mRNA_P-wetherbeei_contig58373.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58373.1.1
Unique NamemRNA_P-wetherbeei_contig58373.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58373.1.1 vs. uniprot
Match: UPI001AE8A0F5 (hypothetical protein n=1 Tax=Mariniflexile gromovii TaxID=362523 RepID=UPI001AE8A0F5)

HSP 1 Score: 55.1 bits (131), Expect = 1.180e-6
Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   16 RREDPKTNYPAMANLIVAVIL--IALLRYK--NREDALAVLGGKPEHYACIMVNNELVETDSTIVFVGKTADYIFLHDRTQHRNQIIKMADVTDY 288
            R ++ K+ +     + V  I+  I  + Y   N   A ++L GK E+Y    +NN+L+ET+S ++F+G+T +Y+FL       N I    D++++
Sbjct:  171 RFQNSKSKFNPRIQIFVYFIMTIIGFIVYSDINLNKADSILNGKSEYYVKFEINNQLIETNSKLLFIGQTNNYVFLRKIDSRENHIYNKKDISEF 265
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BLAST of mRNA_P-wetherbeei_contig58373.1.1 vs. uniprot
Match: A0A437UD76_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium columnare TaxID=996 RepID=A0A437UD76_9FLAO)

HSP 1 Score: 51.2 bits (121), Expect = 2.570e-5
Identity = 21/73 (28.77%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   73 ILIALLRYKNREDALAVLGGKPEHYACIMVNNELVETDSTIVFVGKTADYIFLHDRTQHRNQIIKMADVTDYK 291
            +L  L+  K   D   ++  K ++     + N+++++D T +F+G+T +YIF HD+ +  N I K++D+ + K
Sbjct:  173 LLYFLIIGKTYIDYREIIDNKTKNQISFQIENKIIKSDKTFLFIGQTKNYIFFHDKIKKVNSIYKISDIKNLK 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58373.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001AE8A0F51.180e-629.47hypothetical protein n=1 Tax=Mariniflexile gromovi... [more]
A0A437UD76_9FLAO2.570e-528.77Uncharacterized protein n=1 Tax=Flavobacterium col... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58373contigP-wetherbeei_contig58373:4..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size318
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.5536468-CDS-P-wetherbeei_contig58373:3..3211683186864.5536468-CDS-P-wetherbeei_contig58373:3..321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58373 4..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58373.1.1prot_P-wetherbeei_contig58373.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58373 4..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58373.1.1

>prot_P-wetherbeei_contig58373.1.1 ID=prot_P-wetherbeei_contig58373.1.1|Name=mRNA_P-wetherbeei_contig58373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
SVERKRREDPKTNYPAMANLIVAVILIALLRYKNREDALAVLGGKPEHYA
CIMVNNELVETDSTIVFVGKTADYIFLHDRTQHRNQIIKMADVTDYKTEQ
ISRPD*
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mRNA from alignment at P-wetherbeei_contig58373:4..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58373.1.1 ID=mRNA_P-wetherbeei_contig58373.1.1|Name=mRNA_P-wetherbeei_contig58373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58373:4..321+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGTTGAACGAAAAAGGAGAGAGGACCCTAAAACGAATTACCCTGCTAT
GGCAAATTTGATTGTAGCCGTTATTTTAATAGCACTCCTGCGCTATAAAA
ATAGAGAAGACGCGCTCGCTGTTCTGGGAGGCAAGCCAGAGCATTACGCA
TGCATAATGGTTAATAACGAGTTAGTAGAAACTGACTCTACAATAGTGTT
CGTAGGAAAAACGGCCGATTATATTTTCTTGCATGACCGTACACAACATC
GGAATCAAATAATTAAAATGGCCGATGTAACTGATTACAAAACAGAGCAA
ATTTCACGACCAGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58373:4..321+

>mRNA_P-wetherbeei_contig58373.1.1 ID=mRNA_P-wetherbeei_contig58373.1.1|Name=mRNA_P-wetherbeei_contig58373.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig58373:4..321+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGTTGAACGAAAAAGGAGAGAGGACCCTAAAACGAATTACCCTGCTAT
GGCAAATTTGATTGTAGCCGTTATTTTAATAGCACTCCTGCGCTATAAAA
ATAGAGAAGACGCGCTCGCTGTTCTGGGAGGCAAGCCAGAGCATTACGCA
TGCATAATGGTTAATAACGAGTTAGTAGAAACTGACTCTACAATAGTGTT
CGTAGGAAAAACGGCCGATTATATTTTCTTGCATGACCGTACACAACATC
GGAATCAAATAATTAAAATGGCCGATGTAACTGATTACAAAACAGAGCAA
ATTTCACGACCAGACTGA
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