mRNA_P-wetherbeei_contig58339.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig58339.1.1
Unique Name	mRNA_P-wetherbeei_contig58339.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: G4Z7S3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z7S3_PHYSP)

HSP 1 Score: 127 bits (319), Expect = 1.180e-34
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 1

Query:    7 DRKLFPGHDQYQRFGAFLGRKASGTDNLFEFF--DVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLKKLD 354
            D +LFPG DQY RF   L R         E     V + D+GTH  RKGAATY ASGSTACP   A+ LRAGW++G VQ+ Y+RYEAAGD Y+GRTV+GLP  SH+F +LPPH  + D
Sbjct:   43 DNRLFPGSDQYDRFRKCLQRLLVDEKVAAELKRRGVNSNDLGTHLMRKGAATYCASGSTACPSSTAVHLRAGWSLGGVQNTYLRYEAAGDMYVGRTVAGLPSGSHEFTILPPHFVEQD 160

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: V9E0Y5_PHYPR (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=V9E0Y5_PHYPR)

HSP 1 Score: 128 bits (322), Expect = 4.930e-33
Identity = 65/113 (57.52%), Postives = 79/113 (69.91%), Query Frame = 1

Query:   13 KLFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            ++FPG+DQY RF   L R  +  G  N  E   V   DIGTHS RKGAATY +SGSTACPP  A+ LRAGW +G VQDRY+R+++AGD ++GRTVSGLP+   DF  LPP  K
Sbjct:   25 QVFPGNDQYDRFRKTLRRALETPGLANELERVGVRCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTVSGLPILKADFATLPPRFK 137

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: W2PW09_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2PW09_PHYPN)

HSP 1 Score: 126 bits (316), Expect = 5.370e-33
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 1

Query:   13 KLFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            ++FPG+DQY RF   L R  ++ G  N  +   V   DIGTHS RKG+ATY +SGSTACPP  A+ LRAGW +G VQDRY+R+++AGD  +GRTVSGLP+   +F +LPP  K
Sbjct:   98 QVFPGNDQYDRFRKTLRRVSESPGVKNELDRVGVRCDDIGTHSMRKGSATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMLVGRTVSGLPIHKSEFAILPPRFK 210

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: A0A225WLB8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLB8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.600e-32
Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 1

Query:   16 LFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLKKLD 354
            LFPG +QY+RF   L R  +  G+ +      V   D+GTHS RKGAATY  SGST+CP   A+ LRAGW++G VQ+ Y+RYEAAGD ++GRTVSGLP  S +F VLPPH+ K D
Sbjct:  117 LFPGSNQYERFRKCLHRLLERDGSKDELRRRGVNQDDLGTHSTRKGAATYCTSGSTSCPSSTAVHLRAGWSLGGVQNTYLRYEAAGDMHVGRTVSGLPPGSQNFAVLPPHIVKRD 231

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: A0A0W8CC39_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CC39_PHYNI)

HSP 1 Score: 125 bits (315), Expect = 2.090e-32
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 1

Query:   13 KLFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            ++FPG+DQY RF   L R  ++ G  N  +   V   DIGTHS RKG+ATY +SGSTACPP  A+ LRAGW +G VQDRY+R+++AGD  +GRTVSGLP+   +F +LPP  K
Sbjct:   46 QVFPGNDQYDRFRKTLRRVSESPGVKNELDRVGVRCDDIGTHSMRKGSATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMLVGRTVSGLPIHKSEFAILPPXFK 158

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: W2QUJ4_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QUJ4_PHYPN)

HSP 1 Score: 128 bits (322), Expect = 3.050e-32
Identity = 65/113 (57.52%), Postives = 79/113 (69.91%), Query Frame = 1

Query:   13 KLFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            ++FPG+DQY RF   L R  +  G  N  E   V   DIGTHS RKGAATY +SGSTACPP  A+ LRAGW +G VQDRY+R+++AGD ++GRTVSGLP+   DF  LPP  K
Sbjct:  239 QVFPGNDQYDRFRKTLRRALETPGLANELERVGVRCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTVSGLPILKADFATLPPRFK 351

