mRNA_P-wetherbeei_contig5835.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5835.1.1
Unique NamemRNA_P-wetherbeei_contig5835.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A7X9AE57_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AE57_9BURK)

HSP 1 Score: 219 bits (558), Expect = 2.710e-67
Identity = 125/248 (50.40%), Postives = 171/248 (68.95%), Query Frame = 1
Query:    1 AKGVGSVEQDQIFELEEFKTAKKQVEDLVKAKQAELE--------KKGIKKDKPPTPPQQQMLRDAQAEIQKETAKILNPLKARAEAAVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTFQTKGELKLPPEADTSKAPIGYFDQSVVRSLKLFSEADANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            AK V +++++ IF L+ FK A+KQ+E+  K K+ E E        K+G + +         + R  Q E+Q++  +ILNPL+ +AEAAVA VA  K + V+LDKRIVVYGVPDIT+DVKK F  +GEL LP   DTS +P+ YFDQ VVRSLK+F EAD  +++ R +LM  Y+  A N S +ERE ++ +L  +LEAY EQ+M PL Q+V  SV +V++AQG+SLVLDKQ+VM GGRN+T+ VVE F
Sbjct:   47 AKKVAAIDREIIFTLDAFKNAEKQIEEFGKQKKTEFEAAVKAQQGKEGAEAEL------SNLRRKLQLEVQQKRNQILNPLQTKAEAAVATVARSKGLTVVLDKRIVVYGVPDITEDVKKMFLQEGELNLPAAQDTSNSPVAYFDQDVVRSLKVFQEADLRLFQHRNDLMRDYEGQAGNLSPAEREALQNKLTAQLEAYSEQLMAPLYQKVTSSVHEVSKAQGVSLVLDKQNVMYGGRNITDSVVETF 288          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A355TVQ9_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TVQ9_9BACT)

