mRNA_P-wetherbeei_contig58262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig58262.1.1
Unique NamemRNA_P-wetherbeei_contig58262.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A2E2JD17_9GAMM (Thiolase n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2E2JD17_9GAMM)

HSP 1 Score: 339 bits (870), Expect = 9.760e-115
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query:    1 PQLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPITY 504
            PQLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPITY
Sbjct:   39 PQLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPITY 206          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A1A6BID0_MYCGO (Thiolase n=3 Tax=Mycobacterium TaxID=1763 RepID=A0A1A6BID0_MYCGO)

HSP 1 Score: 219 bits (557), Expect = 2.090e-67
Identity = 101/165 (61.21%), Postives = 130/165 (78.79%), Query Frame = 1
Query:    4 QLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            +L P+D+ GLL +PAGMA+  G D+F HE++++ LGI P FSET+N GG TY +ML RA+LAI  GL D+VLC+GAG+FP VG G  + M+++ISHP+FEYPYG++IP ++AL ATRHM E GT RE LA VAVS REW+L HPDALM   G LT+D+VL+SRPI
Sbjct:   42 RLEPTDVDGLLVSPAGMATGTGADIFVHERLTDALGIRPRFSETVNVGGATYTIMLTRAALAIGAGLADAVLCVGAGKFPKVGKGGGDAMARMISHPDFEYPYGSFIPALYALAATRHMGERGTPREGLAAVAVSSREWALRHPDALMREAGPLTVDEVLNSRPI 206          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A132PEH7_9MYCO (Thiolase n=6 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A132PEH7_9MYCO)

HSP 1 Score: 216 bits (550), Expect = 2.490e-66
Identity = 101/167 (60.48%), Postives = 129/167 (77.25%), Query Frame = 1
Query:    4 QLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPITY 504
            Q+ P D+ GLL  PAGMA+  G D+F HE++++ LGI P F ETINAGG TY +ML RA+LAI  GL DSVLC+GAG+FP VG+G A+ M+++ISHP+FEYPYG++IP ++AL ATRHM E GT+R+ LA VAV  R+W+L HPDALM   G LTI+ VL SRPI +
Sbjct:   44 QVGPDDVDGLLVCPAGMAAGHGADIFVHERLNDALGIRPRFCETINAGGATYTIMLSRAALAIGAGLADSVLCVGAGKFPKVGAGGADAMARMISHPDFEYPYGSFIPALYALAATRHMAERGTSRDALAAVAVCSRDWALRHPDALMRDAGPLTIEMVLDSRPIAW 210          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: H5X745_9PSEU (Acetyl-CoA acetyltransferase n=7 Tax=Pseudonocardiaceae TaxID=2070 RepID=H5X745_9PSEU)

HSP 1 Score: 214 bits (546), Expect = 1.020e-65
Identity = 101/164 (61.59%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            + P+ + GLL  PAGMA   G DVF HE+I++ LGI P F ETIN GG TY +ML RA+ AI  GL D+VLC+GAG+FP VG+G A++M+++ISHP+FEYPYG++IP ++AL ATRHM E GT RE LA VAV+ REW+L HPDALM P G LTI++VL SRPI
Sbjct:   45 IGPNAVDGLLVCPAGMAGGQGADVFNHERINDALGIRPRFCETINVGGATYTVMLTRAATAIRAGLADAVLCVGAGKFPKVGAGGADLMARMISHPDFEYPYGSFIPALYALAATRHMAERGTPREALAAVAVTSREWALRHPDALMRPAGPLTIEQVLDSRPI 208          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A1X0JRB2_MYCSC (Thiolase n=14 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A1X0JRB2_MYCSC)

HSP 1 Score: 207 bits (527), Expect = 7.250e-63
Identity = 98/167 (58.68%), Postives = 127/167 (76.05%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVG-SGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPITY 504
            L P D+ GLL  P+GMAS  G D+F HE++++ LGI P F ET+N GG TY +ML RA+LAI  GL ++VLC+GAG+FP VG  G A  M+++ISHP+FEYPYG++IP ++AL ATRHM E GT+R+ LA VAVS REW+L HPDALM   G LT++ VL+SRPI +
Sbjct:   45 LGPRDVDGLLVCPSGMASGAGADIFVHERLNDVLGIRPRFCETVNVGGATYTIMLSRAALAISAGLANAVLCIGAGKFPKVGRGGGANAMARMISHPDFEYPYGSFIPALYALAATRHMAERGTSRDALAAVAVSSREWALRHPDALMRNAGPLTVEMVLASRPIAW 211          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A2E7XG26_9GAMM (Thiolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XG26_9GAMM)