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: A0A225V226_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V226_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.890e-32
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1

Query:   16 LFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPH 339
            LFPG+DQY+RF   LGR  ++S      E     A DIGTHS RKGA+TY +SGSTACP   A+ LRAGW++G VQDRY+R++AAGD ++GRTVSGLP+   +F  LPPH
Sbjct:  236 LFPGNDQYERFRKVLGRVLESSSISKELERRGNLATDIGTHSMRKGASTYCSSGSTACPSAVAVHLRAGWSMGGVQDRYLRHDAAGDMFVGRTVSGLPILKPEFASLPPH 345

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: W2Y819_PHYPR (Uncharacterized protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Y819_PHYPR)

HSP 1 Score: 128 bits (321), Expect = 4.100e-32
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 1

Query:   13 KLFPGHDQYQRFGAFLGR--KASGTDNLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            ++FPG+DQY RF   L R  +  G  N  E   V   DIGTHS RKGAATY +SGSTACPP  A+ LRAGW +G VQDRY+R+++AGD ++GRT+SGLP+   DF  LPP  K
Sbjct:  145 QVFPGNDQYDRFRKTLRRALETPGLANELERVGVRCDDIGTHSMRKGAATYCSSGSTACPPAIAVHLRAGWALGGVQDRYLRHDSAGDMFVGRTISGLPILKADFATLPPRFK 257

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: A0A225UJG8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJG8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.980e-32
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1

Query:    7 DRKLFPGHDQYQRFGAFLGRKASGTDNLFEFF--DVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLKKLD 354
            D  LFPG+D+Y+ F   LGR   G D   E      AA+DIGTHS RKGA+TY +SGSTACPP  A+ LRAG ++G VQDRY+R++AAGD ++GRTVSGLP+   +F  LPP     D
Sbjct:  165 DVHLFPGNDEYEPFRKVLGRTLKGADVAAELERRGTAAEDIGTHSMRKGASTYCSSGSTACPPSVAVHLRAGRSMGGVQDRYLRHDAAGDMFVGRTVSGLPILQPEFASLPPRFSSAD 282

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BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Match: A0A2D4CK12_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CK12_PYTIN)

HSP 1 Score: 121 bits (304), Expect = 7.390e-32
Identity = 63/115 (54.78%), Postives = 79/115 (68.70%), Query Frame = 1

Query:    7 DRKLFPGHDQYQRFGAFLGRKASGTD--NLFEFFDVAAKDIGTHSARKGAATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGLPLSSHDFCVLPPHLK 345
            D  LFPG +QY+RF   L R  SGT+  +  E   +   +IGTHS RKG+ATY +SGSTACP   AI LRAGW++G V +RY+R++ AGD ++GRTV GLP    DF VLPPH K
Sbjct:   25 DGYLFPGSNQYERFRKLLSRVLSGTELKDELERRGIDPANIGTHSMRKGSATYCSSGSTACPSAIAIHLRAGWSMGGVTNRYLRHDGAGDMHVGRTVCGLPSDEPDFAVLPPHFK 139

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig58339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
G4Z7S3_PHYSP	1.180e-34	55.93	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
V9E0Y5_PHYPR	4.930e-33	57.52	Uncharacterized protein (Fragment) n=2 Tax=Phytoph...	[more]
W2PW09_PHYPN	5.370e-33	54.87	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
A0A225WLB8_9STRA	1.600e-32	55.65	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
A0A0W8CC39_PHYNI	2.090e-32	54.87	Uncharacterized protein n=1 Tax=Phytophthora nicot...	[more]
W2QUJ4_PHYPN	3.050e-32	57.52	Uncharacterized protein n=3 Tax=Phytophthora paras...	[more]
A0A225V226_9STRA	3.890e-32	58.18	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
W2Y819_PHYPR	4.100e-32	56.64	Uncharacterized protein n=4 Tax=Phytophthora paras...	[more]
A0A225UJG8_9STRA	6.980e-32	55.08	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
A0A2D4CK12_PYTIN	7.390e-32	54.78	Uncharacterized protein (Fragment) n=1 Tax=Pythium...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig58339	contig	P-wetherbeei_contig58339:2..383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	4792.ETI48849
Model size	382
Max annot lvl	4776\|Peronosporales
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.52e-29
EggNOG OGs	29FCZ@1\|root,2RNII@2759\|Eukaryota,3QI7M@4776\|Peronosporales
Cds size	381

