mRNA_P-wetherbeei_contig5835.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5835.3.1
Unique NamemRNA_P-wetherbeei_contig5835.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5835.3.1 vs. uniprot
Match: A0A7X8XKF2_9BURK (OmpH family outer membrane protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKF2_9BURK)

HSP 1 Score: 70.1 bits (170), Expect = 3.240e-12
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:    7 LVVGKVDSAIVLQSDPDYMPMAQQYLREQTELRSKTYKEAMKLKGKTD---ALQKLQAQFMEEQKALTSKWQKTTQDFLTTRNSKMRQMVEDICKDKHIDMVLIDSKEYATVEWGAVDITPDVLLKTSG 384
            L  G VD+ ++LQ+D +Y   AQ+Y  E+     K  +      G+       +KL+A   E    L  KWQ  T++F  +R  ++    + + + K + +VLID+K+YATVE+GAVD+T D+L +  G
Sbjct:   31 LKTGTVDTTVLLQADDEYQDFAQEYFAERLASAEKIREIVASQGGEVRDQATFEKLRAIESE----LLKKWQDRTKEFTRSRMDRISAAAQVVARKKGLHLVLIDAKDYATVEYGAVDVTGDILAEMPG 155
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BLAST of mRNA_P-wetherbeei_contig5835.3.1 vs. uniprot
Match: A0A355TUZ6_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TUZ6_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.150e-11
Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 1 
Query:    1 EKLVV--GKVDSAIVLQSDPDYMPMAQQYLREQTELRSKTYKEAMKLKGKTDAL---QKLQAQFMEEQKALTSKWQKTTQDFLTTRNSKMRQMVEDICKDKHIDMVLIDSKEYATVEWGAVDITPDVLLKTSG 384
            EK+V+  G ++S +VLQ D  Y  +++QY  E+ +  S+  +  +K     D +   + +  + M+ Q  + SKWQK T D++  +   M +    +  DK +D++LIDS +  TVE+G  D+T +VL +  G
Sbjct:   28 EKVVIRTGTINSTVVLQEDDKYQELSRQYFAERIKA-SQEVQRIVKENSNADGVVSDKSVYDKLMKIQNDVESKWQKRTADYIDAKMKSMEKAAAKVALDKGLDIILIDSNDVPTVEYGGHDVTANVLAEMPG 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5835.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X8XKF2_9BURK3.240e-1234.11OmpH family outer membrane protein n=1 Tax=Burkhol... [more]
A0A355TUZ6_9BACT2.150e-1131.58Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5835contigP-wetherbeei_contig5835:2383..2820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size438
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.3801217-CDS-P-wetherbeei_contig5835:2382..28201683186864.3801217-CDS-P-wetherbeei_contig5835:2382..2820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5835 2383..2820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5835.3.1prot_P-wetherbeei_contig5835.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5835 2383..2820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5835.3.1

>prot_P-wetherbeei_contig5835.3.1 ID=prot_P-wetherbeei_contig5835.3.1|Name=mRNA_P-wetherbeei_contig5835.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
EKLVVGKVDSAIVLQSDPDYMPMAQQYLREQTELRSKTYKEAMKLKGKTD
ALQKLQAQFMEEQKALTSKWQKTTQDFLTTRNSKMRQMVEDICKDKHIDM
VLIDSKEYATVEWGAVDITPDVLLKTSGGAAAPAAGSSTPKGDSK*
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mRNA from alignment at P-wetherbeei_contig5835:2383..2820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5835.3.1 ID=mRNA_P-wetherbeei_contig5835.3.1|Name=mRNA_P-wetherbeei_contig5835.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:2383..2820+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAACTGGTGGTCGGCAAAGTCGATTCGGCCATCGTTTTGCAATCCGA
TCCCGACTACATGCCGATGGCTCAGCAGTATCTGCGCGAGCAGACGGAGC
TTCGCTCCAAGACCTACAAAGAGGCTATGAAGCTCAAGGGTAAGACCGAC
GCGCTGCAAAAGCTCCAGGCCCAGTTTATGGAAGAACAGAAAGCTCTGAC
CAGCAAATGGCAGAAAACCACGCAGGACTTCCTGACGACGCGCAACTCCA
AGATGCGTCAGATGGTTGAAGACATCTGCAAAGACAAGCACATCGACATG
GTGCTCATTGACTCCAAAGAATATGCCACCGTCGAATGGGGCGCCGTCGA
TATCACTCCCGACGTCCTCCTCAAGACTTCGGGTGGCGCAGCGGCTCCGG
CCGCCGGCTCGAGCACCCCTAAAGGTGATTCCAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5835:2383..2820+

>mRNA_P-wetherbeei_contig5835.3.1 ID=mRNA_P-wetherbeei_contig5835.3.1|Name=mRNA_P-wetherbeei_contig5835.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:2383..2820+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAACTGGTGGTCGGCAAAGTCGATTCGGCCATCGTTTTGCAATCCGA
TCCCGACTACATGCCGATGGCTCAGCAGTATCTGCGCGAGCAGACGGAGC
TTCGCTCCAAGACCTACAAAGAGGCTATGAAGCTCAAGGGTAAGACCGAC
GCGCTGCAAAAGCTCCAGGCCCAGTTTATGGAAGAACAGAAAGCTCTGAC
CAGCAAATGGCAGAAAACCACGCAGGACTTCCTGACGACGCGCAACTCCA
AGATGCGTCAGATGGTTGAAGACATCTGCAAAGACAAGCACATCGACATG
GTGCTCATTGACTCCAAAGAATATGCCACCGTCGAATGGGGCGCCGTCGA
TATCACTCCCGACGTCCTCCTCAAGACTTCGGGTGGCGCAGCGGCTCCGG
CCGCCGGCTCGAGCACCCCTAAAGGTGATTCCAAATGA
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