HSP 1 Score: 205 bits (522), Expect = 3.490e-62
Identity = 93/164 (56.71%), Postives = 127/164 (77.44%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            L PS I GLL +PAGMA   G ++F HE +++ LGI+P ++ T+NAGG TY LM +RA+  I  GL D+VLC+GAG+FP VG+G  + M+K++S P+FEYPYG++IP ++AL A RHMH+ GTTREQLA VAVS R+W+L HPDA+M  +G +T+D V++SRPI
Sbjct:   40 LDPSLIDGLLISPAGMAVGSGANIFVHEWMTDSLGIKPRYAMTVNAGGATYNLMAMRAATTISSGLADAVLCIGAGKFPKVGAGAGDTMAKMVSDPQFEYPYGSFIPALYALTANRHMHDRGTTREQLASVAVSSRKWALKHPDAIMGHKGPITVDDVVNSRPI 203          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A352Q4C5_9GAMM (Thiolase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A352Q4C5_9GAMM)

HSP 1 Score: 205 bits (521), Expect = 5.330e-62
Identity = 98/164 (59.76%), Postives = 124/164 (75.61%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            L+P DI GLL+ P+GMA    +D+F HE++ EELGI P F++T+NAGG TY LM+ RA+LAI +GL DSVLCLGAG+FP V +G AE M++++SH  +E+PYGT+IP I+A  ATRHMHEFGTT EQ A VAVS REW+L +PDA       LT+ KV  SRPI
Sbjct:   40 LKPGDIQGLLACPSGMAGGGSSDIFVHEQLYEELGIHPLFADTMNAGGSTYGLMVQRAALAIRQGLADSVLCLGAGKFPKVSAGGAETMARMVSHEIYEFPYGTFIPAIYAQVATRHMHEFGTTAEQYAAVAVSSREWALKNPDAATYGSEPLTVAKVRESRPI 203          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A3D3S5K9_9GAMM (Thiolase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D3S5K9_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 2.770e-61
Identity = 96/164 (58.54%), Postives = 122/164 (74.39%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            ++P DI GLL APAGMA     ++F HE++ EELG+E  F+ET+NAGG T+A+M IRA++AI  GL D VLC+ AGRFPNVG G A+  +++ +HP+F+  YG YIPPI+A  ATRHMHE G  RE +A VAV QR WSL HP ALMA +G LT+D VL +RPI
Sbjct:   40 IKPGDIQGLLVAPAGMADGVSDNIFVHERLIEELGLEARFAETVNAGGSTHAVMAIRAAMAIRAGLADGVLCVSAGRFPNVGGGGAQRNTRIFAHPDFDSLYGPYIPPIYAQVATRHMHEHGVGREAMAAVAVGQRAWSLRHPQALMASKGPLTVDAVLDARPI 203          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A1Y5FP00_9GAMM (Thiolase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Y5FP00_9GAMM)

HSP 1 Score: 202 bits (515), Expect = 4.340e-61
Identity = 93/164 (56.71%), Postives = 128/164 (78.05%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            L+P+DI GLL+ P+GMA     D+F HE++ EE+GI+P F++T+NAGG TY LM+ RA+LAI++G  +SVLC+GAG+FP V +G AE M++++SH  +E+PYGT+IP ++A  ATRHMHE+GTT EQLA+V VS REW+LL+PDA       LT++KV  SRPI
Sbjct:   42 LKPTDIQGLLACPSGMAGGGSNDIFVHEQLYEEMGIQPLFADTMNAGGSTYGLMVQRAALAIQQGKVESVLCVGAGKFPKVSTGGAESMARMVSHEIYEFPYGTFIPALYAQVATRHMHEYGTTVEQLAEVCVSTREWALLNPDASTYGSEALTVEKVRQSRPI 205          
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Match: A0A522ABV0_9GAMM (Thiolase family protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A522ABV0_9GAMM)