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186864.3017774-CDS-P-wetherbeei_contig58339:1..382	1683186864.3017774-CDS-P-wetherbeei_contig58339:1..382	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig58339 2..382 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig58339.1.1	prot_P-wetherbeei_contig58339.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig58339 2..382 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig58339:2..383+
coding sequence from alignment at P-wetherbeei_contig58339:2..383+

protein sequence of mRNA_P-wetherbeei_contig58339.1.1

>prot_P-wetherbeei_contig58339.1.1 ID=prot_P-wetherbeei_contig58339.1.1|Name=mRNA_P-wetherbeei_contig58339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
CQDRKLFPGHDQYQRFGAFLGRKASGTDNLFEFFDVAAKDIGTHSARKGA
ATYAASGSTACPPIPAICLRAGWTVGPVQDRYIRYEAAGDQYMGRTVSGL
PLSSHDFCVLPPHLKKLDGHGVPIPGV

mRNA from alignment at P-wetherbeei_contig58339:2..383+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig58339.1.1 ID=mRNA_P-wetherbeei_contig58339.1.1|Name=mRNA_P-wetherbeei_contig58339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=382bp|location=Sequence derived from alignment at P-wetherbeei_contig58339:2..383+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCAGGATCGGAAGCTGTTTCCGGGGCATGACCAGTACCAGCGGTTTGG
CGCTTTTCTGGGCCGCAAGGCAAGCGGCACCGACAACTTGTTTGAGTTTT
TTGACGTCGCGGCGAAGGACATCGGAACTCATTCTGCTCGGAAAGGAGCC
GCGACGTACGCCGCGTCGGGCTCGACAGCCTGCCCGCCGATTCCCGCCAT
CTGCCTGAGAGCTGGCTGGACCGTCGGCCCCGTCCAGGACCGTTACATAC
GTTACGAAGCGGCCGGCGACCAGTACATGGGACGGACCGTGAGCGGCCTG
CCGCTGTCGTCGCACGACTTCTGCGTGCTGCCGCCTCATTTAAAAAAATT
GGACGGCCACGGCGTTCCCATACCGGGCGTGG

Coding sequence (CDS) from alignment at P-wetherbeei_contig58339:2..383+

>mRNA_P-wetherbeei_contig58339.1.1 ID=mRNA_P-wetherbeei_contig58339.1.1|Name=mRNA_P-wetherbeei_contig58339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig58339:2..383+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCAGGATCGGAAGCTGTTTCCGGGGCATGACCAGTACCAGCGGTTTGG
CGCTTTTCTGGGCCGCAAGGCAAGCGGCACCGACAACTTGTTTGAGTTTT
TTGACGTCGCGGCGAAGGACATCGGAACTCATTCTGCTCGGAAAGGAGCC
GCGACGTACGCCGCGTCGGGCTCGACAGCCTGCCCGCCGATTCCCGCCAT
CTGCCTGAGAGCTGGCTGGACCGTCGGCCCCGTCCAGGACCGTTACATAC
GTTACGAAGCGGCCGGCGACCAGTACATGGGACGGACCGTGAGCGGCCTG
CCGCTGTCGTCGCACGACTTCTGCGTGCTGCCGCCTCATTTAAAAAAATT
GGACGGCCACGGCGTTCCCATACCGGGCGTG