HSP 1 Score: 200 bits (509), Expect = 9.830e-60
Identity = 116/242 (47.93%), Postives = 160/242 (66.12%), Query Frame = 1
Query:    1 AKGVGSVEQDQIFELEEFKTAKKQVEDLVKAKQAELEKKGIKKD-KPPTPPQQQMLRDA-QAEIQKETAKILNPLKARAEAAVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTFQTKGELKLPPEADTSKAPIGYFDQSVVRSLKLFSEADANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            AK VG ++   I+ L+EFK A+KQ+ D  + K  E EK   +K+ K     + Q+L    Q E++    KI+ PL  R  AA+A+V+  K + V+LDKR+VV GVPDIT+DVKK FQ KGELK+P E DTS +P+ YFD  +VR LK+F E D  + + RA++M  Y+  A N SASERE ++RE+  + EA  +Q   PL Q+VN+SV  VA+  G+SLVL KQ VM GGRN+T+EV++ F
Sbjct:   64 AKKVGCIDASAIYALDEFKNAEKQIADFAEKKNKEFEKAVSEKNGKEGAETELQLLYSKLQGEVEVNRNKIILPLNNRVSAAIASVSASKGLNVVLDKRVVVCGVPDITEDVKKLFQQKGELKVPAEEDTSDSPVAYFDSGIVRKLKVFGEVDIKLSQARADMMREYEKKAPNLSASEREALQREMSARFEALSQQQYAPLYQKVNNSVNKVAKDLGISLVLSKQTVMYGGRNITDEVIDTF 305          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A2W5X9N1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Eremiobacteraeota bacterium TaxID=2052317 RepID=A0A2W5X9N1_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 2.620e-17
Identity = 57/191 (29.84%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  151 QQQMLRDAQAEIQKETAKILNPLKARAEAAVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTFQTKGELKLPPEADTSKAPIGYFDQSVVRSL-KLFSEADANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            QQ+++ + +  +Q     +L PL  RA+ A+A+V+  KN+ VI+DK IV++G  DIT  V    Q+ G +  P       + IG+ D   + ++ KL +  D  +     +   + Q ++K K+ +ER+ + R+ +  +   Q+Q ++PL  Q   ++ D+ + + L LV+DK H++ GG ++T +V  AF
Sbjct:   90 QQRIITEFRGRLQDRQRALLGPLFGRAQTAIASVSSSKNLSVIVDKSIVIFGGQDITKAVIDLMQSPGPIAAPVSTPPP-SEIGFVDNDQIDAIPKLKTANDDFLRFNEQQKRIAAQKMSKAKTDAERQQVLRDYQKTVSDRQDQQLKPLADQTKSAIADIGKKKNLVLVIDKGHLIYGGTDITPDVQNAF 279          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A522PLH9_9BACT (OmpH family outer membrane protein n=2 Tax=bacterium TaxID=1869227 RepID=A0A522PLH9_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 4.120e-17
Identity = 73/246 (29.67%), Postives = 129/246 (52.44%), Query Frame = 1
Query:   10 VGSVEQDQIFELEEFKTAKKQVED----LVKAKQAELEKKGIKKDKPPTPPQQQMLRDAQAEIQKETAKILNPLKARAEAAVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTFQTKGE----LKLPPEADTSKAPIGYFDQSVVRSLKLFSEADANIYKKRAELMASYQA-VAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            +G V++  I  L  F++A+KQ  D    L ++ +A+++      D      QQ++ +D Q  I +    +  PL ARA+ A+A+VA ++++ V++DKRIV++G  DIT DV       G     +  PP +D     +GY DQ  +        A       R +     QA +++ K+ S+R  + +    +L+  Q+QV+ P+IQ+  + +  VA+ +GL LV+D+   + GG ++T +VV A 
Sbjct:   32 IGYVDEAAIGRLPAFESAQKQFNDERQSLEQSFEAQMKAAKSSAD------QQRVQQDFQQRIARRQQALFGPLFARAQMAIASVAANRSLTVVVDKRIVLFGGLDITKDVVDLVSGPGAPVTPVNTPPPSD-----VGYIDQGALDQTPRIKAAQDRFIAYRQDEEKRLQAQLSQAKNDSQRRALLKRSYAELDQQQQQVLGPVIQETQNVISAVAKKRGLLLVVDQASRVYGGTDVTADVVSAL 266          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A522N8F8_9BACT (OmpH family outer membrane protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A522N8F8_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.540e-14
Identity = 56/173 (32.37%), Postives = 91/173 (52.60%), Query Frame = 1
Query:  205 ILNPLKARAEAAVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTFQTKGELKLPPEADTSKAPIGYFDQSVVRSLKLFSEADANIYKKRAELMASYQA-VAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            +  PL ARA+ A+A VA ++++ V++DKRIV++G  DIT DV       G   + P      + +GY DQ  +        A       R +     QA +A+ KS   R  +  +    L+  Q+Q++ P+IQ+  + +  VA+ +GL LVLD+   + GG ++TN+VV A 
Sbjct:   88 LFGPLFARAQTAIAAVAANRSLTVVVDKRIVLFGGLDITKDVVDLVTGPG-APVTPVNSPPPSSVGYIDQEALDQTPRIKAAQDRFVAYRQDEEKRLQAQLAQAKSDGRRHELLAQSYTDLDQRQQQILGPVIQETQNVISAVAKKRGLLLVLDQASRVYGGTDVTNDVVSAL 259          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A645FFY9_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645FFY9_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 5.460e-13
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1
Query:  538 MERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF 720
            M+ +L  +LEAY+EQ+M PL Q+V  SV +V++AQG+SLVLDKQ+VM GGRN+T+ VVE F
Sbjct:    1 MQNKLTAQLEAYREQIMAPLYQKVTASVNEVSKAQGVSLVLDKQNVMYGGRNITDSVVETF 61          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A1V5P543_9BACT (Outer membrane protein (OmpH-like) n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5P543_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.150e-12
Identity = 48/168 (28.57%), Postives = 93/168 (55.36%), Query Frame = 1
Query:  238 AVANVAHDKNMLVILDKRIVVYGVPDITDDVKKTF-----QTKGELKLPPEADTSKAPIGYFDQSVVRSLKLFSEADANIYKKRAELMASYQAVAK----NKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVE 714
            A+  VA ++ + VILDK IVV GV DITD VKK F     + K     P E   ++  +GY +Q  + ++    +A    +K+  E+    +   K    + S    +++  + + KL++ + ++ +P+  ++N +  D+A+ + L +VLD+ +++ GG ++T+EVV+
Sbjct:  110 AIEKVAKEEGLSVILDKTIVVCGVTDITDKVKKVFLGSDKEDKSPTPSPAEKTPARQLVGYLNQEKLYNIPKMKKAQEAYFKEFNEMQVKLEKTVKELYGDNSMPPAKILS-DYQKKLDSKKAEIFKPVDDEINKAASDIAKEKNLIVVLDEINILYGGIDLTDEVVD 276          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: A0A6I2UH05_9FIRM (OmpH family outer membrane protein n=1 Tax=Anaerovibrio slackiae TaxID=2652309 RepID=A0A6I2UH05_9FIRM)

