mRNA_P-wetherbeei_contig5832.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5832.3.1
Unique NamemRNA_P-wetherbeei_contig5832.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5832.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5832contigP-wetherbeei_contig5832:2218..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1302
Hectar predicted targeting categoryother localisation
Exons1
Cds size891
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.08673-UTR-P-wetherbeei_contig5832:2217..25441683186864.08673-UTR-P-wetherbeei_contig5832:2217..2544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5832 2218..2544 +
1683186864.1075697-UTR-P-wetherbeei_contig5832:3435..35191683186864.1075697-UTR-P-wetherbeei_contig5832:3435..3519Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5832 3436..3519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.0972836-CDS-P-wetherbeei_contig5832:2544..34351683186864.0972836-CDS-P-wetherbeei_contig5832:2544..3435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5832 2545..3435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5832.3.1prot_P-wetherbeei_contig5832.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5832 2545..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5832.3.1

>prot_P-wetherbeei_contig5832.3.1 ID=prot_P-wetherbeei_contig5832.3.1|Name=mRNA_P-wetherbeei_contig5832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=297bp
MNSGETEACGVPTRALQKVNPCEKHAGEPTTAPAYTLRSGTSGGGSSSIN
VRWIRWQDASSGAAFAAAAAAVAAVAAGMATPSAADATEIAMAAAATRRA
HKKDTRPQTYPLANGATAAELAPGIHCATTQSDLKRGQTRSTGGRLPVGR
ATTAPRGAPIAKESHGARFPSPATADKGRQAAAAPLPQPLTLGHSQPGPG
VPAAWTLTTPIPTITKNRSVHAVSQPLLHHSAGYFDPWRVAQQPRCYVGS
GGSAGVTCGGAGEISERALDGQSRQVILDAIAKGMREMEARVQSGW*
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mRNA from alignment at P-wetherbeei_contig5832:2218..3519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5832.3.1 ID=mRNA_P-wetherbeei_contig5832.3.1|Name=mRNA_P-wetherbeei_contig5832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig5832:2218..3519+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGACATCGCCGAGCCAGCGCAGTTTTCTGGGGTGTGCGCGCCGTC
AGCCGGTGGCGGCGACGGCGGGGGCGCCGGTGGCAGTGGCGGCGGCGACG
ACGGAGGCGGCAGCAGCGGGGCGGGAACGGATGATGGTGATGGCAGACGA
GGAGCGAGGTCTGGTTTTAAAGCTGGACCAGAAACAATATTGGGAATAGC
GGCGGCGGCGTCGCGGGCGGGAAAGAGTGCTCTCGGAATCGGGAACACGG
CGGAAGTTGCGCTGACGGGGTGCGCTTGGCCGCCACGTCTTATTGCACAA
GACAGCTGGGAGAGTGAAACCGTTCTAATGAACAGCGGAGAAACTGAGGC
CTGCGGCGTGCCTACTCGAGCTCTGCAGAAGGTTAATCCGTGCGAGAAGC
ACGCCGGTGAGCCGACTACGGCGCCGGCATACACCTTGAGAAGCGGCACC
AGCGGCGGCGGCAGTAGCAGCATCAACGTCAGATGGATCAGATGGCAAGA
CGCTTCAAGCGGCGCTGCTTTTGCGGCAGCTGCAGCAGCCGTCGCCGCCG
TCGCTGCTGGAATGGCAACGCCGTCGGCGGCAGATGCAACCGAGATAGCC
ATGGCGGCAGCAGCAACGAGGCGAGCGCATAAAAAGGATACTCGCCCGCA
GACTTATCCGCTCGCCAACGGCGCGACGGCAGCAGAACTGGCACCGGGAA
TCCATTGTGCCACAACTCAGTCCGACCTCAAGCGGGGTCAGACAAGAAGC
ACCGGTGGTAGGCTACCTGTTGGCAGGGCGACTACTGCCCCGAGGGGCGC
ACCCATCGCTAAGGAGAGCCACGGGGCGAGGTTTCCATCCCCTGCAACGG
CAGACAAGGGCCGCCAGGCGGCAGCGGCACCGCTGCCACAGCCACTGACC
TTGGGGCATTCACAGCCGGGCCCGGGGGTCCCCGCTGCCTGGACACTGAC
GACGCCGATCCCAACCATCACGAAAAACAGGAGCGTGCACGCCGTCTCCC
AGCCGCTGCTCCATCACAGCGCCGGTTATTTCGACCCGTGGAGGGTGGCA
CAGCAACCGCGATGCTACGTCGGCAGTGGCGGCAGCGCCGGGGTCACTTG
CGGTGGCGCTGGCGAGATTTCCGAGCGCGCGTTGGATGGGCAGTCGCGGC
AAGTGATATTGGATGCAATAGCGAAGGGAATGCGCGAGATGGAGGCAAGA
GTGCAAAGTGGATGGTAGCGTGATTTTTTCTTTTGCGAAGGGAAGATCGG
TAGGAGGGGGCTGGATATGGTACGATTACAACCACTAAACGCAACATCAC
AC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5832:2218..3519+

>mRNA_P-wetherbeei_contig5832.3.1 ID=mRNA_P-wetherbeei_contig5832.3.1|Name=mRNA_P-wetherbeei_contig5832.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=891bp|location=Sequence derived from alignment at P-wetherbeei_contig5832:2218..3519+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACAGCGGAGAAACTGAGGCCTGCGGCGTGCCTACTCGAGCTCTGCA
GAAGGTTAATCCGTGCGAGAAGCACGCCGGTGAGCCGACTACGGCGCCGG
CATACACCTTGAGAAGCGGCACCAGCGGCGGCGGCAGTAGCAGCATCAAC
GTCAGATGGATCAGATGGCAAGACGCTTCAAGCGGCGCTGCTTTTGCGGC
AGCTGCAGCAGCCGTCGCCGCCGTCGCTGCTGGAATGGCAACGCCGTCGG
CGGCAGATGCAACCGAGATAGCCATGGCGGCAGCAGCAACGAGGCGAGCG
CATAAAAAGGATACTCGCCCGCAGACTTATCCGCTCGCCAACGGCGCGAC
GGCAGCAGAACTGGCACCGGGAATCCATTGTGCCACAACTCAGTCCGACC
TCAAGCGGGGTCAGACAAGAAGCACCGGTGGTAGGCTACCTGTTGGCAGG
GCGACTACTGCCCCGAGGGGCGCACCCATCGCTAAGGAGAGCCACGGGGC
GAGGTTTCCATCCCCTGCAACGGCAGACAAGGGCCGCCAGGCGGCAGCGG
CACCGCTGCCACAGCCACTGACCTTGGGGCATTCACAGCCGGGCCCGGGG
GTCCCCGCTGCCTGGACACTGACGACGCCGATCCCAACCATCACGAAAAA
CAGGAGCGTGCACGCCGTCTCCCAGCCGCTGCTCCATCACAGCGCCGGTT
ATTTCGACCCGTGGAGGGTGGCACAGCAACCGCGATGCTACGTCGGCAGT
GGCGGCAGCGCCGGGGTCACTTGCGGTGGCGCTGGCGAGATTTCCGAGCG
CGCGTTGGATGGGCAGTCGCGGCAAGTGATATTGGATGCAATAGCGAAGG
GAATGCGCGAGATGGAGGCAAGAGTGCAAAGTGGATGGTAG
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