mRNA_P-wetherbeei_contig58354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: UPI000B4A6D63 (hypothetical protein n=1 Tax=Ideonella sp. A 288 TaxID=1962181 RepID=UPI000B4A6D63) HSP 1 Score: 74.7 bits (182), Expect = 1.870e-13 Identity = 54/133 (40.60%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 10 LALAARAAAWKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIWNALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAAAAA 408
L +AA W+ +SG +F AL L+W A + L G LL ++ G LAM + A AA + +V A A+ ++LG VPA G AV +WLP H F+YILG GFFIT LAAAAA
Sbjct: 12 LLVAAALRPWRAVAASGPPWPWFAWWAALPLMWGADRYAAMPIVQPLSGAALLVMLAGWPLAMPALAAAALVTMAVGGLDAVQALHRFVWLGAVPATLALAGGAAVRRWLPHHMFIYILGRGFFITMLAAAAA 144
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: Q7NXN7_CHRVO (Probable integral membrane protein n=11 Tax=Chromobacterium violaceum TaxID=536 RepID=Q7NXN7_CHRVO) HSP 1 Score: 73.6 bits (179), Expect = 1.060e-12 Identity = 61/169 (36.09%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 7 VLALAARAAAWKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIWNAL----FLGVVPALATDLGRRAVAQW-LPAHPFVYILGNGFFITGLAAAAAQLCAAALLLAHGPATDSALLAQYAPFMLLI 498
+LALAA W+ A AL+ + G + LW+ R GL+ L+G LLTLM+GP LA+ + A+A LA+ H W+AL L +PA+A G +A+ LPAH F+Y+ NGF G + AA LC L A G LL + P+ L+
Sbjct: 53 LLALAALRVRWR-ALDPAALNAWMGACVLDLALWLLRGGLQPGLSFHLLGAALLTLMMGPWLALLALAVAQLALAAAGHAD-----WSALGLNWLLTPLPAVAVTAGMLELARRRLPAHFFIYVFVNGFLAGGASLLAAALCGVLALGAAGAYPWDGLLGEALPYYFLL 215
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A1D9H1C1_9BURK (Uncharacterized protein n=2 Tax=unclassified Cupriavidus TaxID=2640874 RepID=A0A1D9H1C1_9BURK) HSP 1 Score: 72.0 bits (175), Expect = 2.490e-12 Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 37 WKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWS-------AALAATILA-SVFHQSASVAIW-NALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAA 399
W+ H + G + ALLW RA GL LQL G LLT + G LA+ S + L LA S + + A+W +++G+ PAL + + A+ +WLP HPF++ILG+G+F GLAA
Sbjct: 26 WRPLAHDDLQHGWLGALVLTALLWTVRATLPGGLVLQLTGAALLTTLFGLPLALLSLFAVDVISLLGLAFLAGSGWQEIGWAALWPRFVWMGLAPALLAAVLQAAMRRWLPHHPFIFILGHGYFSAGLAA 155
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A7Y5PK16_9BURK (Uncharacterized protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A7Y5PK16_9BURK) HSP 1 Score: 70.1 bits (170), Expect = 1.080e-11 Identity = 61/154 (39.61%), Postives = 79/154 (51.30%), Query Frame = 1
Query: 10 LALAARAAAWKQ-AFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIWNALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAAAAAQLCAAALLLAHGPATDSALL 468
LALAA W+ A +G + LAL++LW A + L G PLL L+ G AM + AA + A + +A A+ ++LGVVP G V +WLP H FVYILG GF +T LAAAAA +AAL A +S LL
Sbjct: 12 LALAAALRPWRALAPGAGPPWPWVVTGLALSVLWSADRWSHSPIVQPLSGAPLLVLLAGWPAAMLALVPAALLTAWLGDLAAVQAVQRLVWLGVVPGTLALAGGLCVRRWLPRHLFVYILGRGFGVTWLAAAAAGALSAALHDAPAGLAESELL 165
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: UPI0010A3E257 (energy-coupling factor ABC transporter permease n=1 Tax=Herbaspirillum sp. ST 5-3 TaxID=2567936 RepID=UPI0010A3E257) HSP 1 Score: 70.1 bits (170), Expect = 1.230e-11 Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 1
Query: 22 ARAAAWKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIW-----NALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFF 381
AR+ W++ GA + + L LLW G G+ALQL+GVPL LM G LA + L+ ++AS Q +W N L L V PA + RA ++LP H F+Y+LGNGFF
Sbjct: 28 ARSTQWQRVDRIGAFSAWCFFVIVLPLLWRMDVRIGNGIALQLLGVPLFVLMFGRPLA--TVGLSLAVIASTALQDG---LWGNIGLNILMLAVFPAWCGEAVMRATRRYLPHHIFIYLLGNGFF 147
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A2N2AK93_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 TaxID=2013791 RepID=A0A2N2AK93_9GAMM) HSP 1 Score: 68.9 bits (167), Expect = 6.920e-11 Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 1
Query: 7 VLALAARAAAWKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIW-----NALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAAAAAQLCAAALLLAHGPATDSALLAQYAPFM 489