HSP 1 Score: 202 bits (514), Expect = 5.680e-61
Identity = 95/164 (57.93%), Postives = 123/164 (75.00%), Query Frame = 1
Query:    7 LRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGGGTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEFEYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMAPQGRLTIDKVLSSRPI 498
            L+P DI GLL+ PAGMA     D+F HE++ EELGI P + +T+NAGG TY  M+ RA++AI +GL DSVLC+GAG+FP V +G AE+M++++SH  FE+PYGT+IP I+A  ATRHMHEFGTT EQ A+VAVS REW+L +P A       LT+ KV +SRPI
Sbjct:   40 LKPGDIQGLLACPAGMAGGGSADIFVHEQLYEELGIHPLYGDTMNAGGATYGYMVQRAAVAIRQGLVDSVLCIGAGKFPKVSTGGAELMARMVSHEAFEFPYGTFIPAIYAQVATRHMHEFGTTAEQFAEVAVSSREWALRNPQAATYGTEPLTVAKVRASRPI 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig58262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2JD17_9GAMM9.760e-115100.00Thiolase n=4 Tax=cellular organisms TaxID=131567 R... [more]
A0A1A6BID0_MYCGO2.090e-6761.21Thiolase n=3 Tax=Mycobacterium TaxID=1763 RepID=A0... [more]
A0A132PEH7_9MYCO2.490e-6660.48Thiolase n=6 Tax=Mycobacteriaceae TaxID=1762 RepID... [more]
H5X745_9PSEU1.020e-6561.59Acetyl-CoA acetyltransferase n=7 Tax=Pseudonocardi... [more]
A0A1X0JRB2_MYCSC7.250e-6358.68Thiolase n=14 Tax=Mycobacteriaceae TaxID=1762 RepI... [more]
A0A2E7XG26_9GAMM3.490e-6256.71Thiolase n=1 Tax=Gammaproteobacteria bacterium Tax... [more]
A0A352Q4C5_9GAMM5.330e-6259.76Thiolase n=1 Tax=Porticoccaceae bacterium TaxID=20... [more]
A0A3D3S5K9_9GAMM2.770e-6158.54Thiolase n=2 Tax=Gammaproteobacteria bacterium Tax... [more]
A0A1Y5FP00_9GAMM4.340e-6156.71Thiolase n=3 Tax=Gammaproteobacteria TaxID=1236 Re... [more]
A0A522ABV0_9GAMM5.680e-6157.93Thiolase family protein n=1 Tax=Porticoccaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig58262contigP-wetherbeei_contig58262:3..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog882083.SacmaDRAFT_5381
PFAMsThiolase_C,Thiolase_N
Model size504
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.67e-66
EggNOG OGsCOG0183@1|root,COG0183@2|Bacteria,2GKH4@201174|Actinobacteria,4EB3V@85010|Pseudonocardiales
DescriptionAcetyl-CoA acetyltransferase
Cds size504
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186863.2255-CDS-P-wetherbeei_contig58262:2..5061683186863.2255-CDS-P-wetherbeei_contig58262:2..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig58262 3..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig58262.1.1prot_P-wetherbeei_contig58262.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig58262 3..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig58262.1.1

>prot_P-wetherbeei_contig58262.1.1 ID=prot_P-wetherbeei_contig58262.1.1|Name=mRNA_P-wetherbeei_contig58262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
PQLRPSDIGGLLSAPAGMASADGTDVFAHEKISEELGIEPTFSETINAGG
GTYALMLIRASLAIERGLCDSVLCLGAGRFPNVGSGMAEMMSKLISHPEF
EYPYGTYIPPIFALNATRHMHEFGTTREQLAQVAVSQREWSLLHPDALMA
PQGRLTIDKVLSSRPITY
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mRNA from alignment at P-wetherbeei_contig58262:3..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig58262.1.1 ID=mRNA_P-wetherbeei_contig58262.1.1|Name=mRNA_P-wetherbeei_contig58262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58262:3..506- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAACTGCGGCCCTCGGATATCGGTGGCCTGCTGTCAGCACCCGCCGG CATGGCCTCGGCCGACGGCACCGATGTGTTCGCGCACGAAAAGATCTCGG AAGAACTCGGCATCGAGCCGACCTTCAGCGAGACCATCAATGCCGGCGGC GGCACCTACGCGCTGATGCTGATCCGCGCGTCCCTGGCCATCGAGCGCGG ACTCTGCGATTCCGTGCTCTGCCTGGGTGCCGGGCGCTTCCCCAACGTGG GCAGCGGCATGGCCGAGATGATGAGCAAGCTGATCAGCCATCCCGAGTTC GAATATCCGTACGGCACCTATATCCCGCCGATCTTCGCGCTCAACGCCAC GCGCCACATGCACGAATTCGGCACCACGCGCGAGCAGCTCGCGCAGGTCG CGGTGTCGCAGCGCGAATGGTCGCTGCTGCATCCGGATGCGCTGATGGCC CCGCAGGGGCGGCTGACGATCGACAAGGTGCTGTCCTCGCGCCCGATCAC CTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig58262:3..506-

>mRNA_P-wetherbeei_contig58262.1.1 ID=mRNA_P-wetherbeei_contig58262.1.1|Name=mRNA_P-wetherbeei_contig58262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig58262:3..506- (Phaeothamnion wetherbeei SAG_119_79)
CCGCAACTGCGGCCCTCGGATATCGGTGGCCTGCTGTCAGCACCCGCCGG
CATGGCCTCGGCCGACGGCACCGATGTGTTCGCGCACGAAAAGATCTCGG
AAGAACTCGGCATCGAGCCGACCTTCAGCGAGACCATCAATGCCGGCGGC
GGCACCTACGCGCTGATGCTGATCCGCGCGTCCCTGGCCATCGAGCGCGG
ACTCTGCGATTCCGTGCTCTGCCTGGGTGCCGGGCGCTTCCCCAACGTGG
GCAGCGGCATGGCCGAGATGATGAGCAAGCTGATCAGCCATCCCGAGTTC
GAATATCCGTACGGCACCTATATCCCGCCGATCTTCGCGCTCAACGCCAC
GCGCCACATGCACGAATTCGGCACCACGCGCGAGCAGCTCGCGCAGGTCG
CGGTGTCGCAGCGCGAATGGTCGCTGCTGCATCCGGATGCGCTGATGGCC
CCGCAGGGGCGGCTGACGATCGACAAGGTGCTGTCCTCGCGCCCGATCAC
CTAC
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