mRNA_P-wetherbeei_contig58310.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58310.1.1
Unique NamemRNA_P-wetherbeei_contig58310.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A1F4F022_9PROT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1F4F022_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.080e-45
Identity = 75/106 (70.75%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNSVVEIVDRIRRAYEL 318
            E DGLP +GEDRLIPLKASAW+DL+ R A+GE +D+K IRKHAND++RLSQLLAP+ RIPLAA+I  DLNRFLDG+  D SIDPK++K+NN+V EIV RI  AYEL
Sbjct:  147 ESDGLPWVGEDRLIPLKASAWVDLNARQAKGEAVDAKNIRKHANDVMRLSQLLAPEARIPLAARIGDDLNRFLDGLAADRSIDPKSLKLNNTVAEIVQRIALAYEL 252
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A1D8J9B5_9BURK (Uncharacterized protein n=5 Tax=Comamonadaceae TaxID=80864 RepID=A0A1D8J9B5_9BURK)

HSP 1 Score: 134 bits (337), Expect = 8.080e-37
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNS-VVEIVDRIRRAYEL 318
            E+DGLP +GEDRLIPLKA AWLDLS R  +GEQ+D+K+IRKHAND+LRLSQLLAP  RIPL AKIA D+ RFL+    D S+DP+A+    + + + +DRI +AYEL
Sbjct:  147 EIDGLPWVGEDRLIPLKAIAWLDLSARREQGEQVDAKSIRKHANDVLRLSQLLAPATRIPLDAKIADDMRRFLNAAVADDSLDPRALGFGRAPLADFLDRIAQAYEL 253
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A1F4MDM1_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium RIFOXYD12_FULL_59_19 TaxID=1797574 RepID=A0A1F4MDM1_9BURK)

HSP 1 Score: 134 bits (336), Expect = 1.110e-36
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINN-SVVEIVDRIRRAYEL 318
            EVDGLP +GEDRLIPLKA AWL+L+ R  +GE +DS+ IRKH ND+LRL+QLLAP  RIPLA KIA D++RFL+ +  D S+DPK++++ N +V EIVDRI +AY L
Sbjct:  147 EVDGLPWVGEDRLIPLKAVAWLELTMRKEQGEPVDSRDIRKHLNDVLRLTQLLAPATRIPLAEKIADDMSRFLNALASDTSVDPKSLQLGNVTVAEIVDRIAQAYGL 253
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A2S4KBN3_9BURK (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2S4KBN3_9BURK)

HSP 1 Score: 132 bits (332), Expect = 4.780e-36
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNSVV-EIVDRIRRAYELHQR 327
            EVDGLP +GEDRLIPLKA AWL+LS R  +G  +D + IRKH ND+LRLSQLLAP  RIPLA +I  DL RFLD +  D SIDPKA+++ +  V E+  RI RAYEL QR
Sbjct:  147 EVDGLPWVGEDRLIPLKAIAWLELSLRKEQGANVDGRDIRKHLNDVLRLSQLLAPATRIPLAPRIGDDLRRFLDRVVTDDSIDPKALQLGDVTVHELAARIARAYELDQR 256
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A158JI34_9BURK (Uncharacterized protein n=1 Tax=Caballeronia choica TaxID=326476 RepID=A0A158JI34_9BURK)

HSP 1 Score: 130 bits (326), Expect = 3.620e-35
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNS-VVEIVDRIRRAYELHQ 324
            E+DG+P +GEDRLIPLKA AWLDLS R  +GE +D+K+IRKHANDILRLSQLL P  RIPL AKIA D+ RFLD    D S+DPK + ++ + + E + RI +AY L +
Sbjct:  147 EIDGVPWVGEDRLIPLKAIAWLDLSTRREQGEPVDAKSIRKHANDILRLSQLLTPSTRIPLEAKIADDMQRFLDAAAADDSLDPKTLGLDRTPLAEFLGRIAQAYGLKE 255
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A523Q1G0_9BURK (Uncharacterized protein n=3 Tax=Ideonella TaxID=36862 RepID=A0A523Q1G0_9BURK)