+ A A R A W++ L+ G + L L+W +A GL L+G L LM G W+ A A L W NAL +G +P LAT + R + LP H FVYI+ N +F GLA A ++ LL+ GP +L Y PF+
Sbjct: 80 LFAAAIRTAPWRRYRDKDLLNVLLGSCVLLLLIWSLKAGVKPGLTFHLLGGTLFMLMFG-----WAVAFIAMSLVLAGGVLNGAVAWQGFALNALVMGAIPILATQVVLRLAVKHLPHHFFVYIIVNAYFCAGLAMALTVSTSSFLLVMLGPYRLDTVLHDYLPFV 240
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A1G6RKJ5_9BURK (Uncharacterized membrane protein n=2 Tax=Cupriavidus sp. YR651 TaxID=1855315 RepID=A0A1G6RKJ5_9BURK) HSP 1 Score: 67.0 bits (162), Expect = 2.210e-10 Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 37 WKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATI----LASVFHQSASVAIWNA-----LFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAA 399
W+ H + GG + LALLW ARA GL +QL+G L + G LA+ S + I LA + Q + W+ ++LG++PAL + + A+ LP HPF++ILG+G+F GLAA
Sbjct: 37 WQLLRRDALQHAWLGGLVLLALLWTARATLTGGLVIQLMGATLAVTLFGLPLALVSMLIVDGISLLGLAYLAGQGWAQVEWSTFWPRFVWLGMLPALLSAGLQGAMRHLLPRHPFIFILGHGYFAAGLAA 166
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A375GB07_9BURK (Uncharacterized protein n=8 Tax=Cupriavidus TaxID=106589 RepID=A0A375GB07_9BURK) HSP 1 Score: 66.6 bits (161), Expect = 2.950e-10 Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 37 WKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFH------QSASVAIWNALF-----LGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAAAAAQLCAAA 426
W+ H + G + +ALLW RA GL +QL+G L+ + G LA+ S L L S+F S ++ W +L+ L +VPAL + + + +WLP HPFV+ILG+G+F GLAA A AA
Sbjct: 31 WRLLQRDALQHAWLGAMVLVALLWTVRATLVGGLVIQLLGATLMVTLFGLPLALLS--LFVVDLVSLFGLEFLAGHSWALFDWPSLWVRYTWLALVPALISAGLQALLRRWLPRHPFVFILGHGYFTAGLAALGASAAQAA 169
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: A0A7X3HIY8_9BURK (Uncharacterized protein n=2 Tax=unclassified Cupriavidus TaxID=2640874 RepID=A0A7X3HIY8_9BURK) HSP 1 Score: 64.7 bits (156), Expect = 1.490e-9 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 67 HRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATI----LASVFHQSASVAIWNAL-----FLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFFITGLAAAAA 408
H + G + L LLW ARA G+G+ +QL+G L M G LAM + A+ + LA + + + W +L ++ +VP T + A+ +W+P HPFV+ILG+G+F +AA A
Sbjct: 44 HAWLGSLVFLTLLWSARATVGEGVVIQLMGASLAVTMFGLPLAMVTLAIVDVVSLLGLAYLSGRGWAQIDWVSLGPRFFWMALVPGALTAALQAALRRWVPRHPFVFILGHGYFSALVAAVVA 166
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Match: UPI00164B7A73 (energy-coupling factor ABC transporter permease n=1 Tax=Undibacterium jejuense TaxID=1344949 RepID=UPI00164B7A73) HSP 1 Score: 63.9 bits (154), Expect = 2.470e-9 Identity = 55/165 (33.33%), Postives = 74/165 (44.85%), Query Frame = 1
Query: 37 WKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLVGVPLLTLMLGPALAMWSAALAATILASVFHQSASVAIW-----NALFLGVVPALATDLGRRAVAQWLPAHPFVYILGNGFF-------ITGLAAAAAQLCAAALLLAHGPATDSALLAQYAPFMLL 495
WK G + + L L+W R L L L+GV +L LM G ALA + AALA + + +W N + L + P +DL R ++LP H FVY+ GNGFF TGL A A +LLL P ++ A YA +LL
Sbjct: 33 WKLWREPGVFSAWCASLIVLTLVWRMRVHVNADLHLHLLGVAILALMFGRALASFGAALAV-----IAYTGEYDGLWLNIGTNIIMLAIFPCFLSDLILRKTQRYLPQHMFVYLFGNGFFGAFFVNAATGLFAITAH----SLLLPSPPTSNDA----YAYMLLL 184 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig58354.1.1 >prot_P-wetherbeei_contig58354.1.1 ID=prot_P-wetherbeei_contig58354.1.1|Name=mRNA_P-wetherbeei_contig58354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp GSVLALAARAAAWKQAFSSGALHRFFGGALALALLWIARAEPGQGLALQLback to top mRNA from alignment at P-wetherbeei_contig58354:2..502- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig58354.1.1 ID=mRNA_P-wetherbeei_contig58354.1.1|Name=mRNA_P-wetherbeei_contig58354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58354:2..502- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig58354:2..502- >mRNA_P-wetherbeei_contig58354.1.1 ID=mRNA_P-wetherbeei_contig58354.1.1|Name=mRNA_P-wetherbeei_contig58354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58354:2..502- (Phaeothamnion wetherbeei SAG_119_79)back to top |