mRNA_P-wetherbeei_contig58384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58384.1.1
Unique NamemRNA_P-wetherbeei_contig58384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: A0A0J7YPP3_BETVV (SH2_2 domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J7YPP3_BETVV)

HSP 1 Score: 71.2 bits (173), Expect = 2.540e-13
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   28 LTTETCYPPGTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKENAARQQSSSSRR 318
            +  E C+  GTE E++  L+DEK +EPKRIPY+   +  HPG F   +LP   +  E  ++TP GYR  +      ++++ + K +  +Q    SR+
Sbjct:   22 IVQEKCFRYGTEEEIDRLLKDEKEDEPKRIPYFFGYSSKHPGLFVFSFLPSKHVVHELVKLTPKGYRFQKRNFTKASQIIAYIKSDFVKQLKERSRK 118
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: A0A151ZDL6_9MYCE (Transcription elongation factor spt6 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL6_9MYCE)

HSP 1 Score: 67.0 bits (162), Expect = 1.060e-10
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKENAA 291
            GT+ E+++ +R EK N PKRIPYY  +   HPG+  L ++P  T R E   +   G+ + ++   S  +L+K+FK N A
Sbjct: 1330 GTQEEIDQLIRQEKINNPKRIPYYFGINQSHPGFVTLYHVPTSTPRHEHIFIKSDGFLLRKKLFHSLNDLIKYFKTNYA 1408
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: UPI00092F16DD (transcription elongation factor SPT6-like isoform X13 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F16DD)

HSP 1 Score: 52.8 bits (125), Expect = 1.070e-5
Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKEN 285
            G++AEV+E L+ EK   PKRIPY   ++  HPG F L Y+       E   + P G++  ++   +  +L+ +F+ +
Sbjct: 1289 GSKAEVDELLKQEKEEYPKRIPYGFGISHEHPGTFILSYIRSTKTHHEFIGIHPKGFKFRKQIFENLEQLVTYFQNH 1365
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: A0A4P1RLE1_LUPAN (S1 motif domain-containing protein n=15 Tax=Lupinus TaxID=3869 RepID=A0A4P1RLE1_LUPAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.070e-5
Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKEN 285
            G++AEV+E L+ EK   PKRIPY   ++  HPG F L Y+       E   + P G++  ++   +  +L+ +F+ +
Sbjct: 1290 GSKAEVDELLKQEKEEYPKRIPYGFGISHEHPGTFILSYIRSTKTHHEFIGIHPKGFKFRKQIFENLEQLVTYFQNH 1366
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: UPI00128FC3EC (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00128FC3EC)

HSP 1 Score: 49.3 bits (116), Expect = 3.150e-5
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKF 273
            GT+AEV+E L+ EK   PKRIPY   ++  HPG F L Y+       E   + P G++  ++  ++  +L+ +
Sbjct:   47 GTKAEVDELLKLEKEEYPKRIPYGFGISYEHPGTFILSYIRSTNPHHEFIGIHPKGFKFRKQIFQNVEQLVAY 119
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: S8CXC7_9LAMI (S1 motif domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CXC7_9LAMI)

HSP 1 Score: 50.8 bits (120), Expect = 5.020e-5
Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKEN 285
            G++AE++E LR+EKG  P RI Y   ++  HPG F L Y+       E   + P G++  +        L+ +F+ +
Sbjct: 1341 GSKAEIDERLREEKGENPMRILYCFGVSHEHPGNFILTYIRSSNPHHEYVGLDPKGFKFRKRMFEDIDRLVSYFQRH 1417
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BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Match: A0A834TV69_9FABA (Transcription elongation factor SPT6-like protein isoform X1 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TV69_9FABA)

