mRNA_P-wetherbeei_contig58300.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58300.1.1
Unique NamemRNA_P-wetherbeei_contig58300.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: UPI0014857E0F (ABC transporter ATP-binding protein n=2 Tax=Hydrogenophaga TaxID=47420 RepID=UPI0014857E0F)

HSP 1 Score: 323 bits (829), Expect = 5.740e-109
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFLTH 498
            QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRV+HV GETLHFQADGLG+MVLPR QESPGTGPASLSFRPHTV I+VRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEP+QARFLTH
Sbjct:  196 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVSHVGGETLHFQADGLGQMVLPRTQESPGTGPASLSFRPHTVTIRVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPTQARFLTH 361
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: A0A1I1LYC3_9BURK (Iron(III) transport system ATP-binding protein n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1I1LYC3_9BURK)

HSP 1 Score: 275 bits (704), Expect = 5.540e-90
Identity = 136/166 (81.93%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFLTH 498
            QEEAMTTADRMAVLDKGVLQQVG A ALFDFPANRFVA FVGTANLV+G+VT V+GETL FQADG+G MVLPR  ++P  G A+L+FRPHTV+I+VRDEH DASRIWLDGRVESSEFLGE+SRYRVRVGET+IVANQ HYSGLSLF PGAEVRLG+E +Q RFLTH
Sbjct:  198 QEEAMTTADRMAVLDKGVLQQVGKAAALFDFPANRFVAGFVGTANLVDGKVTQVNGETLTFQADGVGVMVLPRTPDAPVVGQATLAFRPHTVHIRVRDEHTDASRIWLDGRVESSEFLGESSRYRVRVGETVIVANQAHYSGLSLFQPGAEVRLGVESTQVRFLTH 363
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: A0A0A1VN98_9BURK (ABC-type spermidine/putrescine transport systems, ATPase components n=2 Tax=unclassified Acidovorax TaxID=2684926 RepID=A0A0A1VN98_9BURK)

HSP 1 Score: 243 bits (619), Expect = 3.780e-77
Identity = 116/164 (70.73%), Postives = 138/164 (84.15%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKG+LQQVG+A  L+DFP NRFVA FVGTANL+EG VT +SGETL F A GLG + LPR  E P  G A+L+FRPH V+I VRDE GDASR+WLDG+VES+EFLGE SRYRVRVGE  +V +Q HY+G+++FPPGA+VRLG+EP+Q R+L
Sbjct:  196 QEEAMTTADRMAVLDKGILQQVGSAAGLYDFPQNRFVAGFVGTANLLEGEVTALSGETLTFHARGLGPLTLPRPAEPPAVGAAALAFRPHQVSICVRDEQGDASRVWLDGQVESAEFLGEFSRYRVRVGEVALVTDQPHYAGIAMFPPGAQVRLGVEPTQLRYL 359
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: UPI000839EF35 (ABC transporter ATP-binding protein n=1 Tax=Polaromonas jejuensis TaxID=457502 RepID=UPI000839EF35)

HSP 1 Score: 241 bits (615), Expect = 1.560e-76
Identity = 117/167 (70.06%), Postives = 139/167 (83.23%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESP-GTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFLTH 498
            QEEAMTTADRMAVLDKG+LQQVGTA  LFDFP NRFVA FVGTANL+EG ++HV+GET+ F  +GLG +  P   ES    G A+++FRPH V+I+VRDE  DASR+W++GRVESSEFLGE SRYRVRVGE  +VA+Q HYSGL++FPPGAEVRLGIEP+Q RFL +
Sbjct:  196 QEEAMTTADRMAVLDKGILQQVGTAAGLFDFPGNRFVAGFVGTANLLEGHISHVNGETMSFNVNGLGPLTFPHPPESTLRPGAAAMAFRPHQVSIRVRDEQVDASRVWVEGRVESSEFLGEFSRYRVRVGEVAMVADQAHYSGLAMFPPGAEVRLGIEPTQVRFLDN 362
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: UPI0015665659 (ABC transporter ATP-binding protein n=1 Tax=unclassified Acidovorax TaxID=2684926 RepID=UPI0015665659)