HSP 1 Score: 57.8 bits (138), Expect = 6.280e-7
Identity = 32/106 (30.19%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  397 IGYFDQSVVRSLKLFSEADANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVE 714
            +G  D     SLK++++ DA + K   +    +   + N S  E++   ++   +L+     +M+P+ +Q+ D+VK VA+A+GLS+VL K+ V+ GG ++T +V++
Sbjct:   45 VGVVDYRQFTSLKIYTDVDAEMQKAFEQARQDFNEKSANMSDEEKQQYYQQTMERLQQQNVDLMEPVNKQIEDAVKAVAEAKGLSVVLHKETVVYGGTDITQDVIK 150          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: UPI001F2B1806 (OmpH family outer membrane protein n=1 Tax=Anaerovibrio lipolyticus TaxID=82374 RepID=UPI001F2B1806)

HSP 1 Score: 54.7 bits (130), Expect = 8.120e-6
Identity = 29/96 (30.21%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  427 SLKLFSEADANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVE 714
            +LK++++A+A + K   +    +   + N S  E++   ++   +L+     +M+P+ +QV D+VK +A+A+GLS+VL+K  V+ GG ++T +V++
Sbjct:   55 TLKIYTDAEAEMQKAVQQAQQEFNEKSANMSDEEKQAYYQQTMERLQQQNTDLMEPVQKQVEDAVKAIAEAKGLSVVLNKDTVVYGGTDITQDVIK 150          
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Match: UPI000DA610B1 (OmpH family outer membrane protein n=1 Tax=Massilibacillus massiliensis TaxID=1806837 RepID=UPI000DA610B1)

HSP 1 Score: 52.8 bits (125), Expect = 4.110e-5
Identity = 32/111 (28.83%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  385 SKAPIGYFDQSVVRSLKLFSEADANIYKKRAE-LMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLIQQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVE 714
            S + +G  +Q ++ S      A     +K  E   A +++ + N +  E++   ++++ +L A +++++ P+  +V  ++K VA A+GLS+VLDK +V+ GG+++T+EVV+
Sbjct:   42 SSSNVGVVNQQLIVSQHPDMTAAKEAMQKEVEQAKADFESKSANMNDQEKQAYYQQIQQRLAAKEKELITPIFDKVEATIKSVADAKGLSVVLDKSNVVYGGQDITDEVVK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5835.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7X9AE57_9BURK2.710e-6750.40Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A355TVQ9_9BACT9.830e-6047.93Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A2W5X9N1_9BACT2.620e-1729.84Uncharacterized protein n=1 Tax=Candidatus Eremiob... [more]
A0A522PLH9_9BACT4.120e-1729.67OmpH family outer membrane protein n=2 Tax=bacteri... [more]
A0A522N8F8_9BACT2.540e-1432.37OmpH family outer membrane protein n=1 Tax=bacteri... [more]
A0A645FFY9_9ZZZZ5.460e-1360.66Uncharacterized protein n=1 Tax=bioreactor metagen... [more]
A0A1V5P543_9BACT2.150e-1228.57Outer membrane protein (OmpH-like) n=1 Tax=bacteri... [more]
A0A6I2UH05_9FIRM6.280e-730.19OmpH family outer membrane protein n=1 Tax=Anaerov... [more]
UPI001F2B18068.120e-630.21OmpH family outer membrane protein n=1 Tax=Anaerov... [more]
UPI000DA610B14.110e-528.83OmpH family outer membrane protein n=1 Tax=Massili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5835contigP-wetherbeei_contig5835:7..726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2754.EH55_09730
PFAMsOmpH
Model size720
Max annot lvl2|Bacteria
KEGG koko:K06142
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.01e-06
EggNOG OGsCOG2825@1|root,COG2825@2|Bacteria
Descriptionunfolded protein binding
Cds size720
COG categoryM
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.3290951-CDS-P-wetherbeei_contig5835:6..7261683186864.3290951-CDS-P-wetherbeei_contig5835:6..726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5835 7..726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5835.1.1prot_P-wetherbeei_contig5835.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5835 7..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5835.1.1