HSP 1 Score: 129 bits (325), Expect = 4.990e-35
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINN-SVVEIVDRIRRAYELH 321
            EVDGLP +GEDRLIPLKA AWLDL+ R  +G ++D+K +RKH ND+LRLSQLLAP  RI +  KIA D+ RFL  I  D SIDP+A+++ N SV E+V RI +AY++H
Sbjct:  147 EVDGLPWVGEDRLIPLKAIAWLDLTARKEQGAKVDAKDVRKHLNDVLRLSQLLAPTTRIGVDKKIADDMARFLVAISADASIDPRALQLGNVSVAELVSRIAQAYDIH 254
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: Q12D94_POLSJ (Uncharacterized protein n=2 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) TaxID=296591 RepID=Q12D94_POLSJ)

HSP 1 Score: 127 bits (318), Expect = 8.780e-35
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINN-SVVEIVDRIRRAYEL 318
            EV+GLP +GEDRLIPLKA AWL+L+ R  +G ++D+K +RKH ND+LRLSQLLAP  RIP+  KI  D+ RFL  +  D SIDPKA+++ N +VVE+V RI +AYE+
Sbjct:   71 EVNGLPWVGEDRLIPLKAIAWLELTARKEQGAKVDAKDVRKHLNDVLRLSQLLAPATRIPVDKKIGADMTRFLVAVAADTSIDPKALQLGNVAVVELVARIAQAYEI 177
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A257CWL6_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium PBB3 TaxID=2015565 RepID=A0A257CWL6_9BURK)

HSP 1 Score: 127 bits (318), Expect = 2.450e-34
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINN-SVVEIVDRIRRAYEL 318
            EV+GLP +GEDRLIPLKA AWLDLS R  +G+ +D+KTIRKHAND+LRLSQLL+P  RI L AKIA D+ RFLD    D S+DPKA+ +   S+ EI+ R+ +AY L
Sbjct:  117 EVNGLPWVGEDRLIPLKAVAWLDLSARKEQGQTVDAKTIRKHANDVLRLSQLLSPAKRILLDAKIAGDMRRFLDAAAADTSLDPKALGLGRTSLAEILGRVAQAYGL 223
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A368L8F9_9BURK (Uncharacterized protein n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L8F9_9BURK)

HSP 1 Score: 127 bits (320), Expect = 2.940e-34
Identity = 62/106 (58.49%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNSVVEIVDRIRRAYEL 318
            EV+GLP +GEDRLIPLKA AWLDL+ R A+G  +D+K +RKH ND+LRLSQLLAP  RI L  K++ D+ RFL  +  D +IDPK + + NSV E+V RI +AYE+
Sbjct:  147 EVNGLPWVGEDRLIPLKAIAWLDLTARKAQGANVDAKDVRKHLNDVLRLSQLLAPATRIALDKKMSDDMTRFLLAVAADPAIDPKTLGLGNSVAELVSRIAQAYEI 252
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BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Match: A0A2N2R9G5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-6 TaxID=2013718 RepID=A0A2N2R9G5_9PROT)