HSP 1 Score: 241 bits (614), Expect = 2.150e-76
Identity = 115/164 (70.12%), Postives = 139/164 (84.76%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKG+LQQ+G+A  L+DFP NRFVA FVGTAN++EGRVT VSGET+ F   GLG + LPR QE+P  G A+L+FRPH V+I VRDE  DASR+WLDG+VES+EFLGE SRYRVRVGE  ++ +Q HY+GL++FPPGA+V+LGIEP+Q RFL
Sbjct:  196 QEEAMTTADRMAVLDKGILQQIGSAAGLYDFPHNRFVAGFVGTANVLEGRVTAVSGETVSFDVQGLGTLRLPRPQEAPAVGAAALAFRPHQVHICVRDEQVDASRLWLDGQVESAEFLGEFSRYRVRVGELALITDQPHYAGLAMFPPGAQVQLGIEPTQVRFL 359
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: J0U3R2_9BURK (ABC-type spermidine/putrescine transport system, ATPase component n=7 Tax=Acidovorax TaxID=12916 RepID=J0U3R2_9BURK)

HSP 1 Score: 237 bits (604), Expect = 7.380e-75
Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKG+LQQVG AT L+DFP NRFVA FVGTANL+EG+V  V GETL F+ +GLG + LPR  + P  G A+L+FRPH V+I+VRDE  DASR+WL+G VES+EFLGE SRYRVRVGE  +V +Q HY+GL++F PGAEVRLGIEP+Q RFL
Sbjct:  198 QEEAMTTADRMAVLDKGILQQVGAATGLYDFPINRFVAGFVGTANLLEGQVLSVGGETLVFRVEGLGNLTLPRPADPPAVGAAALAFRPHQVSIRVRDEQVDASRLWLNGLVESAEFLGEFSRYRVRVGEVAMVTDQPHYAGLAMFAPGAEVRLGIEPTQVRFL 361
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: A0A5C7VQD7_9BURK (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Ottowia sp. TaxID=1898956 RepID=A0A5C7VQD7_9BURK)

HSP 1 Score: 234 bits (596), Expect = 3.890e-74
Identity = 112/164 (68.29%), Postives = 139/164 (84.76%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKGVLQQVG+A+ L+D+PANRFVASFVGTAN++EG+ T V G+T+ F A+GLG++ LPR  E+P  G A+L+FRPH V+I+VRDE  DASR+W+DG VES+EFLGE SRYRVR GE  ++ +Q HY+G+ LFP GA+VRLGIEP+Q RFL
Sbjct:  160 QEEAMTTADRMAVLDKGVLQQVGSASGLYDYPANRFVASFVGTANVLEGQGTSVGGDTIGFHANGLGDIRLPRPPEAPAVGAAALAFRPHQVSIRVRDEQTDASRLWVDGVVESAEFLGEFSRYRVRAGEVALITDQPHYAGVPLFPTGAQVRLGIEPTQLRFL 323
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: A0A7G9RTJ6_9BURK (ABC transporter ATP-binding protein n=4 Tax=Diaphorobacter TaxID=238749 RepID=A0A7G9RTJ6_9BURK)

HSP 1 Score: 234 bits (597), Expect = 8.410e-74
Identity = 112/164 (68.29%), Postives = 134/164 (81.71%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKGVLQQVG+A  L+D+P NRFVA FVGTAN++EG VT V+GE+L F   G+G ++LPR  E+P  G A++SFRPH V I VRDE GDASR+WLDG+VES+EFLGE SRYRVRVGE  +VA+Q HY+G+ + P G  VRLGIEPSQ R+L
Sbjct:  198 QEEAMTTADRMAVLDKGVLQQVGSAAGLYDYPVNRFVAGFVGTANVLEGEVTQVTGESLSFLVPGIGNLLLPRPAEAPEVGRAAISFRPHQVQISVRDEWGDASRVWLDGKVESAEFLGEFSRYRVRVGEVAVVADQAHYAGIGMLPMGTAVRLGIEPSQLRYL 361
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: A0A072TKV2_9BURK (ABC transporter ATP-binding protein n=26 Tax=Burkholderiales TaxID=80840 RepID=A0A072TKV2_9BURK)