>prot_P-wetherbeei_contig5835.1.1 ID=prot_P-wetherbeei_contig5835.1.1|Name=mRNA_P-wetherbeei_contig5835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
AKGVGSVEQDQIFELEEFKTAKKQVEDLVKAKQAELEKKGIKKDKPPTPP
QQQMLRDAQAEIQKETAKILNPLKARAEAAVANVAHDKNMLVILDKRIVV
YGVPDITDDVKKTFQTKGELKLPPEADTSKAPIGYFDQSVVRSLKLFSEA
DANIYKKRAELMASYQAVAKNKSASERELMERELRLKLEAYQEQVMQPLI
QQVNDSVKDVAQAQGLSLVLDKQHVMQGGRNMTNEVVEAF
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mRNA from alignment at P-wetherbeei_contig5835:7..726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5835.1.1 ID=mRNA_P-wetherbeei_contig5835.1.1|Name=mRNA_P-wetherbeei_contig5835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:7..726+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGGCGTGGGCTCCGTCGAGCAAGACCAGATTTTCGAGCTCGAGGA GTTCAAGACCGCCAAAAAGCAAGTCGAGGACCTCGTGAAAGCCAAGCAGG CCGAACTCGAGAAGAAGGGCATCAAGAAAGATAAGCCCCCCACGCCCCCG CAGCAGCAGATGCTCCGCGATGCCCAGGCCGAGATTCAAAAAGAGACGGC TAAGATCCTCAACCCGCTCAAAGCGCGCGCCGAGGCAGCCGTAGCCAATG TGGCCCACGACAAAAATATGCTCGTCATCCTGGACAAGCGTATCGTCGTC TACGGCGTGCCCGATATCACCGATGATGTGAAGAAGACTTTCCAGACCAA GGGCGAGCTTAAGCTCCCCCCCGAGGCCGATACCAGCAAGGCGCCCATCG GCTATTTCGATCAGTCCGTCGTGCGCTCGCTCAAGCTCTTCTCCGAAGCT GACGCCAACATTTACAAGAAGCGCGCCGAGCTGATGGCCTCTTATCAGGC CGTGGCCAAGAACAAGAGCGCCAGTGAGCGCGAGTTGATGGAGCGCGAAC TGCGCCTCAAACTCGAAGCTTACCAGGAGCAAGTGATGCAGCCTCTCATC CAGCAGGTCAACGACTCCGTCAAGGACGTCGCCCAGGCTCAGGGTCTCTC GCTCGTTCTCGATAAGCAGCACGTCATGCAGGGTGGACGTAACATGACCA ACGAGGTCGTCGAGGCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5835:7..726+

>mRNA_P-wetherbeei_contig5835.1.1 ID=mRNA_P-wetherbeei_contig5835.1.1|Name=mRNA_P-wetherbeei_contig5835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig5835:7..726+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGGCGTGGGCTCCGTCGAGCAAGACCAGATTTTCGAGCTCGAGGA
GTTCAAGACCGCCAAAAAGCAAGTCGAGGACCTCGTGAAAGCCAAGCAGG
CCGAACTCGAGAAGAAGGGCATCAAGAAAGATAAGCCCCCCACGCCCCCG
CAGCAGCAGATGCTCCGCGATGCCCAGGCCGAGATTCAAAAAGAGACGGC
TAAGATCCTCAACCCGCTCAAAGCGCGCGCCGAGGCAGCCGTAGCCAATG
TGGCCCACGACAAAAATATGCTCGTCATCCTGGACAAGCGTATCGTCGTC
TACGGCGTGCCCGATATCACCGATGATGTGAAGAAGACTTTCCAGACCAA
GGGCGAGCTTAAGCTCCCCCCCGAGGCCGATACCAGCAAGGCGCCCATCG
GCTATTTCGATCAGTCCGTCGTGCGCTCGCTCAAGCTCTTCTCCGAAGCT
GACGCCAACATTTACAAGAAGCGCGCCGAGCTGATGGCCTCTTATCAGGC
CGTGGCCAAGAACAAGAGCGCCAGTGAGCGCGAGTTGATGGAGCGCGAAC
TGCGCCTCAAACTCGAAGCTTACCAGGAGCAAGTGATGCAGCCTCTCATC
CAGCAGGTCAACGACTCCGTCAAGGACGTCGCCCAGGCTCAGGGTCTCTC
GCTCGTTCTCGATAAGCAGCACGTCATGCAGGGTGGACGTAACATGACCA
ACGAGGTCGTCGAGGCCTTC
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