HSP 1 Score: 127 bits (319), Expect = 3.960e-34
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLSQLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINN-SVVEIVDRIRRAYEL 318
            EV GLP +GEDRLIPLKA AWL+LSER  +G ++D+K +RKH NDILRLSQLLAP  RI L  KIA D++RFL  +  D SIDPK +++ N +V ++V RI +AYEL
Sbjct:  147 EVAGLPWVGEDRLIPLKAVAWLELSERKEQGAKVDAKDVRKHLNDILRLSQLLAPTTRISLDKKIAADMSRFLTAVASDTSIDPKVLQLGNVTVADLVTRIAQAYEL 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58310.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4F022_9PROT1.080e-4570.75Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A1D8J9B5_9BURK8.080e-3762.62Uncharacterized protein n=5 Tax=Comamonadaceae Tax... [more]
A0A1F4MDM1_9BURK1.110e-3662.62Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A2S4KBN3_9BURK4.780e-3662.73Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A158JI34_9BURK3.620e-3559.63Uncharacterized protein n=1 Tax=Caballeronia choic... [more]
A0A523Q1G0_9BURK4.990e-3560.19Uncharacterized protein n=3 Tax=Ideonella TaxID=36... [more]
Q12D94_POLSJ8.780e-3558.88Uncharacterized protein n=2 Tax=Polaromonas sp. (s... [more]
A0A257CWL6_9BURK2.450e-3461.68Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A368L8F9_9BURK2.940e-3458.49Uncharacterized protein n=1 Tax=Parvibium lacunae ... [more]
A0A2N2R9G5_9PROT3.960e-3460.75Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58310contigP-wetherbeei_contig58310:1..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296591.Bpro_1554
Model size333
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-35
EggNOG OGs28JTN@1|root,2Z9IV@2|Bacteria,1RCK3@1224|Proteobacteria,2VRPV@28216|Betaproteobacteria,4AE4F@80864|Comamonadaceae
DescriptionPsort location Cytoplasmic, score
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186864.0258288-CDS-P-wetherbeei_contig58310:0..3331683186864.0258288-CDS-P-wetherbeei_contig58310:0..333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58310 1..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58310.1.1prot_P-wetherbeei_contig58310.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58310 1..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58310.1.1

>prot_P-wetherbeei_contig58310.1.1 ID=prot_P-wetherbeei_contig58310.1.1|Name=mRNA_P-wetherbeei_contig58310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
EVDGLPRIGEDRLIPLKASAWLDLSERYARGEQIDSKTIRKHANDILRLS
QLLAPDIRIPLAAKIARDLNRFLDGIELDHSIDPKAIKINNSVVEIVDRI
RRAYELHQRR*
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mRNA from alignment at P-wetherbeei_contig58310:1..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58310.1.1 ID=mRNA_P-wetherbeei_contig58310.1.1|Name=mRNA_P-wetherbeei_contig58310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig58310:1..333+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTTGATGGATTGCCGCGGATCGGTGAGGACAGGCTGATCCCGCTCAA
GGCCAGCGCGTGGTTGGATCTCAGTGAGCGCTATGCGAGAGGTGAACAGA
TCGATAGCAAGACCATTCGCAAACACGCTAATGACATTCTGCGGCTCTCG
CAGTTGCTGGCCCCTGACATTCGCATTCCGCTGGCCGCGAAGATCGCCCG
GGATCTGAATCGCTTTCTCGATGGAATCGAGCTCGACCATTCGATTGACC
CGAAGGCCATCAAGATCAACAACAGCGTCGTCGAGATTGTCGACCGGATC
AGGCGGGCCTATGAATTGCATCAGCGTCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58310:1..333+

>mRNA_P-wetherbeei_contig58310.1.1 ID=mRNA_P-wetherbeei_contig58310.1.1|Name=mRNA_P-wetherbeei_contig58310.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig58310:1..333+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTTGATGGATTGCCGCGGATCGGTGAGGACAGGCTGATCCCGCTCAA
GGCCAGCGCGTGGTTGGATCTCAGTGAGCGCTATGCGAGAGGTGAACAGA
TCGATAGCAAGACCATTCGCAAACACGCTAATGACATTCTGCGGCTCTCG
CAGTTGCTGGCCCCTGACATTCGCATTCCGCTGGCCGCGAAGATCGCCCG
GGATCTGAATCGCTTTCTCGATGGAATCGAGCTCGACCATTCGATTGACC
CGAAGGCCATCAAGATCAACAACAGCGTCGTCGAGATTGTCGACCGGATC
AGGCGGGCCTATGAATTGCATCAGCGTCGCTGA
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