HSP 1 Score: 224 bits (572), Expect = 4.970e-70
Identity = 107/164 (65.24%), Postives = 134/164 (81.71%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKGVLQQVG+A  L+D+PANRFVA FVGTAN++EG V   +GE+L F+  GLG + LPR  + P  G A+L+FRPH V I VRD+ GDASR+W++G++ES+EFLGE SRYRVRVGE  +VA+Q HY+G+++FP G  VRLGIEP+Q R+L
Sbjct:  198 QEEAMTTADRMAVLDKGVLQQVGSAAGLYDYPANRFVAGFVGTANVLEGEVLPTTGESLVFKVPGLGTLTLPRPAQPPVPGRAALAFRPHQVQIAVRDDAGDASRVWVEGQIESAEFLGEFSRYRVRVGEVAVVADQAHYAGIAMFPMGMPVRLGIEPTQLRYL 361
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BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Match: F4GAQ2_ALIDK (Polyamine-transporting ATPase n=4 Tax=Alicycliphilus denitrificans TaxID=179636 RepID=F4GAQ2_ALIDK)

HSP 1 Score: 223 bits (569), Expect = 1.330e-69
Identity = 107/164 (65.24%), Postives = 131/164 (79.88%), Query Frame = 1 
Query:    1 QEEAMTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHVSGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDASRIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRLGIEPSQARFL 492
            QEEAMTTADRMAVLDKG+LQQVGTA  L+D+P NRFVA FVGTANL+EG VT VS +TL F A GLG + L R  E P  GPA+L+FRPH V+++ R E GD +R+WLDG VES+EFLGE SRYRVRVGE  + ++Q HY+G  +F PGA+VRLG++P+Q R+L
Sbjct:  196 QEEAMTTADRMAVLDKGILQQVGTAAGLYDYPHNRFVAGFVGTANLLEGEVTAVSADTLTFHARGLGPLALARPAEPPAIGPAALAFRPHQVSMRPRGEPGDGARVWLDGLVESAEFLGEFSRYRVRVGEVALTSDQPHYAGRGMFAPGAQVRLGLDPAQLRYL 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0014857E0F5.740e-10995.78ABC transporter ATP-binding protein n=2 Tax=Hydrog... [more]
A0A1I1LYC3_9BURK5.540e-9081.93Iron(III) transport system ATP-binding protein n=2... [more]
A0A0A1VN98_9BURK3.780e-7770.73ABC-type spermidine/putrescine transport systems, ... [more]
UPI000839EF351.560e-7670.06ABC transporter ATP-binding protein n=1 Tax=Polaro... [more]
UPI00156656592.150e-7670.12ABC transporter ATP-binding protein n=1 Tax=unclas... [more]
J0U3R2_9BURK7.380e-7570.12ABC-type spermidine/putrescine transport system, A... [more]
A0A5C7VQD7_9BURK3.890e-7468.29ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A7G9RTJ6_9BURK8.410e-7468.29ABC transporter ATP-binding protein n=4 Tax=Diapho... [more]
A0A072TKV2_9BURK4.970e-7065.24ABC transporter ATP-binding protein n=26 Tax=Burkh... [more]
F4GAQ2_ALIDK1.330e-6965.24Polyamine-transporting ATPase n=4 Tax=Alicycliphil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58300contigP-wetherbeei_contig58300:5..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1268622.AVS7_04474
PFAMsABC_tran,TOBE_2
Model size501
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02010
KEGG TC3.A.1.10
KEGG Pathwayko02010,map02010
KEGG ModuleM00190
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.38e-75
EggNOG OGsCOG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2VHEJ@28216|Betaproteobacteria,4ABSB@80864|Comamonadaceae
EC3.6.3.30
DescriptionPart of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
Cds size489
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.8949063-CDS-P-wetherbeei_contig58300:4..4931683186863.8949063-CDS-P-wetherbeei_contig58300:4..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58300 5..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.906722-UTR-P-wetherbeei_contig58300:493..5051683186863.906722-UTR-P-wetherbeei_contig58300:493..505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig58300 494..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58300.1.1prot_P-wetherbeei_contig58300.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58300 5..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58300.1.1

