mRNA_P-wetherbeei_contig58356.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58356.1.1
Unique NamemRNA_P-wetherbeei_contig58356.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58356.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58356contigP-wetherbeei_contig58356:2..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog655815.ZPR_3700
Model size468
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.82e-09
EggNOG OGs2E9M8@1|root,333TX@2|Bacteria,4NV2R@976|Bacteroidetes,1I5AM@117743|Flavobacteriia
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.4740026-CDS-P-wetherbeei_contig58356:1..4691683186864.4740026-CDS-P-wetherbeei_contig58356:1..469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58356 2..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58356.1.1prot_P-wetherbeei_contig58356.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58356 2..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58356.1.1

>prot_P-wetherbeei_contig58356.1.1 ID=prot_P-wetherbeei_contig58356.1.1|Name=mRNA_P-wetherbeei_contig58356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
LVVFFLTGWFFTACETQSCGCVNYDLGIEVVIEDAAGKDLLDPSTDGYFN
EQNITMLYEIKGKLENYGSMVGGDNPKGFTIYPNGDRYVLSLFSNPTAGS
KVVTLLRIKDHPDVKLVTKVNGENGKRIEKIWYKDQLVWPVSKNDYSRTV
TVTID*
back to top

mRNA from alignment at P-wetherbeei_contig58356:2..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58356.1.1 ID=mRNA_P-wetherbeei_contig58356.1.1|Name=mRNA_P-wetherbeei_contig58356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig58356:2..469+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTTGTTTTCTTCCTGACAGGATGGTTCTTCACAGCATGTGAAACTCA
ATCCTGCGGCTGTGTAAATTATGATTTGGGCATTGAAGTTGTAATCGAAG
ATGCAGCGGGTAAAGATCTTCTTGATCCGTCCACAGATGGTTATTTTAAC
GAACAGAATATAACCATGCTTTACGAAATCAAAGGCAAGCTTGAAAACTA
CGGATCAATGGTTGGTGGAGATAATCCGAAAGGGTTCACCATATATCCCA
ACGGGGATCGGTATGTGTTAAGTTTATTCTCCAATCCAACCGCGGGGAGT
AAAGTTGTTACGCTACTCAGGATAAAAGATCACCCGGATGTAAAGCTGGT
GACAAAAGTTAATGGCGAGAATGGTAAGCGCATAGAAAAAATCTGGTATA
AAGATCAGTTAGTCTGGCCAGTATCCAAAAATGATTATTCCCGAACTGTT
ACGGTGACGATCGACTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig58356:2..469+

>mRNA_P-wetherbeei_contig58356.1.1 ID=mRNA_P-wetherbeei_contig58356.1.1|Name=mRNA_P-wetherbeei_contig58356.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig58356:2..469+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTTGTTTTCTTCCTGACAGGATGGTTCTTCACAGCATGTGAAACTCA
ATCCTGCGGCTGTGTAAATTATGATTTGGGCATTGAAGTTGTAATCGAAG
ATGCAGCGGGTAAAGATCTTCTTGATCCGTCCACAGATGGTTATTTTAAC
GAACAGAATATAACCATGCTTTACGAAATCAAAGGCAAGCTTGAAAACTA
CGGATCAATGGTTGGTGGAGATAATCCGAAAGGGTTCACCATATATCCCA
ACGGGGATCGGTATGTGTTAAGTTTATTCTCCAATCCAACCGCGGGGAGT
AAAGTTGTTACGCTACTCAGGATAAAAGATCACCCGGATGTAAAGCTGGT
GACAAAAGTTAATGGCGAGAATGGTAAGCGCATAGAAAAAATCTGGTATA
AAGATCAGTTAGTCTGGCCAGTATCCAAAAATGATTATTCCCGAACTGTT
ACGGTGACGATCGACTAG
back to top