTTGCAGCGTTCGCGCCATG
GCGGTCGATGCGCTCGATGCTGCCGGCATCGAATGGACCGAGGCATTCGT
CGGCGGCGGGCTCGCAACCATCGGGGCAGCGATATCCGCAGGCCTTGCGG
TGGCGGCCCTGGCGCGCCGGGTCGCGCCATCGGACACCGTCGATCTCGGA
CCGCGGCTTGGTCTGCCGCAATTGCCCTCCCGCGACGTCATGCTCTACGC
GAAACCTGCCGATCCCCGCACGCGGCAGGCACTGCGCACCCTCGGCGCAG
CCTTCGCGGCGAGCGCGGCCTGA
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