>prot_P-wetherbeei_contig58300.1.1 ID=prot_P-wetherbeei_contig58300.1.1|Name=mRNA_P-wetherbeei_contig58300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MTTADRMAVLDKGVLQQVGTATALFDFPANRFVASFVGTANLVEGRVTHV
SGETLHFQADGLGEMVLPRNQESPGTGPASLSFRPHTVNIKVRDEHGDAS
RIWLDGRVESSEFLGETSRYRVRVGETLIVANQYHYSGLSLFPPGAEVRL
GIEPSQARFLTH*
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mRNA from alignment at P-wetherbeei_contig58300:5..505-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58300.1.1 ID=mRNA_P-wetherbeei_contig58300.1.1|Name=mRNA_P-wetherbeei_contig58300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig58300:5..505- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAAGAGGCCATGACCACCGCCGACCGAATGGCCGTGCTCGACAAAGG
TGTGCTGCAGCAGGTGGGCACGGCCACCGCGCTGTTTGATTTCCCGGCCA
ACCGCTTCGTGGCGAGCTTCGTGGGCACGGCCAACCTCGTCGAAGGGCGC
GTGACGCACGTGAGCGGTGAGACGCTGCATTTCCAGGCCGACGGCCTGGG
CGAGATGGTGTTGCCGCGCAACCAGGAGAGCCCGGGCACGGGCCCGGCAT
CGCTGTCCTTCCGGCCGCACACCGTCAACATCAAGGTGCGCGACGAGCAC
GGCGATGCCTCGCGCATCTGGCTCGACGGCCGGGTGGAGAGTTCGGAGTT
CCTTGGCGAGACCTCGCGCTACCGGGTGCGCGTGGGCGAAACGCTGATCG
TGGCCAACCAGTACCACTACTCGGGCCTGTCGCTGTTTCCGCCCGGGGCC
GAGGTGCGGCTGGGCATCGAGCCTTCGCAGGCGCGTTTCCTCACGCACTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58300:5..505-

>mRNA_P-wetherbeei_contig58300.1.1 ID=mRNA_P-wetherbeei_contig58300.1.1|Name=mRNA_P-wetherbeei_contig58300.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig58300:5..505- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCGCCGACCGAATGGCCGTGCTCGACAAAGGTGTGCTGCAGCA
GGTGGGCACGGCCACCGCGCTGTTTGATTTCCCGGCCAACCGCTTCGTGG
CGAGCTTCGTGGGCACGGCCAACCTCGTCGAAGGGCGCGTGACGCACGTG
AGCGGTGAGACGCTGCATTTCCAGGCCGACGGCCTGGGCGAGATGGTGTT
GCCGCGCAACCAGGAGAGCCCGGGCACGGGCCCGGCATCGCTGTCCTTCC
GGCCGCACACCGTCAACATCAAGGTGCGCGACGAGCACGGCGATGCCTCG
CGCATCTGGCTCGACGGCCGGGTGGAGAGTTCGGAGTTCCTTGGCGAGAC
CTCGCGCTACCGGGTGCGCGTGGGCGAAACGCTGATCGTGGCCAACCAGT
ACCACTACTCGGGCCTGTCGCTGTTTCCGCCCGGGGCCGAGGTGCGGCTG
GGCATCGAGCCTTCGCAGGCGCGTTTCCTCACGCACTGA
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