HSP 1 Score: 50.8 bits (120), Expect = 5.060e-5
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   55 GTEAEVEETLRDEKGNEPKRIPYYLLMAPGHPGYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKEN 285
            G++AEV++ L+ EK   PKRI Y   ++  HPG F L Y+    +R E   + P G++  ++   +  +L+ +F+ +
Sbjct: 1197 GSKAEVDQLLKLEKEEYPKRIVYGFAISFEHPGTFILSYIRSTNLRHEFIGIHPKGFKFRKQIFENVEQLIAYFQNH 1273
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0J7YPP3_BETVV2.540e-1334.02SH2_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A151ZDL6_9MYCE1.060e-1037.97Transcription elongation factor spt6 n=1 Tax=Tiegh... [more]
UPI00092F16DD1.070e-532.47transcription elongation factor SPT6-like isoform ... [more]
A0A4P1RLE1_LUPAN1.070e-532.47S1 motif domain-containing protein n=15 Tax=Lupinu... [more]
UPI00128FC3EC3.150e-534.25hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
S8CXC7_9LAMI5.020e-531.17S1 motif domain-containing protein (Fragment) n=1 ... [more]
A0A834TV69_9FABA5.060e-531.17Transcription elongation factor SPT6-like protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58384contigP-wetherbeei_contig58384:84..401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQN5
Preferred nameSPT6
PFAMsDLD,HHH_7,HTH_44,S1,SH2_2,SPT6_acidic,YqgF
Model size318
Max annot lvl2759|Eukaryota
KEGG koko:K11292
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000083,GO:0000122,GO:0000183,GO:0000228,GO:0000278,GO:0000414,GO:0000429,GO:0000430,GO:0000433,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000988,GO:0000990,GO:0000991,GO:0001073,GO:0001178,GO:0001672,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005739,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007154,GO:0007584,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009299,GO:0009605,GO:0009607,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010847,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016584,GO:0016973,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0030447,GO:0030466,GO:0030702,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031440,GO:0031445,GO:0031454,GO:0031491,GO:0031497,GO:0031503,GO:0031554,GO:0031564,GO:0031618,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032269,GO:0032270,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033554,GO:0034243,GO:0034502,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035065,GO:0035067,GO:0035327,GO:0036170,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042393,GO:0042594,GO:0042789,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043254,GO:0043618,GO:0043620,GO:0043933,GO:0043954,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044382,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0044877,GO:0045013,GO:0045014,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051569,GO:0051570,GO:0051574,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060260,GO:0060303,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070827,GO:0070887,GO:0071103,GO:0071166,GO:0071168,GO:0071426,GO:0071427,GO:0071440,GO:0071441,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071931,GO:0080090,GO:0080134,GO:0090033,GO:0090304,GO:0097355,GO:0097659,GO:0098687,GO:0140110,GO:1900049,GO:1900050,GO:1900109,GO:1900111,GO:1900112,GO:1900114,GO:1900428,GO:1900430,GO:1900434,GO:1900436,GO:1900443,GO:1900445,GO:1901360,GO:1901362,GO:1901576,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1902680,GO:1903047,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251,GO:2001252
Exons1
Evalue6.92e-17
EggNOG OGsCOG2183@1|root,KOG1856@2759|Eukaryota
Descriptionobsolete transcription factor activity, core RNA polymerase II binding
Cds size318
COG categoryK
BRITEko00000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.652812-CDS-P-wetherbeei_contig58384:83..4011683186864.652812-CDS-P-wetherbeei_contig58384:83..401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58384 84..401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58384.1.1prot_P-wetherbeei_contig58384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58384 84..401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58384.1.1

>prot_P-wetherbeei_contig58384.1.1 ID=prot_P-wetherbeei_contig58384.1.1|Name=mRNA_P-wetherbeei_contig58384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MPLRSPLPPLTTETCYPPGTEAEVEETLRDEKGNEPKRIPYYLLMAPGHP
GYFELMYLPGGTIRKERFEVTPAGYRMGRETLRSCTELLKFFKENAARQQ
SSSSRR
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mRNA from alignment at P-wetherbeei_contig58384:84..401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58384.1.1 ID=mRNA_P-wetherbeei_contig58384.1.1|Name=mRNA_P-wetherbeei_contig58384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58384:84..401- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACTGCGATCGCCGTTGCCGCCCCTGACTACTGAAACTTGCTATCC
TCCAGGGACGGAAGCGGAGGTGGAGGAGACGCTGCGCGACGAGAAGGGCA
ACGAGCCGAAGCGTATCCCCTACTACCTCCTAATGGCGCCGGGCCACCCG
GGCTACTTCGAGCTTATGTATCTGCCGGGCGGCACCATCCGGAAGGAGCG
CTTCGAGGTGACGCCGGCGGGCTACCGCATGGGGCGGGAGACGCTGCGCA
GCTGCACCGAGCTGCTCAAGTTTTTCAAGGAAAACGCCGCCAGGCAGCAG
TCGTCGTCCAGCCGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58384:84..401-

>mRNA_P-wetherbeei_contig58384.1.1 ID=mRNA_P-wetherbeei_contig58384.1.1|Name=mRNA_P-wetherbeei_contig58384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58384:84..401- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACTGCGATCGCCGTTGCCGCCCCTGACTACTGAAACTTGCTATCC
TCCAGGGACGGAAGCGGAGGTGGAGGAGACGCTGCGCGACGAGAAGGGCA
ACGAGCCGAAGCGTATCCCCTACTACCTCCTAATGGCGCCGGGCCACCCG
GGCTACTTCGAGCTTATGTATCTGCCGGGCGGCACCATCCGGAAGGAGCG
CTTCGAGGTGACGCCGGCGGGCTACCGCATGGGGCGGGAGACGCTGCGCA
GCTGCACCGAGCTGCTCAAGTTTTTCAAGGAAAACGCCGCCAGGCAGCAG
TCGTCGTCCAGCCGGCGC
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